Wall clock time and date at job start Fri Apr 10 2020 23:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46646 * 105.67897 * 3 2 1 5 5 C 1.36935 * 119.99706 * 273.18029 * 4 3 2 6 6 H 1.08002 * 119.99779 * 186.91978 * 5 4 3 7 7 C 1.38812 * 120.00321 * 6.91949 * 5 4 3 8 8 N 1.31615 * 119.99808 * 25.09011 * 7 5 4 9 9 Si 1.86803 * 120.00172 * 205.08243 * 7 5 4 10 10 H 1.48501 * 109.46894 * 90.00396 * 9 7 5 11 11 H 1.48496 * 109.46894 * 210.00533 * 9 7 5 12 12 H 1.48499 * 109.47036 * 330.00401 * 9 7 5 13 13 S 1.65600 * 119.99947 * 93.18865 * 4 3 2 14 14 O 1.42097 * 106.40273 * 156.45611 * 13 4 3 15 15 O 1.42096 * 106.40289 * 23.53038 * 13 4 3 16 16 C 1.76205 * 107.21529 * 269.99546 * 13 4 3 17 17 C 1.38227 * 119.98878 * 115.02008 * 16 13 4 18 18 C 1.38181 * 120.05098 * 179.97438 * 17 16 13 19 19 C 1.50699 * 119.98839 * 180.27755 * 18 17 16 20 20 C 1.38494 * 120.02533 * 0.02562 * 18 17 16 21 21 F 1.35105 * 120.01366 * 180.02562 * 20 18 17 22 22 C 1.38401 * 119.97689 * 359.97438 * 20 18 17 23 23 C 1.38441 * 119.94390 * 359.97438 * 22 20 18 24 24 F 1.35106 * 120.01056 * 179.97438 * 23 22 20 25 25 H 4.40634 * 5.51401 * 180.02562 * 4 1 2 26 26 H 1.08991 * 109.47375 * 345.67808 * 3 2 1 27 27 H 1.08994 * 109.46668 * 225.67661 * 3 2 1 28 28 H 0.96994 * 120.00428 * 179.97438 * 8 7 5 29 29 H 1.08005 * 119.97409 * 0.02562 * 17 16 13 30 30 H 1.08999 * 109.47539 * 269.72914 * 19 18 17 31 31 H 1.09003 * 109.47120 * 29.73196 * 19 18 17 32 32 H 1.09001 * 109.47305 * 149.72308 * 19 18 17 33 33 H 1.07992 * 120.02412 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3742 -1.3299 5 6 3.3006 -0.5854 -2.2925 6 1 3.7644 -0.3310 -3.2341 7 6 2.8734 -1.8852 -2.0581 8 7 1.9091 -2.1149 -1.1923 9 14 3.6671 -3.3083 -2.9715 10 1 4.8256 -3.8128 -2.1913 11 1 2.6749 -4.3993 -3.1460 12 1 4.1316 -2.8441 -4.3034 13 16 3.4845 1.9568 -1.6689 14 8 4.4101 1.9407 -2.7470 15 8 3.7537 2.5840 -0.4227 16 6 2.0103 2.6959 -2.2897 17 6 1.3909 3.7057 -1.5775 18 6 0.2351 4.2866 -2.0634 19 6 -0.4356 5.3917 -1.2889 20 6 -0.3043 3.8572 -3.2645 21 9 -1.4341 4.4256 -3.7396 22 6 0.3150 2.8462 -3.9785 23 6 1.4735 2.2657 -3.4912 24 9 2.0789 1.2783 -4.1869 25 1 -1.0500 0.0001 0.0002 26 1 3.0098 -0.9948 0.2542 27 1 3.0089 0.7188 0.7352 28 1 1.6103 -3.0231 -1.0287 29 1 1.8111 4.0415 -0.6409 30 1 -1.1631 4.9628 -0.5998 31 1 0.3141 5.9477 -0.7260 32 1 -0.9430 6.0641 -1.9806 33 1 -0.1047 2.5110 -4.9154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281204855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:06 Heat of formation + Delta-G solvation = -63.690209 kcal Electronic energy + Delta-G solvation = -24919.548853 eV Core-core repulsion = 20904.035948 eV Total energy + Delta-G solvation = -4015.512904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -48.94491 -48.51823 -38.53352 -36.44309 -35.85597 -34.47206 -32.37437 -32.15037 -31.24242 -30.56322 -26.70143 -26.51414 -23.97379 -23.10598 -21.81201 -18.63998 -18.03969 -17.97807 -17.30855 -16.85798 -16.60230 -16.11895 -15.79028 -15.11566 -14.94065 -14.69583 -14.43524 -14.20829 -14.00496 -13.49434 -13.42359 -13.29732 -13.01777 -12.51206 -12.25827 -12.01909 -11.94090 -11.43235 -11.30732 -11.26282 -11.06579 -10.83154 -10.78528 -10.49208 -10.36697 -10.05146 -9.73324 -9.33076 -8.99708 -8.83615 -8.44178 -8.32781 -6.74453 -4.05326 0.96763 1.30789 1.59316 3.04160 3.10243 3.15544 3.44849 3.70989 3.92094 4.07830 4.09412 4.46568 4.55679 4.68844 4.75424 4.82420 5.00464 5.28741 5.47408 5.49401 5.61276 5.76216 5.77813 5.90377 6.10684 6.16639 6.23889 6.34355 6.38866 6.64634 6.90710 7.03114 7.06225 7.14322 8.05854 8.41444 8.81951 8.86269 10.15710 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.006040 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.644559 B = 4634.971857 C = 4751.684663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.113 4.113 3 C 0.232 3.768 4 N -0.782 5.782 5 C -0.221 4.221 6 H 0.130 0.870 7 C 0.026 3.974 8 N -0.806 5.806 9 Si 0.935 3.065 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.261 1.261 13 S 2.499 3.501 14 O -0.975 6.975 15 O -0.997 6.997 16 C -0.698 4.698 17 C 0.017 3.983 18 C -0.160 4.160 19 C -0.108 4.108 20 C 0.149 3.851 21 F -0.135 7.135 22 C -0.215 4.215 23 C 0.220 3.780 24 F -0.108 7.108 25 H 0.196 0.804 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.279 0.721 29 H 0.150 0.850 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 4.701 0.183 6.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.116 4.116 3 C 0.107 3.893 4 N -0.602 5.602 5 C -0.372 4.372 6 H 0.147 0.853 7 C -0.188 4.188 8 N -0.445 5.445 9 Si 0.759 3.241 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.185 1.185 13 S 2.597 3.403 14 O -0.965 6.965 15 O -0.986 6.986 16 C -0.773 4.773 17 C -0.002 4.002 18 C -0.162 4.162 19 C -0.164 4.164 20 C 0.130 3.870 21 F -0.113 7.113 22 C -0.235 4.235 23 C 0.200 3.800 24 F -0.086 7.086 25 H 0.213 0.787 26 H 0.135 0.865 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.167 0.833 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.803 5.373 0.352 6.592 hybrid contribution -1.311 -0.736 -1.062 1.841 sum -5.114 4.637 -0.709 6.939 Atomic orbital electron populations 1.24202 0.95302 1.06088 1.02754 1.23366 0.94544 0.95765 0.97932 1.18571 0.83918 1.02675 0.84160 1.55876 1.70129 1.19413 1.14817 1.20468 1.28809 0.86547 1.01398 0.85289 1.25743 0.95173 1.00091 0.97777 1.70236 1.20581 1.22835 1.30854 0.85756 0.78999 0.79127 0.80195 1.19450 1.20572 1.18463 1.13813 0.79059 0.74281 0.73192 1.93370 1.61940 1.86216 1.54942 1.93309 1.85791 1.76536 1.42988 1.32719 1.30368 1.10660 1.03593 1.20552 0.91324 0.90692 0.97631 1.20017 0.98510 1.01932 0.95696 1.20669 1.00555 0.95647 0.99577 1.17173 0.83469 0.93366 0.93040 1.91474 1.48332 1.83384 1.88113 1.20983 0.98243 1.00735 1.03540 1.16635 0.89761 0.85080 0.88571 1.91643 1.81733 1.57629 1.77616 0.78711 0.86494 0.89770 0.90955 0.83254 0.90862 0.90816 0.91468 0.83695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.36 19.25 29.55 0.57 -4.79 16 2 C -0.11 -2.46 11.24 -37.12 -0.42 -2.88 16 3 C 0.23 4.98 5.45 -6.83 -0.04 4.94 16 4 N -0.78 -18.06 2.88 -62.78 -0.18 -18.24 16 5 C -0.22 -5.21 8.41 -15.06 -0.13 -5.34 16 6 H 0.13 3.10 6.81 -52.49 -0.36 2.74 16 7 C 0.03 0.59 4.92 -17.43 -0.09 0.50 16 8 N -0.81 -18.26 8.96 55.49 0.50 -17.76 16 9 Si 0.93 17.75 29.62 -169.99 -5.04 12.72 16 10 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 11 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 12 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 13 S 2.50 58.01 5.30 -107.50 -0.57 57.44 16 14 O -0.98 -24.96 16.20 -57.17 -0.93 -25.89 16 15 O -1.00 -23.53 15.54 -57.17 -0.89 -24.42 16 16 C -0.70 -14.73 5.91 -39.51 -0.23 -14.97 16 17 C 0.02 0.31 9.20 -39.61 -0.36 -0.05 16 18 C -0.16 -2.60 5.89 -104.55 -0.62 -3.22 16 19 C -0.11 -1.33 9.83 36.01 0.35 -0.98 16 20 C 0.15 2.49 7.24 -39.43 -0.29 2.20 16 21 F -0.13 -2.06 16.48 2.25 0.04 -2.02 16 22 C -0.21 -3.81 10.01 -39.45 -0.39 -4.20 16 23 C 0.22 4.55 7.21 -39.43 -0.28 4.27 16 24 F -0.11 -2.37 14.77 2.25 0.03 -2.34 16 25 H 0.20 3.30 7.80 -54.09 -0.42 2.88 16 26 H 0.12 2.50 6.42 -51.93 -0.33 2.16 16 27 H 0.08 1.68 6.95 -51.93 -0.36 1.32 16 28 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 29 H 0.15 2.56 7.33 -52.48 -0.38 2.17 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.07 0.75 7.64 -51.93 -0.40 0.36 16 33 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -27.70 311.20 -6.92 -34.62 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -2.66 Total: 5.70 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.92 Total: -24.50 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.32 Total: -36.00 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -1.81 Total: -50.30 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.07 Total: -4.36 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.04 Total: 12.72 kcal Atomic # 16 Polarization: 58.01 SS G_CDS: -0.57 Total: 57.44 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.70 -6.92 -34.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281204855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.065 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds