Wall clock time and date at job start Fri Apr 10 2020 23:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47240 * 310.68168 * 3 2 1 5 5 C 1.36934 * 120.00210 * 273.01137 * 4 3 2 6 6 H 1.07993 * 120.00365 * 187.71267 * 5 4 3 7 7 C 1.38815 * 119.99833 * 7.71167 * 5 4 3 8 8 N 1.31621 * 119.99838 * 24.87546 * 7 5 4 9 9 Si 1.86798 * 120.00282 * 204.87362 * 7 5 4 10 10 H 1.48505 * 109.47116 * 59.99650 * 9 7 5 11 11 H 1.48491 * 109.47562 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46938 * 300.00384 * 9 7 5 13 13 S 1.65602 * 119.99738 * 93.29115 * 4 3 2 14 14 O 1.42093 * 106.40533 * 23.26141 * 13 4 3 15 15 O 1.42102 * 106.40104 * 156.18422 * 13 4 3 16 16 C 1.76196 * 107.21499 * 269.72073 * 13 4 3 17 17 C 1.38212 * 119.99984 * 114.99994 * 16 13 4 18 18 C 1.38426 * 120.00286 * 179.97438 * 17 16 13 19 19 F 1.35094 * 120.00136 * 179.97438 * 18 17 16 20 20 C 1.38478 * 119.99719 * 0.02562 * 18 17 16 21 21 C 1.50704 * 119.99577 * 179.97438 * 20 18 17 22 22 C 1.38156 * 120.00221 * 359.97438 * 20 18 17 23 23 C 1.38432 * 120.00429 * 294.72444 * 16 13 4 24 24 F 1.35095 * 119.99664 * 0.02886 * 23 16 13 25 25 H 4.40644 * 5.51429 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47087 * 190.68128 * 3 2 1 27 27 H 1.09005 * 109.47133 * 70.68883 * 3 2 1 28 28 H 0.96999 * 119.99955 * 179.97438 * 8 7 5 29 29 H 1.07997 * 119.99840 * 359.95746 * 17 16 13 30 30 H 1.09004 * 109.47002 * 90.00091 * 21 20 18 31 31 H 1.09000 * 109.46640 * 209.99631 * 21 20 18 32 32 H 1.08995 * 109.47124 * 329.99677 * 21 20 18 33 33 H 1.07999 * 120.00496 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8994 1.0474 5 6 3.3040 -0.4357 2.3246 6 1 3.7798 -1.0592 3.0669 7 6 2.8641 0.8361 2.6652 8 7 1.8915 1.4011 1.9816 9 14 3.6522 1.7457 4.0939 10 1 5.1015 1.9272 3.8260 11 1 3.0072 3.0739 4.2513 12 1 3.4741 0.9585 5.3405 13 16 3.4890 -2.4760 0.6852 14 8 3.7538 -2.5175 -0.7102 15 8 4.4193 -2.9138 1.6661 16 6 2.0188 -3.4129 0.9407 17 6 1.3974 -4.0292 -0.1290 18 6 0.2427 -4.7656 0.0717 19 9 -0.3650 -5.3675 -0.9740 20 6 -0.2902 -4.8845 1.3443 21 6 -1.5477 -5.6858 1.5628 22 6 0.3309 -4.2685 2.4137 23 6 1.4892 -3.5365 2.2137 24 9 2.0994 -2.9383 3.2601 25 1 -1.0500 0.0000 0.0003 26 1 3.0088 1.0107 0.1905 27 1 3.0095 -0.3390 -0.9699 28 1 1.5838 2.2896 2.2198 29 1 1.8126 -3.9359 -1.1216 30 1 -1.2858 -6.7228 1.7733 31 1 -2.1001 -5.2722 2.4065 32 1 -2.1667 -5.6421 0.6667 33 1 -0.0849 -4.3608 3.4061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281413707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:08 Heat of formation + Delta-G solvation = -79.573558 kcal Electronic energy + Delta-G solvation = -24919.652642 eV Core-core repulsion = 20903.450984 eV Total energy + Delta-G solvation = -4016.201658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.05730 -50.04482 -39.91492 -38.18201 -37.73237 -36.36549 -34.05184 -33.87571 -32.95076 -31.26064 -28.43432 -28.31932 -25.71460 -24.22417 -23.14943 -20.47274 -19.90630 -19.37075 -18.56735 -18.43816 -18.26191 -18.02110 -17.04146 -16.51482 -16.45688 -16.45111 -16.13274 -15.46590 -15.33669 -15.17228 -15.01684 -14.30995 -14.24909 -14.19539 -13.85556 -13.60899 -13.16152 -13.02871 -12.87041 -12.75974 -12.68223 -12.65637 -12.58452 -12.30560 -12.00806 -11.68753 -11.35250 -11.00161 -10.62962 -10.30363 -10.15592 -9.68865 -8.46826 -5.85513 -0.48514 -0.15989 -0.12698 1.51108 1.56834 1.65386 1.93751 2.12526 2.31299 2.43816 2.74883 2.81440 2.96601 3.07587 3.19184 3.43918 3.62694 3.89014 3.93042 4.11206 4.31774 4.40112 4.50687 4.61426 4.68674 4.79077 4.87602 4.92288 5.05353 5.08954 5.19599 5.35132 5.45071 5.68790 6.27952 6.62018 7.07663 7.18884 8.42524 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.006041 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.870268 B = 4634.234715 C = 4736.485133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.149 4.149 3 C 0.232 3.768 4 N -0.785 5.785 5 C -0.238 4.238 6 H 0.118 0.882 7 C 0.002 3.998 8 N -0.814 5.814 9 Si 0.993 3.007 10 H -0.263 1.263 11 H -0.268 1.268 12 H -0.266 1.266 13 S 2.491 3.509 14 O -1.015 7.015 15 O -1.007 7.007 16 C -0.695 4.695 17 C -0.053 4.053 18 C 0.054 3.946 19 F -0.132 7.132 20 C -0.051 4.051 21 C -0.113 4.113 22 C -0.148 4.148 23 C 0.164 3.836 24 F -0.127 7.127 25 H 0.228 0.772 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.286 0.714 29 H 0.147 0.853 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 -4.517 1.381 9.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.152 4.152 3 C 0.107 3.893 4 N -0.604 5.604 5 C -0.390 4.390 6 H 0.135 0.865 7 C -0.212 4.212 8 N -0.452 5.452 9 Si 0.814 3.186 10 H -0.188 1.188 11 H -0.193 1.193 12 H -0.191 1.191 13 S 2.593 3.407 14 O -1.005 7.005 15 O -0.997 6.997 16 C -0.773 4.773 17 C -0.073 4.073 18 C 0.034 3.966 19 F -0.111 7.111 20 C -0.052 4.052 21 C -0.169 4.169 22 C -0.167 4.167 23 C 0.143 3.857 24 F -0.105 7.105 25 H 0.244 0.756 26 H 0.133 0.867 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.165 0.835 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.200 -5.042 0.848 8.831 hybrid contribution -0.521 0.243 0.536 0.786 sum -7.721 -4.799 1.384 9.196 Atomic orbital electron populations 1.24972 0.96177 1.02331 1.03457 1.23552 0.95053 0.98883 0.97671 1.18567 0.84508 0.96469 0.89770 1.55882 1.70449 1.18894 1.15220 1.20532 1.29062 0.98868 0.90564 0.86476 1.26461 0.95114 0.98425 1.01191 1.70292 1.20141 1.16371 1.38377 0.84971 0.79031 0.77335 0.77221 1.18756 1.19285 1.19065 1.14310 0.79335 0.74165 0.72920 1.93256 1.86513 1.86952 1.33732 1.93301 1.63472 1.82113 1.60802 1.32237 1.29591 1.17922 0.97587 1.20756 0.93635 0.93832 0.99093 1.17647 0.94386 0.99653 0.84939 1.91466 1.82182 1.81464 1.56000 1.20267 0.98264 0.96790 0.89891 1.20949 0.91521 0.99714 1.04759 1.21278 0.94385 0.99179 1.01812 1.17412 0.92425 0.93213 0.82637 1.91580 1.82310 1.81000 1.55600 0.75565 0.86683 0.89349 0.90262 0.83538 0.88255 0.88163 0.90109 0.80435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.93 19.25 74.32 1.43 -8.50 16 2 C -0.15 -6.54 11.21 31.13 0.35 -6.19 16 3 C 0.23 10.32 5.45 84.58 0.46 10.78 16 4 N -0.78 -37.70 2.88 -352.52 -1.02 -38.72 16 5 C -0.24 -11.47 8.43 84.03 0.71 -10.76 16 6 H 0.12 5.83 6.84 -2.91 -0.02 5.81 16 7 C 0.00 0.07 4.92 84.86 0.42 0.49 16 8 N -0.81 -36.29 8.97 21.65 0.19 -36.10 16 9 Si 0.99 35.51 29.62 68.60 2.03 37.54 16 10 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 11 H -0.27 -9.07 7.11 99.48 0.71 -8.37 16 12 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 13 S 2.49 122.61 5.31 -56.49 -0.30 122.32 16 14 O -1.01 -51.48 15.53 -128.00 -1.99 -53.47 16 15 O -1.01 -54.51 16.19 -128.00 -2.07 -56.58 16 16 C -0.70 -30.55 5.91 22.31 0.13 -30.42 16 17 C -0.05 -2.11 9.53 22.31 0.21 -1.89 16 18 C 0.05 1.79 7.24 22.37 0.16 1.95 16 19 F -0.13 -4.06 16.47 44.97 0.74 -3.32 16 20 C -0.05 -1.44 5.88 -19.83 -0.12 -1.55 16 21 C -0.11 -2.04 9.83 71.24 0.70 -1.33 16 22 C -0.15 -4.60 9.68 22.31 0.22 -4.38 16 23 C 0.16 6.71 7.21 22.37 0.16 6.87 16 24 F -0.13 -5.61 14.80 44.97 0.67 -4.94 16 25 H 0.23 7.10 7.80 -4.42 -0.03 7.07 16 26 H 0.12 5.05 6.46 -2.39 -0.02 5.03 16 27 H 0.09 3.76 6.95 -2.38 -0.02 3.74 16 28 H 0.29 11.87 8.31 -92.71 -0.77 11.10 16 29 H 0.15 5.73 7.33 -2.91 -0.02 5.71 16 30 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 32 H 0.08 1.39 7.64 -2.39 -0.02 1.38 16 33 H 0.18 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -61.51 311.25 4.25 -57.25 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 1.16 Total: 20.96 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 4.83 Total: -44.94 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -0.82 Total: -74.82 kcal Atomic # 8 Polarization: -105.99 SS G_CDS: -4.06 Total: -110.05 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 1.41 Total: -8.27 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Atomic # 16 Polarization: 122.61 SS G_CDS: -0.30 Total: 122.32 kcal Total: -61.51 4.25 -57.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281413707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.322 kcal (2) G-P(sol) polarization free energy of solvation -61.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds