Wall clock time and date at job start Fri Apr 10 2020 23:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46646 * 105.67897 * 3 2 1 5 5 C 1.36935 * 119.99706 * 273.18029 * 4 3 2 6 6 H 1.08002 * 119.99779 * 186.91978 * 5 4 3 7 7 C 1.38812 * 120.00321 * 6.91949 * 5 4 3 8 8 N 1.31615 * 119.99808 * 25.09011 * 7 5 4 9 9 Si 1.86803 * 120.00172 * 205.08243 * 7 5 4 10 10 H 1.48501 * 109.46894 * 90.00396 * 9 7 5 11 11 H 1.48496 * 109.46894 * 210.00533 * 9 7 5 12 12 H 1.48499 * 109.47036 * 330.00401 * 9 7 5 13 13 S 1.65600 * 119.99947 * 93.18865 * 4 3 2 14 14 O 1.42097 * 106.40273 * 156.45611 * 13 4 3 15 15 O 1.42096 * 106.40289 * 23.53038 * 13 4 3 16 16 C 1.76205 * 107.21529 * 269.99546 * 13 4 3 17 17 C 1.38227 * 119.98878 * 115.02008 * 16 13 4 18 18 C 1.38181 * 120.05098 * 179.97438 * 17 16 13 19 19 C 1.50699 * 119.98839 * 180.27755 * 18 17 16 20 20 C 1.38494 * 120.02533 * 0.02562 * 18 17 16 21 21 F 1.35105 * 120.01366 * 180.02562 * 20 18 17 22 22 C 1.38401 * 119.97689 * 359.97438 * 20 18 17 23 23 C 1.38441 * 119.94390 * 359.97438 * 22 20 18 24 24 F 1.35106 * 120.01056 * 179.97438 * 23 22 20 25 25 H 4.40634 * 5.51401 * 180.02562 * 4 1 2 26 26 H 1.08991 * 109.47375 * 345.67808 * 3 2 1 27 27 H 1.08994 * 109.46668 * 225.67661 * 3 2 1 28 28 H 0.96994 * 120.00428 * 179.97438 * 8 7 5 29 29 H 1.08005 * 119.97409 * 0.02562 * 17 16 13 30 30 H 1.08999 * 109.47539 * 269.72914 * 19 18 17 31 31 H 1.09003 * 109.47120 * 29.73196 * 19 18 17 32 32 H 1.09001 * 109.47305 * 149.72308 * 19 18 17 33 33 H 1.07992 * 120.02412 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3742 -1.3299 5 6 3.3006 -0.5854 -2.2925 6 1 3.7644 -0.3310 -3.2341 7 6 2.8734 -1.8852 -2.0581 8 7 1.9091 -2.1149 -1.1923 9 14 3.6671 -3.3083 -2.9715 10 1 4.8256 -3.8128 -2.1913 11 1 2.6749 -4.3993 -3.1460 12 1 4.1316 -2.8441 -4.3034 13 16 3.4845 1.9568 -1.6689 14 8 4.4101 1.9407 -2.7470 15 8 3.7537 2.5840 -0.4227 16 6 2.0103 2.6959 -2.2897 17 6 1.3909 3.7057 -1.5775 18 6 0.2351 4.2866 -2.0634 19 6 -0.4356 5.3917 -1.2889 20 6 -0.3043 3.8572 -3.2645 21 9 -1.4341 4.4256 -3.7396 22 6 0.3150 2.8462 -3.9785 23 6 1.4735 2.2657 -3.4912 24 9 2.0789 1.2783 -4.1869 25 1 -1.0500 0.0001 0.0002 26 1 3.0098 -0.9948 0.2542 27 1 3.0089 0.7188 0.7352 28 1 1.6103 -3.0231 -1.0287 29 1 1.8111 4.0415 -0.6409 30 1 -1.1631 4.9628 -0.5998 31 1 0.3141 5.9477 -0.7260 32 1 -0.9430 6.0641 -1.9806 33 1 -0.1047 2.5110 -4.9154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281204855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:04 Heat of formation + Delta-G solvation = -79.286912 kcal Electronic energy + Delta-G solvation = -24920.225176 eV Core-core repulsion = 20904.035948 eV Total energy + Delta-G solvation = -4016.189228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.23383 -50.12149 -39.94132 -38.14980 -37.74369 -36.38320 -33.84780 -33.63850 -32.92309 -32.01614 -28.39123 -27.73831 -25.69945 -24.55284 -23.22403 -20.38367 -19.71783 -19.45467 -18.90795 -18.41978 -18.24224 -17.79752 -17.17316 -16.58024 -16.47177 -16.34007 -16.10702 -15.69245 -15.44998 -15.20747 -15.03449 -14.36206 -14.34180 -14.19588 -13.73829 -13.58830 -13.14709 -13.06130 -12.80759 -12.69944 -12.66879 -12.60788 -12.55856 -12.27280 -12.00377 -11.75280 -11.38672 -10.98025 -10.61136 -10.31625 -10.13229 -9.74051 -8.43324 -5.83449 -0.51783 -0.15311 -0.11566 1.50657 1.56021 1.64441 1.93135 2.12375 2.32872 2.45540 2.66447 2.76204 2.84354 3.13141 3.28965 3.42042 3.58888 3.86130 3.94004 4.13691 4.26082 4.44393 4.51867 4.69669 4.71305 4.74523 4.84901 4.95448 5.04697 5.11618 5.23129 5.38876 5.48789 5.64295 6.31248 6.66687 7.11258 7.21175 8.47028 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.006040 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.644559 B = 4634.971857 C = 4751.684663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.147 4.147 3 C 0.232 3.768 4 N -0.791 5.791 5 C -0.249 4.249 6 H 0.115 0.885 7 C 0.002 3.998 8 N -0.821 5.821 9 Si 0.990 3.010 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.266 1.266 13 S 2.512 3.488 14 O -1.007 7.007 15 O -1.007 7.007 16 C -0.721 4.721 17 C 0.008 3.992 18 C -0.147 4.147 19 C -0.109 4.109 20 C 0.156 3.844 21 F -0.121 7.121 22 C -0.210 4.210 23 C 0.191 3.809 24 F -0.125 7.125 25 H 0.226 0.774 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.284 0.716 29 H 0.159 0.841 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 5.397 0.363 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.150 4.150 3 C 0.107 3.893 4 N -0.612 5.612 5 C -0.399 4.399 6 H 0.132 0.868 7 C -0.210 4.210 8 N -0.459 5.459 9 Si 0.812 3.188 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.190 1.190 13 S 2.613 3.387 14 O -0.997 6.997 15 O -0.997 6.997 16 C -0.799 4.799 17 C -0.011 4.011 18 C -0.149 4.149 19 C -0.166 4.166 20 C 0.136 3.864 21 F -0.099 7.099 22 C -0.230 4.230 23 C 0.170 3.830 24 F -0.103 7.103 25 H 0.243 0.757 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.177 0.823 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.712 6.048 0.557 8.337 hybrid contribution -0.853 -0.789 -1.110 1.607 sum -6.565 5.259 -0.553 8.430 Atomic orbital electron populations 1.24957 0.96160 1.04700 1.01304 1.23568 0.95045 0.97074 0.99264 1.18566 0.84443 1.02656 0.83593 1.55666 1.71138 1.19038 1.15309 1.20417 1.30624 0.87464 1.01405 0.86787 1.26345 0.95175 1.01171 0.98321 1.70290 1.20873 1.23402 1.31319 0.84962 0.78399 0.76575 0.78899 1.18759 1.19900 1.19047 1.12957 0.78928 0.74332 0.72522 1.93321 1.63580 1.86808 1.56016 1.93278 1.86269 1.76892 1.43265 1.32374 1.30106 1.12587 1.04868 1.20748 0.92183 0.90318 0.97892 1.20408 0.97252 1.01805 0.95391 1.20833 1.01203 0.94619 0.99914 1.17194 0.83533 0.92753 0.92920 1.91515 1.47471 1.82979 1.87928 1.21198 0.97077 1.00418 1.04351 1.16908 0.91204 0.85838 0.89022 1.91598 1.82261 1.58474 1.77940 0.75699 0.86857 0.89011 0.90554 0.82317 0.89236 0.89148 0.89894 0.81416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.85 19.25 74.32 1.43 -8.42 16 2 C -0.15 -6.33 11.24 31.13 0.35 -5.98 16 3 C 0.23 10.14 5.45 84.57 0.46 10.60 16 4 N -0.79 -37.46 2.88 -352.52 -1.02 -38.47 16 5 C -0.25 -12.08 8.41 84.03 0.71 -11.38 16 6 H 0.11 5.76 6.81 -2.91 -0.02 5.74 16 7 C 0.00 0.11 4.92 84.86 0.42 0.53 16 8 N -0.82 -37.12 8.96 21.65 0.19 -36.92 16 9 Si 0.99 36.41 29.62 68.60 2.03 38.44 16 10 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 11 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 12 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 13 S 2.51 119.49 5.30 -56.49 -0.30 119.19 16 14 O -1.01 -53.53 16.20 -128.00 -2.07 -55.61 16 15 O -1.01 -48.21 15.54 -128.00 -1.99 -50.20 16 16 C -0.72 -30.48 5.91 22.32 0.13 -30.34 16 17 C 0.01 0.27 9.20 22.25 0.20 0.47 16 18 C -0.15 -4.37 5.89 -19.82 -0.12 -4.48 16 19 C -0.11 -2.26 9.83 71.24 0.70 -1.56 16 20 C 0.16 4.76 7.24 22.37 0.16 4.92 16 21 F -0.12 -3.24 16.48 44.97 0.74 -2.50 16 22 C -0.21 -7.14 10.01 22.36 0.22 -6.91 16 23 C 0.19 7.91 7.21 22.37 0.16 8.07 16 24 F -0.12 -5.63 14.77 44.97 0.66 -4.96 16 25 H 0.23 6.98 7.80 -4.42 -0.03 6.94 16 26 H 0.11 4.95 6.42 -2.39 -0.02 4.93 16 27 H 0.09 3.74 6.95 -2.39 -0.02 3.72 16 28 H 0.28 11.97 8.31 -92.71 -0.77 11.20 16 29 H 0.16 5.23 7.33 -2.91 -0.02 5.21 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.60 8.08 -2.39 -0.02 1.58 16 32 H 0.08 1.49 7.64 -2.39 -0.02 1.47 16 33 H 0.17 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -59.49 311.20 4.25 -55.24 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.16 Total: 20.26 kcal Atomic # 6 Polarization: -49.30 SS G_CDS: 4.83 Total: -44.47 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -0.82 Total: -75.39 kcal Atomic # 8 Polarization: -101.74 SS G_CDS: -4.06 Total: -105.81 kcal Atomic # 9 Polarization: -8.87 SS G_CDS: 1.41 Total: -7.46 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Atomic # 16 Polarization: 119.49 SS G_CDS: -0.30 Total: 119.19 kcal Total: -59.49 4.25 -55.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281204855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.042 kcal (2) G-P(sol) polarization free energy of solvation -59.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds