Wall clock time and date at job start Fri Apr 10 2020 23:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47301 * 7.10524 * 3 2 1 5 5 C 1.36927 * 119.99843 * 273.93184 * 4 3 2 6 6 H 1.07997 * 119.99834 * 127.77457 * 5 4 3 7 7 C 1.38967 * 120.00005 * 307.78071 * 5 4 3 8 8 N 1.31423 * 120.00064 * 2.29868 * 7 5 4 9 9 Si 1.86800 * 119.99899 * 182.29662 * 7 5 4 10 10 H 1.48504 * 109.47067 * 59.99704 * 9 7 5 11 11 H 1.48503 * 109.47070 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47453 * 299.99948 * 9 7 5 13 13 C 1.34776 * 120.00505 * 93.93231 * 4 3 2 14 14 O 1.21810 * 119.99646 * 4.37382 * 13 4 3 15 15 C 1.41598 * 120.00371 * 184.37086 * 13 4 3 16 16 S 1.75814 * 125.47707 * 354.07032 * 15 13 4 17 17 C 1.70574 * 91.66370 * 180.24392 * 16 15 13 18 18 C 1.50701 * 124.42148 * 179.80659 * 17 16 15 19 19 C 1.33645 * 111.16535 * 359.80998 * 17 16 15 20 20 C 1.37403 * 125.48063 * 173.97124 * 15 13 4 21 21 O 1.35777 * 123.48507 * 359.95787 * 20 15 13 22 22 C 1.42899 * 117.00578 * 179.73396 * 21 20 15 23 23 F 1.39906 * 109.46733 * 59.99728 * 22 21 20 24 24 F 1.39907 * 109.46759 * 300.00452 * 22 21 20 25 25 H 4.40639 * 5.51381 * 179.97438 * 4 1 2 26 26 H 1.08994 * 109.47132 * 247.09863 * 3 2 1 27 27 H 1.09007 * 109.47122 * 127.09893 * 3 2 1 28 28 H 0.97000 * 119.99931 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47380 * 270.00554 * 18 17 16 30 30 H 1.09009 * 109.46793 * 30.00111 * 18 17 16 31 31 H 1.08997 * 109.47253 * 149.99596 * 18 17 16 32 32 H 1.07996 * 122.45504 * 179.97438 * 19 17 16 33 33 H 1.08993 * 109.47508 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3697 -0.1708 5 6 3.2870 -2.1834 0.9199 6 1 2.8357 -3.1645 0.9287 7 6 4.0217 -1.7466 2.0157 8 7 4.5326 -0.5357 2.0238 9 14 4.2829 -2.8804 3.4770 10 1 4.9957 -4.1050 3.0322 11 1 5.0933 -2.1819 4.5069 12 1 2.9671 -3.2557 4.0539 13 6 3.4354 -1.8296 -1.4016 14 8 3.3767 -1.0826 -2.3619 15 6 3.8192 -3.1811 -1.5783 16 16 4.0938 -4.3411 -0.2860 17 6 4.4863 -5.5684 -1.4038 18 6 4.8723 -6.9748 -1.0241 19 6 4.4069 -5.1201 -2.6603 20 6 4.0351 -3.7973 -2.7873 21 8 3.9018 -3.1682 -3.9831 22 6 4.1663 -3.9408 -5.1558 23 9 3.2895 -5.0299 -5.2042 24 9 5.4855 -4.4054 -5.1203 25 1 -1.0497 -0.0005 0.0001 26 1 3.0092 0.4007 0.9466 27 1 3.0091 0.6207 -0.8197 28 1 5.0457 -0.2310 2.7885 29 1 5.9529 -7.0326 -0.8945 30 1 4.3794 -7.2474 -0.0908 31 1 4.5635 -7.6616 -1.8121 32 1 4.6187 -5.7470 -3.5138 33 1 4.0239 -3.3196 -6.0400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281487077.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:18 Heat of formation + Delta-G solvation = -105.831552 kcal Electronic energy + Delta-G solvation = -24247.660622 eV Core-core repulsion = 20230.320332 eV Total energy + Delta-G solvation = -4017.340290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.24658 -48.28623 -41.10609 -40.01414 -37.33295 -36.85919 -34.38324 -33.38054 -32.48529 -29.34986 -27.96902 -27.30085 -26.16206 -23.89066 -22.34145 -20.93515 -20.17366 -19.36282 -18.99068 -18.88450 -18.17515 -17.85155 -17.07434 -16.46415 -16.27003 -16.09165 -15.67443 -15.50077 -15.01072 -14.95774 -14.65994 -14.56372 -14.30370 -14.23576 -14.17111 -13.88223 -13.41611 -13.34528 -13.20576 -12.94381 -12.81195 -12.62109 -12.24268 -12.11829 -11.58417 -11.40358 -11.06552 -10.82659 -10.53186 -9.65007 -9.43929 -8.95543 -8.41313 -6.42588 -0.32872 0.70605 1.17753 1.37388 1.46029 1.51162 1.57124 1.79582 2.00242 2.01736 2.25586 2.50937 2.54525 2.95623 3.14025 3.49101 3.71035 3.74862 3.82187 4.18758 4.42359 4.47506 4.63302 4.77395 4.80722 5.01387 5.08300 5.14503 5.17299 5.27362 5.35471 5.93180 5.96190 6.22456 6.77651 6.92334 7.38594 7.86070 8.58581 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.006176 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.435707 B = 4532.774885 C = 5888.944881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.220 4.220 3 C 0.210 3.790 4 N -0.449 5.449 5 C -0.360 4.360 6 H 0.106 0.894 7 C 0.030 3.970 8 N -0.878 5.878 9 Si 0.959 3.041 10 H -0.235 1.235 11 H -0.274 1.274 12 H -0.256 1.256 13 C 0.543 3.457 14 O -0.619 6.619 15 C -0.323 4.323 16 S 0.342 5.658 17 C -0.234 4.234 18 C -0.081 4.081 19 C -0.227 4.227 20 C 0.135 3.865 21 O -0.309 6.309 22 C 0.403 3.597 23 F -0.207 7.207 24 F -0.208 7.208 25 H 0.256 0.744 26 H 0.120 0.880 27 H 0.064 0.936 28 H 0.283 0.717 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -11.072 -4.064 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.221 4.221 3 C 0.088 3.912 4 N -0.167 5.167 5 C -0.493 4.493 6 H 0.122 0.878 7 C -0.178 4.178 8 N -0.512 5.512 9 Si 0.778 3.222 10 H -0.158 1.158 11 H -0.198 1.198 12 H -0.180 1.180 13 C 0.337 3.663 14 O -0.508 6.508 15 C -0.443 4.443 16 S 0.615 5.385 17 C -0.353 4.353 18 C -0.139 4.139 19 C -0.257 4.257 20 C 0.075 3.925 21 O -0.226 6.226 22 C 0.314 3.686 23 F -0.189 7.189 24 F -0.190 7.190 25 H 0.272 0.728 26 H 0.137 0.863 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.165 0.835 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.134 -10.411 -2.902 10.809 hybrid contribution 0.173 -0.054 -1.259 1.272 sum 0.040 -10.466 -4.162 11.263 Atomic orbital electron populations 1.25620 0.96427 0.98930 1.01688 1.24406 0.95953 1.01572 1.00146 1.18369 0.83227 0.86123 1.03488 1.43288 1.56507 1.11757 1.05196 1.19496 1.34741 0.99044 0.96031 0.87805 1.26507 0.92356 0.97354 1.01609 1.69759 1.31075 1.18030 1.32325 0.85484 0.80027 0.79615 0.77027 1.15841 1.19846 1.18044 1.16477 0.79184 0.86818 0.83865 1.90643 1.59833 1.59015 1.41349 1.22887 1.24005 1.00576 0.96807 1.84216 1.58888 0.93025 1.02356 1.25906 1.02688 1.06134 1.00612 1.20486 1.02808 0.87387 1.03177 1.19876 1.12561 0.93505 0.99755 1.18315 0.98143 0.91753 0.84285 1.86789 1.83835 1.39441 1.12537 1.24279 0.71736 0.81157 0.91451 1.93059 1.69884 1.59368 1.96582 1.93060 1.38818 1.90313 1.96779 0.72780 0.86287 0.91766 0.90684 0.89159 0.89550 0.89571 0.83484 0.75585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.03 19.25 74.32 1.43 -6.60 16 2 C -0.22 -10.31 13.65 31.13 0.42 -9.89 16 3 C 0.21 10.89 5.59 84.57 0.47 11.36 16 4 N -0.45 -23.97 2.42 -655.48 -1.59 -25.56 16 5 C -0.36 -17.80 6.62 84.07 0.56 -17.24 16 6 H 0.11 4.86 5.37 -16.84 -0.09 4.77 16 7 C 0.03 1.40 5.37 84.93 0.46 1.86 16 8 N -0.88 -44.46 11.22 21.67 0.24 -44.22 16 9 Si 0.96 35.28 29.55 68.60 2.03 37.31 16 10 H -0.24 -7.80 7.11 99.48 0.71 -7.09 16 11 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 12 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 13 C 0.54 29.92 7.43 85.07 0.63 30.55 16 14 O -0.62 -36.97 15.36 11.84 0.18 -36.79 16 15 C -0.32 -15.48 6.15 22.90 0.14 -15.34 16 16 S 0.34 13.19 18.10 -56.49 -1.02 12.17 16 17 C -0.23 -7.56 6.27 24.64 0.15 -7.41 16 18 C -0.08 -1.76 10.31 71.24 0.73 -1.02 16 19 C -0.23 -8.07 8.25 21.17 0.17 -7.90 16 20 C 0.13 5.81 6.46 22.01 0.14 5.95 16 21 O -0.31 -12.64 9.32 -74.51 -0.69 -13.33 16 22 C 0.40 11.13 5.98 113.37 0.68 11.81 16 23 F -0.21 -5.86 15.84 44.97 0.71 -5.15 16 24 F -0.21 -5.99 15.84 44.97 0.71 -5.28 16 25 H 0.26 6.74 7.80 -4.43 -0.03 6.70 16 26 H 0.12 6.29 5.72 -2.39 -0.01 6.28 16 27 H 0.06 3.45 7.25 -2.38 -0.02 3.43 16 28 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.15 4.67 5.88 -2.91 -0.02 4.65 16 33 H 0.23 3.71 8.14 -2.39 -0.02 3.69 16 Total: -1.00 -70.17 313.21 7.67 -62.50 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 1.10 Total: 22.21 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 6.00 Total: -3.86 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -1.34 Total: -69.78 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.51 Total: -50.12 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 1.42 Total: -10.42 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Atomic # 16 Polarization: 13.19 SS G_CDS: -1.02 Total: 12.17 kcal Total: -70.17 7.67 -62.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281487077.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.335 kcal (2) G-P(sol) polarization free energy of solvation -70.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds