Wall clock time and date at job start Fri Apr 10 2020 23:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47240 * 310.68168 * 3 2 1 5 5 C 1.36934 * 120.00210 * 273.01137 * 4 3 2 6 6 H 1.07993 * 120.00365 * 187.71267 * 5 4 3 7 7 C 1.38815 * 119.99833 * 7.71167 * 5 4 3 8 8 N 1.31621 * 119.99838 * 24.87546 * 7 5 4 9 9 Si 1.86798 * 120.00282 * 204.87362 * 7 5 4 10 10 H 1.48505 * 109.47116 * 59.99650 * 9 7 5 11 11 H 1.48491 * 109.47562 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46938 * 300.00384 * 9 7 5 13 13 S 1.65602 * 119.99738 * 93.29115 * 4 3 2 14 14 O 1.42093 * 106.40533 * 23.26141 * 13 4 3 15 15 O 1.42102 * 106.40104 * 156.18422 * 13 4 3 16 16 C 1.76196 * 107.21499 * 269.72073 * 13 4 3 17 17 C 1.38212 * 119.99984 * 114.99994 * 16 13 4 18 18 C 1.38426 * 120.00286 * 179.97438 * 17 16 13 19 19 F 1.35094 * 120.00136 * 179.97438 * 18 17 16 20 20 C 1.38478 * 119.99719 * 0.02562 * 18 17 16 21 21 C 1.50704 * 119.99577 * 179.97438 * 20 18 17 22 22 C 1.38156 * 120.00221 * 359.97438 * 20 18 17 23 23 C 1.38432 * 120.00429 * 294.72444 * 16 13 4 24 24 F 1.35095 * 119.99664 * 0.02886 * 23 16 13 25 25 H 4.40644 * 5.51429 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47087 * 190.68128 * 3 2 1 27 27 H 1.09005 * 109.47133 * 70.68883 * 3 2 1 28 28 H 0.96999 * 119.99955 * 179.97438 * 8 7 5 29 29 H 1.07997 * 119.99840 * 359.95746 * 17 16 13 30 30 H 1.09004 * 109.47002 * 90.00091 * 21 20 18 31 31 H 1.09000 * 109.46640 * 209.99631 * 21 20 18 32 32 H 1.08995 * 109.47124 * 329.99677 * 21 20 18 33 33 H 1.07999 * 120.00496 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8994 1.0474 5 6 3.3040 -0.4357 2.3246 6 1 3.7798 -1.0592 3.0669 7 6 2.8641 0.8361 2.6652 8 7 1.8915 1.4011 1.9816 9 14 3.6522 1.7457 4.0939 10 1 5.1015 1.9272 3.8260 11 1 3.0072 3.0739 4.2513 12 1 3.4741 0.9585 5.3405 13 16 3.4890 -2.4760 0.6852 14 8 3.7538 -2.5175 -0.7102 15 8 4.4193 -2.9138 1.6661 16 6 2.0188 -3.4129 0.9407 17 6 1.3974 -4.0292 -0.1290 18 6 0.2427 -4.7656 0.0717 19 9 -0.3650 -5.3675 -0.9740 20 6 -0.2902 -4.8845 1.3443 21 6 -1.5477 -5.6858 1.5628 22 6 0.3309 -4.2685 2.4137 23 6 1.4892 -3.5365 2.2137 24 9 2.0994 -2.9383 3.2601 25 1 -1.0500 0.0000 0.0003 26 1 3.0088 1.0107 0.1905 27 1 3.0095 -0.3390 -0.9699 28 1 1.5838 2.2896 2.2198 29 1 1.8126 -3.9359 -1.1216 30 1 -1.2858 -6.7228 1.7733 31 1 -2.1001 -5.2722 2.4065 32 1 -2.1667 -5.6421 0.6667 33 1 -0.0849 -4.3608 3.4061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281413707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:10 Heat of formation + Delta-G solvation = -63.408942 kcal Electronic energy + Delta-G solvation = -24918.951691 eV Core-core repulsion = 20903.450984 eV Total energy + Delta-G solvation = -4015.500707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.70389 -48.45618 -38.51888 -36.45210 -35.84612 -34.46047 -32.76012 -32.16399 -31.24863 -29.84756 -27.13197 -26.69900 -23.97316 -22.81011 -21.75976 -18.74894 -18.26639 -17.72535 -17.05722 -16.80742 -16.68813 -16.33396 -15.62936 -14.96891 -14.90950 -14.72810 -14.44511 -14.07215 -13.83349 -13.45855 -13.37867 -13.34283 -13.04057 -12.54769 -12.42856 -11.97722 -11.93371 -11.45548 -11.36105 -11.29199 -11.04370 -10.87418 -10.76942 -10.51425 -10.37711 -10.01078 -9.71056 -9.32980 -9.01968 -8.86026 -8.44365 -8.22985 -6.75931 -4.06484 0.97875 1.31073 1.59168 3.03751 3.07562 3.14910 3.46153 3.71141 3.90787 4.10009 4.36904 4.45294 4.48131 4.56150 4.74947 4.83547 5.03230 5.31559 5.47643 5.49714 5.53466 5.61259 5.78498 5.86363 6.05807 6.17043 6.24526 6.34065 6.39698 6.63908 6.90462 7.04140 7.09137 7.12597 8.04291 8.39432 8.81920 8.85269 10.13576 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.006041 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.870268 B = 4634.234715 C = 4736.485133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.114 4.114 3 C 0.232 3.768 4 N -0.780 5.780 5 C -0.217 4.217 6 H 0.130 0.870 7 C 0.026 3.974 8 N -0.804 5.804 9 Si 0.936 3.064 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.265 1.265 13 S 2.492 3.508 14 O -0.996 6.996 15 O -0.975 6.975 16 C -0.670 4.670 17 C -0.038 4.038 18 C 0.054 3.946 19 F -0.141 7.141 20 C -0.067 4.067 21 C -0.114 4.114 22 C -0.157 4.157 23 C 0.191 3.809 24 F -0.112 7.112 25 H 0.196 0.804 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.280 0.720 29 H 0.152 0.848 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 -4.227 0.340 6.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.116 4.116 3 C 0.107 3.893 4 N -0.600 5.600 5 C -0.369 4.369 6 H 0.147 0.853 7 C -0.188 4.188 8 N -0.443 5.443 9 Si 0.760 3.240 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.190 1.190 13 S 2.589 3.411 14 O -0.986 6.986 15 O -0.964 6.964 16 C -0.745 4.745 17 C -0.057 4.057 18 C 0.034 3.966 19 F -0.119 7.119 20 C -0.069 4.069 21 C -0.170 4.170 22 C -0.176 4.176 23 C 0.170 3.830 24 F -0.090 7.090 25 H 0.213 0.787 26 H 0.134 0.866 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.169 0.831 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.772 -4.760 -0.159 6.742 hybrid contribution -1.141 0.222 0.900 1.470 sum -5.912 -4.538 0.742 7.490 Atomic orbital electron populations 1.24195 0.95304 1.03809 1.04953 1.23343 0.94538 0.97495 0.96274 1.18558 0.83949 0.96863 0.89931 1.55895 1.69918 1.19174 1.14992 1.20449 1.28009 0.98169 0.90309 0.85285 1.25777 0.95127 0.98663 0.99283 1.70236 1.20026 1.16079 1.37917 0.85810 0.79867 0.78246 0.80090 1.18863 1.20452 1.19004 1.14259 0.79225 0.73826 0.73752 1.93309 1.85861 1.86513 1.32911 1.93367 1.61644 1.81339 1.60037 1.32634 1.29635 1.15980 0.96204 1.20728 0.92419 0.92927 0.99671 1.17587 0.94993 1.00155 0.83839 1.91445 1.82547 1.81776 1.56160 1.19744 0.97497 0.98273 0.91369 1.20768 0.93749 0.99267 1.03264 1.20882 0.96069 1.00902 0.99744 1.17010 0.90860 0.91832 0.83277 1.91625 1.81733 1.80438 1.55182 0.78693 0.86550 0.89716 0.90844 0.83077 0.90483 0.90682 0.90859 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.40 19.25 29.55 0.57 -4.83 16 2 C -0.11 -2.50 11.21 -37.12 -0.42 -2.91 16 3 C 0.23 5.04 5.45 -6.83 -0.04 5.00 16 4 N -0.78 -18.14 2.88 -62.77 -0.18 -18.32 16 5 C -0.22 -5.12 8.43 -15.06 -0.13 -5.25 16 6 H 0.13 3.08 6.84 -52.49 -0.36 2.72 16 7 C 0.03 0.58 4.92 -17.43 -0.09 0.50 16 8 N -0.80 -18.14 8.97 55.49 0.50 -17.64 16 9 Si 0.94 17.61 29.62 -169.99 -5.04 12.58 16 10 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 11 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 12 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 13 S 2.49 58.78 5.31 -107.50 -0.57 58.21 16 14 O -1.00 -24.17 15.53 -57.17 -0.89 -25.06 16 15 O -0.97 -25.13 16.19 -57.17 -0.93 -26.05 16 16 C -0.67 -14.42 5.91 -39.52 -0.23 -14.65 16 17 C -0.04 -0.74 9.53 -39.52 -0.38 -1.12 16 18 C 0.05 0.95 7.24 -39.42 -0.29 0.66 16 19 F -0.14 -2.31 16.47 2.25 0.04 -2.27 16 20 C -0.07 -1.06 5.88 -104.56 -0.62 -1.68 16 21 C -0.11 -1.30 9.83 36.01 0.35 -0.95 16 22 C -0.16 -2.64 9.68 -39.52 -0.38 -3.02 16 23 C 0.19 3.92 7.21 -39.42 -0.28 3.64 16 24 F -0.11 -2.43 14.80 2.25 0.03 -2.40 16 25 H 0.20 3.33 7.80 -54.09 -0.42 2.91 16 26 H 0.12 2.49 6.46 -51.93 -0.34 2.15 16 27 H 0.08 1.72 6.95 -51.93 -0.36 1.36 16 28 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 29 H 0.15 2.85 7.33 -52.49 -0.38 2.47 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.07 0.80 7.64 -51.93 -0.40 0.41 16 33 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 311.25 15.07 4.69 4.69 Total: -1.00 -28.06 311.25 -6.92 -34.98 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -2.66 Total: 5.89 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -1.92 Total: -24.60 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.32 Total: -35.97 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -1.81 Total: -51.11 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.07 Total: -4.67 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.04 Total: 12.58 kcal Atomic # 16 Polarization: 58.78 SS G_CDS: -0.57 Total: 58.21 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.06 -6.92 -34.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281413707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.429 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds