Wall clock time and date at job start Fri Apr 10 2020 23:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47023 * 265.18832 * 3 2 1 5 5 C 1.36930 * 119.99997 * 273.65900 * 4 3 2 6 6 H 1.08008 * 119.99773 * 180.02562 * 5 4 3 7 7 C 1.38811 * 120.00238 * 0.03243 * 5 4 3 8 8 N 1.31621 * 120.00293 * 27.19660 * 7 5 4 9 9 Si 1.86804 * 120.00043 * 207.19780 * 7 5 4 10 10 H 1.48507 * 109.47173 * 84.98705 * 9 7 5 11 11 H 1.48501 * 109.47291 * 204.98876 * 9 7 5 12 12 H 1.48506 * 109.46986 * 324.99229 * 9 7 5 13 13 S 1.65602 * 119.99727 * 93.65985 * 4 3 2 14 14 O 1.42104 * 104.27286 * 153.92635 * 13 4 3 15 15 O 1.42102 * 104.27581 * 26.07351 * 13 4 3 16 16 C 1.81390 * 104.45116 * 270.00171 * 13 4 3 17 17 C 1.50700 * 109.47421 * 180.02562 * 16 13 4 18 18 C 1.38418 * 120.03018 * 89.99308 * 17 16 13 19 19 F 1.35102 * 120.01014 * 359.70795 * 18 17 16 20 20 C 1.38469 * 119.97692 * 179.97438 * 18 17 16 21 21 C 1.38209 * 120.02661 * 0.02562 * 20 18 17 22 22 C 1.38209 * 120.04926 * 359.97438 * 21 20 18 23 23 C 1.38424 * 120.02300 * 269.98012 * 17 16 13 24 24 F 1.35098 * 120.01020 * 359.97438 * 23 17 16 25 25 H 4.40644 * 5.51496 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.46602 * 145.19362 * 3 2 1 27 27 H 1.09001 * 109.47409 * 25.19213 * 3 2 1 28 28 H 0.96995 * 120.00435 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47544 * 59.99544 * 16 13 4 30 30 H 1.09005 * 109.47190 * 299.99951 * 16 13 4 31 31 H 1.07996 * 119.98792 * 179.97438 * 20 18 17 32 32 H 1.07994 * 119.97849 * 180.02562 * 21 20 18 33 33 H 1.08000 * 119.98912 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1167 1.3764 5 6 3.2906 1.3523 1.9455 6 1 3.6509 1.4379 2.9601 7 6 2.9858 2.4949 1.2185 8 7 2.0890 2.4432 0.2565 9 14 3.8483 4.1060 1.6056 10 1 5.1427 4.1615 0.8797 11 1 2.9919 5.2413 1.1779 12 1 4.0963 4.1961 3.0671 13 16 3.4972 -1.2464 2.2439 14 8 4.4630 -0.8119 3.1914 15 8 3.8239 -2.2140 1.2557 16 6 1.9437 -1.6825 3.0726 17 6 2.1487 -2.9226 3.9039 18 6 2.5523 -2.8132 5.2234 19 9 2.7685 -1.5945 5.7650 20 6 2.7398 -3.9534 5.9864 21 6 2.5246 -5.2004 5.4309 22 6 2.1216 -5.3110 4.1135 23 6 1.9332 -4.1721 3.3486 24 9 1.5384 -4.2804 2.0611 25 1 -1.0501 0.0002 0.0000 26 1 3.0089 0.8446 -0.5866 27 1 3.0098 -0.9291 -0.4374 28 1 1.8763 3.2415 -0.2517 29 1 1.1729 -1.8692 2.3248 30 1 1.6327 -0.8606 3.7175 31 1 3.0552 -3.8682 7.0158 32 1 2.6707 -6.0892 6.0268 33 1 1.9540 -6.2860 3.6802 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281427540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:14 Heat of formation + Delta-G solvation = -58.579277 kcal Electronic energy + Delta-G solvation = -24559.727342 eV Core-core repulsion = 20544.436065 eV Total energy + Delta-G solvation = -4015.291277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -48.72242 -48.70124 -38.70061 -36.47059 -35.69873 -34.49477 -32.73655 -32.22501 -31.24711 -30.18999 -26.96526 -26.72273 -23.94682 -22.72069 -21.88083 -18.61698 -18.07176 -17.87010 -17.13134 -16.96174 -16.56754 -16.03021 -15.78387 -15.38775 -14.98310 -14.87059 -14.74083 -14.53925 -14.18293 -13.58433 -13.45192 -13.36521 -12.61425 -12.47233 -12.29895 -11.96064 -11.92722 -11.45757 -11.34503 -11.26078 -11.03097 -10.83757 -10.71891 -10.48235 -10.35159 -10.23949 -9.78211 -9.37139 -9.01949 -8.65635 -8.57710 -8.28948 -6.80339 -4.00925 0.91709 1.05511 1.59029 3.02965 3.09591 3.14047 3.45098 3.55918 3.89710 4.01852 4.05653 4.29936 4.49484 4.54345 4.66060 4.75563 4.84476 5.14322 5.25244 5.38427 5.48057 5.76116 5.85029 6.00746 6.07131 6.17342 6.18832 6.26435 6.34851 6.69593 6.88030 6.88778 7.03011 7.14784 8.02099 8.38752 8.74205 8.82864 10.11916 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.005491 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.443038 B = 5097.631402 C = 5868.072872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.119 4.119 3 C 0.219 3.781 4 N -0.782 5.782 5 C -0.221 4.221 6 H 0.128 0.872 7 C 0.024 3.976 8 N -0.807 5.807 9 Si 0.937 3.063 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.262 1.262 13 S 2.444 3.556 14 O -0.975 6.975 15 O -0.989 6.989 16 C -0.627 4.627 17 C -0.130 4.130 18 C 0.126 3.874 19 F -0.120 7.120 20 C -0.164 4.164 21 C -0.077 4.077 22 C -0.164 4.164 23 C 0.125 3.875 24 F -0.122 7.122 25 H 0.200 0.800 26 H 0.126 0.874 27 H 0.086 0.914 28 H 0.280 0.720 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -7.380 5.169 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.121 4.121 3 C 0.094 3.906 4 N -0.602 5.602 5 C -0.371 4.371 6 H 0.145 0.855 7 C -0.190 4.190 8 N -0.446 5.446 9 Si 0.761 3.239 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.186 1.186 13 S 2.541 3.459 14 O -0.964 6.964 15 O -0.978 6.978 16 C -0.739 4.739 17 C -0.133 4.133 18 C 0.106 3.894 19 F -0.098 7.098 20 C -0.183 4.183 21 C -0.096 4.096 22 C -0.183 4.183 23 C 0.105 3.895 24 F -0.100 7.100 25 H 0.217 0.783 26 H 0.143 0.857 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.660 -8.019 5.143 9.670 hybrid contribution -1.098 1.095 0.206 1.564 sum -2.757 -6.924 5.349 9.173 Atomic orbital electron populations 1.24325 0.95405 1.06725 1.01950 1.23590 0.94703 0.95199 0.98635 1.18874 0.83695 1.03081 0.84953 1.55929 1.69258 1.18665 1.16352 1.20406 1.32556 0.81534 1.02642 0.85479 1.25704 0.95826 1.00499 0.96928 1.70274 1.24089 1.30829 1.19405 0.85741 0.79352 0.78758 0.80001 1.19326 1.20504 1.18554 1.16241 0.81276 0.74416 0.73988 1.93352 1.59431 1.79734 1.63858 1.93339 1.84601 1.62370 1.57519 1.30368 1.32075 1.00385 1.11074 1.19471 1.05161 0.94568 0.94133 1.17265 1.00367 0.81104 0.90656 1.91557 1.91793 1.41150 1.85346 1.21166 1.04650 0.91239 1.01227 1.20758 0.97555 0.97118 0.94136 1.21159 1.04328 0.97812 0.95012 1.17264 0.99492 0.92944 0.79790 1.91548 1.87669 1.96670 1.34088 0.78329 0.85653 0.89639 0.90858 0.85919 0.85608 0.83982 0.84034 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.39 19.25 29.55 0.57 -4.82 16 2 C -0.12 -2.65 11.69 -37.12 -0.43 -3.08 16 3 C 0.22 4.97 5.43 -6.83 -0.04 4.94 16 4 N -0.78 -18.81 2.81 -62.77 -0.18 -18.99 16 5 C -0.22 -5.35 9.37 -15.06 -0.14 -5.50 16 6 H 0.13 3.06 7.27 -52.48 -0.38 2.68 16 7 C 0.02 0.55 4.98 -17.43 -0.09 0.46 16 8 N -0.81 -18.54 9.04 55.49 0.50 -18.04 16 9 Si 0.94 17.96 29.63 -169.99 -5.04 12.92 16 10 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 11 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 12 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 13 S 2.44 59.11 5.37 -107.50 -0.58 58.54 16 14 O -0.97 -25.69 16.81 -57.54 -0.97 -26.66 16 15 O -0.99 -25.37 16.54 -57.54 -0.95 -26.32 16 16 C -0.63 -13.31 5.95 36.01 0.21 -13.09 16 17 C -0.13 -2.54 5.15 -104.49 -0.54 -3.07 16 18 C 0.13 2.26 7.24 -39.43 -0.29 1.97 16 19 F -0.12 -2.31 16.48 2.25 0.04 -2.27 16 20 C -0.16 -2.23 10.02 -39.51 -0.40 -2.63 16 21 C -0.08 -0.90 10.04 -39.60 -0.40 -1.30 16 22 C -0.16 -2.23 10.03 -39.51 -0.40 -2.63 16 23 C 0.13 2.23 7.24 -39.43 -0.29 1.95 16 24 F -0.12 -2.32 16.48 2.25 0.04 -2.28 16 25 H 0.20 3.27 7.80 -54.09 -0.42 2.85 16 26 H 0.13 2.84 6.02 -51.93 -0.31 2.53 16 27 H 0.09 1.86 6.84 -51.93 -0.36 1.50 16 28 H 0.28 6.02 8.31 -40.82 -0.34 5.68 16 29 H 0.12 2.55 7.64 -51.92 -0.40 2.15 16 30 H 0.13 2.60 7.64 -51.92 -0.40 2.21 16 31 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -29.69 316.58 -7.25 -36.94 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -2.67 Total: 8.20 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -2.21 Total: -26.79 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.33 Total: -37.03 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -1.92 Total: -52.98 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.56 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.04 Total: 12.92 kcal Atomic # 16 Polarization: 59.11 SS G_CDS: -0.58 Total: 58.54 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.69 -7.25 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281427540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.644 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds