Wall clock time and date at job start Fri Apr 10 2020 23:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47023 * 265.18832 * 3 2 1 5 5 C 1.36930 * 119.99997 * 273.65900 * 4 3 2 6 6 H 1.08008 * 119.99773 * 180.02562 * 5 4 3 7 7 C 1.38811 * 120.00238 * 0.03243 * 5 4 3 8 8 N 1.31621 * 120.00293 * 27.19660 * 7 5 4 9 9 Si 1.86804 * 120.00043 * 207.19780 * 7 5 4 10 10 H 1.48507 * 109.47173 * 84.98705 * 9 7 5 11 11 H 1.48501 * 109.47291 * 204.98876 * 9 7 5 12 12 H 1.48506 * 109.46986 * 324.99229 * 9 7 5 13 13 S 1.65602 * 119.99727 * 93.65985 * 4 3 2 14 14 O 1.42104 * 104.27286 * 153.92635 * 13 4 3 15 15 O 1.42102 * 104.27581 * 26.07351 * 13 4 3 16 16 C 1.81390 * 104.45116 * 270.00171 * 13 4 3 17 17 C 1.50700 * 109.47421 * 180.02562 * 16 13 4 18 18 C 1.38418 * 120.03018 * 89.99308 * 17 16 13 19 19 F 1.35102 * 120.01014 * 359.70795 * 18 17 16 20 20 C 1.38469 * 119.97692 * 179.97438 * 18 17 16 21 21 C 1.38209 * 120.02661 * 0.02562 * 20 18 17 22 22 C 1.38209 * 120.04926 * 359.97438 * 21 20 18 23 23 C 1.38424 * 120.02300 * 269.98012 * 17 16 13 24 24 F 1.35098 * 120.01020 * 359.97438 * 23 17 16 25 25 H 4.40644 * 5.51496 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.46602 * 145.19362 * 3 2 1 27 27 H 1.09001 * 109.47409 * 25.19213 * 3 2 1 28 28 H 0.96995 * 120.00435 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47544 * 59.99544 * 16 13 4 30 30 H 1.09005 * 109.47190 * 299.99951 * 16 13 4 31 31 H 1.07996 * 119.98792 * 179.97438 * 20 18 17 32 32 H 1.07994 * 119.97849 * 180.02562 * 21 20 18 33 33 H 1.08000 * 119.98912 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1167 1.3764 5 6 3.2906 1.3523 1.9455 6 1 3.6509 1.4379 2.9601 7 6 2.9858 2.4949 1.2185 8 7 2.0890 2.4432 0.2565 9 14 3.8483 4.1060 1.6056 10 1 5.1427 4.1615 0.8797 11 1 2.9919 5.2413 1.1779 12 1 4.0963 4.1961 3.0671 13 16 3.4972 -1.2464 2.2439 14 8 4.4630 -0.8119 3.1914 15 8 3.8239 -2.2140 1.2557 16 6 1.9437 -1.6825 3.0726 17 6 2.1487 -2.9226 3.9039 18 6 2.5523 -2.8132 5.2234 19 9 2.7685 -1.5945 5.7650 20 6 2.7398 -3.9534 5.9864 21 6 2.5246 -5.2004 5.4309 22 6 2.1216 -5.3110 4.1135 23 6 1.9332 -4.1721 3.3486 24 9 1.5384 -4.2804 2.0611 25 1 -1.0501 0.0002 0.0000 26 1 3.0089 0.8446 -0.5866 27 1 3.0098 -0.9291 -0.4374 28 1 1.8763 3.2415 -0.2517 29 1 1.1729 -1.8692 2.3248 30 1 1.6327 -0.8606 3.7175 31 1 3.0552 -3.8682 7.0158 32 1 2.6707 -6.0892 6.0268 33 1 1.9540 -6.2860 3.6802 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281427540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:13 Heat of formation + Delta-G solvation = -76.849854 kcal Electronic energy + Delta-G solvation = -24560.519614 eV Core-core repulsion = 20544.436065 eV Total energy + Delta-G solvation = -4016.083549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -50.09682 -50.08173 -39.89212 -38.25451 -37.68209 -36.49077 -34.09816 -33.95694 -32.99553 -31.35622 -28.53493 -28.35658 -25.74362 -23.94175 -23.15564 -20.42641 -19.77338 -19.20893 -18.82016 -18.47384 -18.31725 -17.51943 -17.07434 -16.71211 -16.63781 -16.39078 -16.36324 -16.23732 -15.50759 -15.37631 -15.10198 -14.71268 -14.22590 -13.91378 -13.77386 -13.66187 -13.18983 -13.18317 -12.80073 -12.69661 -12.68620 -12.63256 -12.51242 -12.33723 -12.05351 -11.90088 -11.49257 -11.08880 -10.73300 -10.24534 -9.85434 -9.79013 -8.54860 -5.85333 -0.58208 -0.13218 0.04755 1.46514 1.53985 1.60851 1.82753 2.26530 2.29140 2.32087 2.57006 2.72709 2.81591 3.13963 3.30084 3.39630 3.44142 3.77102 3.81921 3.86293 4.15130 4.28528 4.40639 4.51663 4.78656 4.82266 4.89842 4.94255 4.99133 5.09317 5.13052 5.30579 5.40840 5.70999 6.21260 6.57635 7.00960 7.07520 8.38271 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.005491 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.443038 B = 5097.631402 C = 5868.072872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.163 4.163 3 C 0.221 3.779 4 N -0.793 5.793 5 C -0.253 4.253 6 H 0.118 0.882 7 C -0.002 4.002 8 N -0.820 5.820 9 Si 0.997 3.003 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.262 1.262 13 S 2.449 3.551 14 O -1.004 7.004 15 O -1.011 7.011 16 C -0.614 4.614 17 C -0.171 4.171 18 C 0.094 3.906 19 F -0.139 7.139 20 C -0.152 4.152 21 C -0.051 4.051 22 C -0.152 4.152 23 C 0.095 3.905 24 F -0.139 7.139 25 H 0.237 0.763 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.287 0.713 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.179 0.821 32 H 0.201 0.799 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.956 -8.862 6.677 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.165 4.165 3 C 0.096 3.904 4 N -0.613 5.613 5 C -0.403 4.403 6 H 0.135 0.865 7 C -0.214 4.214 8 N -0.458 5.458 9 Si 0.818 3.182 10 H -0.191 1.191 11 H -0.192 1.192 12 H -0.186 1.186 13 S 2.550 3.450 14 O -0.993 6.993 15 O -1.001 7.001 16 C -0.730 4.730 17 C -0.174 4.174 18 C 0.074 3.926 19 F -0.117 7.117 20 C -0.170 4.170 21 C -0.068 4.068 22 C -0.170 4.170 23 C 0.075 3.925 24 F -0.117 7.117 25 H 0.253 0.747 26 H 0.139 0.861 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.196 0.804 32 H 0.218 0.782 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.237 -9.492 6.616 11.785 hybrid contribution -1.015 1.387 -0.180 1.728 sum -3.252 -8.106 6.436 10.849 Atomic orbital electron populations 1.25198 0.96310 1.04696 0.99916 1.23737 0.95185 0.97078 1.00527 1.18790 0.84584 1.02724 0.84326 1.55806 1.70239 1.18452 1.16759 1.20522 1.34575 0.82247 1.02981 0.86472 1.26439 0.95796 1.02671 0.96467 1.70319 1.24184 1.31835 1.19463 0.84874 0.78373 0.75264 0.79650 1.19082 1.19238 1.18645 1.15925 0.81458 0.74104 0.73505 1.93294 1.61161 1.80274 1.64608 1.93286 1.85400 1.63124 1.58297 1.30004 1.29975 1.01895 1.11167 1.19559 1.08321 0.94366 0.95195 1.17765 1.02045 0.81913 0.90850 1.91504 1.92190 1.42559 1.85454 1.21705 1.02541 0.90336 1.02424 1.21486 0.93721 0.98204 0.93411 1.21705 1.02115 0.97759 0.95421 1.17746 1.01148 0.93885 0.79763 1.91497 1.88128 1.96741 1.35347 0.74689 0.86123 0.89817 0.90180 0.86325 0.86206 0.80402 0.78191 0.80359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.73 19.25 74.32 1.43 -8.30 16 2 C -0.16 -7.41 11.69 31.13 0.36 -7.05 16 3 C 0.22 10.47 5.43 84.57 0.46 10.93 16 4 N -0.79 -39.99 2.81 -352.51 -0.99 -40.98 16 5 C -0.25 -12.78 9.37 84.03 0.79 -11.99 16 6 H 0.12 5.98 7.27 -2.91 -0.02 5.96 16 7 C 0.00 -0.07 4.98 84.86 0.42 0.35 16 8 N -0.82 -37.99 9.04 21.65 0.20 -37.79 16 9 Si 1.00 36.81 29.63 68.60 2.03 38.84 16 10 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 11 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 12 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 13 S 2.45 124.51 5.37 -56.49 -0.30 124.21 16 14 O -1.00 -55.60 16.81 -127.65 -2.15 -57.75 16 15 O -1.01 -54.34 16.54 -127.65 -2.11 -56.45 16 16 C -0.61 -27.41 5.95 71.24 0.42 -26.99 16 17 C -0.17 -6.80 5.15 -19.78 -0.10 -6.90 16 18 C 0.09 3.34 7.24 22.37 0.16 3.50 16 19 F -0.14 -5.47 16.48 44.97 0.74 -4.73 16 20 C -0.15 -3.60 10.02 22.32 0.22 -3.38 16 21 C -0.05 -0.91 10.04 22.26 0.22 -0.69 16 22 C -0.15 -3.57 10.03 22.32 0.22 -3.34 16 23 C 0.09 3.32 7.24 22.37 0.16 3.49 16 24 F -0.14 -5.38 16.48 44.97 0.74 -4.64 16 25 H 0.24 7.22 7.80 -4.41 -0.03 7.18 16 26 H 0.12 5.72 6.02 -2.39 -0.01 5.71 16 27 H 0.08 3.87 6.84 -2.39 -0.02 3.85 16 28 H 0.29 12.25 8.31 -92.71 -0.77 11.48 16 29 H 0.12 5.23 7.64 -2.39 -0.02 5.21 16 30 H 0.12 5.32 7.64 -2.39 -0.02 5.30 16 31 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -68.53 316.58 4.10 -64.44 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 1.16 Total: 25.21 kcal Atomic # 6 Polarization: -55.15 SS G_CDS: 4.78 Total: -50.36 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -0.80 Total: -78.77 kcal Atomic # 8 Polarization: -109.94 SS G_CDS: -4.26 Total: -114.20 kcal Atomic # 9 Polarization: -10.84 SS G_CDS: 1.48 Total: -9.36 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Atomic # 16 Polarization: 124.51 SS G_CDS: -0.30 Total: 124.21 kcal Total: -68.53 4.10 -64.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281427540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.413 kcal (2) G-P(sol) polarization free energy of solvation -68.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds