Wall clock time and date at job start Fri Apr 10 2020 23:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00090 * 2 1 4 4 H 1.48504 * 109.47232 * 240.00161 * 3 2 1 5 5 H 1.48497 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47175 * 120.00304 * 3 2 1 7 7 C 1.37882 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46802 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.46866 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54326 * 68.37579 * 11 10 9 13 13 O 1.42097 * 110.54474 * 291.62182 * 11 10 9 14 14 N 1.65608 * 104.44945 * 179.97438 * 11 10 9 15 15 C 1.46529 * 124.95957 * 89.99783 * 14 11 10 16 16 C 1.53743 * 105.18843 * 180.02562 * 15 14 11 17 17 C 1.51222 * 104.54981 * 359.97438 * 16 15 14 18 18 C 1.38178 * 130.97461 * 179.97438 * 17 16 15 19 19 C 1.38331 * 120.14370 * 179.20675 * 18 17 16 20 20 Cl 1.73595 * 120.09794 * 180.26867 * 19 18 17 21 21 C 1.38396 * 119.80274 * 0.73434 * 19 18 17 22 22 C 1.37835 * 120.21565 * 359.55060 * 21 19 18 23 23 C 1.38583 * 108.54314 * 359.74040 * 17 16 15 24 24 H 0.96992 * 119.99792 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47347 * 59.99998 * 9 7 2 26 26 H 1.08998 * 109.46476 * 299.99776 * 9 7 2 27 27 H 1.08996 * 109.47800 * 59.99756 * 10 9 7 28 28 H 1.09006 * 109.47089 * 299.99421 * 10 9 7 29 29 H 1.08999 * 110.30397 * 298.93068 * 15 14 11 30 30 H 1.08998 * 110.30177 * 61.07527 * 15 14 11 31 31 H 1.08998 * 110.42197 * 118.76743 * 16 15 14 32 32 H 1.09010 * 110.42284 * 241.11641 * 16 15 14 33 33 H 1.08008 * 119.92671 * 0.04848 * 18 17 16 34 34 H 1.08003 * 119.89359 * 179.53280 * 21 19 18 35 35 H 1.08003 * 119.84892 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3382 -5.2331 -0.0021 12 8 0.6647 -5.4195 -1.2394 13 8 0.6637 -5.4200 1.2346 14 7 2.5204 -6.3928 -0.0025 15 6 3.1197 -6.9812 1.1982 16 6 4.1530 -7.9937 0.6778 17 6 4.0546 -7.8970 -0.8281 18 6 4.7379 -8.5659 -1.8256 19 6 4.4530 -8.3099 -3.1548 20 17 5.3074 -9.1559 -4.4069 21 6 3.4916 -7.3702 -3.4835 22 6 2.8120 -6.6967 -2.4913 23 6 3.0872 -6.9574 -1.1471 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5564 -0.8919 26 1 0.6241 -2.5574 0.8880 27 1 2.8713 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 3.6117 -6.2107 1.7918 30 1 2.3586 -7.4881 1.7913 31 1 5.1541 -7.7214 1.0121 32 1 3.9016 -9.0001 1.0129 33 1 5.4866 -9.3001 -1.5667 34 1 3.2734 -7.1636 -4.5209 35 1 2.0627 -5.9649 -2.7546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285071947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:23 Heat of formation + Delta-G solvation = -75.073946 kcal Electronic energy + Delta-G solvation = -21589.392704 eV Core-core repulsion = 18125.182844 eV Total energy + Delta-G solvation = -3464.209860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.54337 -38.48560 -38.12876 -37.24561 -36.74330 -35.95747 -33.37944 -33.20316 -30.40311 -30.03196 -27.66419 -24.34112 -24.08351 -23.20705 -22.56338 -20.37530 -19.28906 -18.49113 -17.69338 -17.49189 -17.24924 -16.68475 -16.58400 -16.39090 -15.92556 -15.28653 -14.96173 -14.50943 -14.31319 -14.18934 -13.86664 -13.80860 -13.42521 -13.35762 -13.25684 -13.01505 -12.94862 -12.86804 -12.76705 -12.71143 -12.30200 -12.28709 -12.22388 -11.81171 -11.66878 -11.33987 -10.99798 -10.66441 -9.91850 -8.90348 -8.28652 -6.43252 -1.03295 0.14173 0.23649 1.15921 1.40264 1.40871 1.43500 1.51891 2.35937 2.47329 2.70039 2.85525 3.04959 3.16808 3.59087 3.83339 3.92423 3.95773 4.01133 4.19643 4.24813 4.33400 4.60942 4.65163 4.74362 4.84260 4.98153 5.04060 5.12375 5.19199 5.20143 5.21202 5.33845 5.44326 5.64547 5.78859 6.01406 6.69597 7.27238 8.83279 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.003556 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.165723 B = 7872.045820 C = 8627.823289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.022 3.978 10 C -0.578 4.578 11 S 2.611 3.389 12 O -0.976 6.976 13 O -0.976 6.976 14 N -0.940 5.940 15 C 0.094 3.906 16 C -0.070 4.070 17 C -0.121 4.121 18 C -0.062 4.062 19 C -0.067 4.067 20 Cl -0.064 7.064 21 C -0.079 4.079 22 C -0.164 4.164 23 C 0.149 3.851 24 H 0.268 0.732 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.882 -19.121 -1.641 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.094 0.906 9 C -0.017 4.017 10 C -0.711 4.711 11 S 2.712 3.288 12 O -0.967 6.967 13 O -0.966 6.966 14 N -0.763 5.763 15 C -0.029 4.029 16 C -0.108 4.108 17 C -0.126 4.126 18 C -0.081 4.081 19 C -0.095 4.095 20 Cl -0.035 7.035 21 C -0.099 4.099 22 C -0.186 4.186 23 C 0.051 3.949 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.182 0.818 34 H 0.169 0.831 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.736 -19.198 -1.614 23.095 hybrid contribution 0.132 1.440 -0.289 1.474 sum 12.868 -17.758 -1.903 22.013 Atomic orbital electron populations 1.70085 1.08045 1.28509 1.50569 1.26102 0.95854 1.03834 0.94229 0.85367 0.78167 0.77273 0.79493 1.18864 1.20902 1.18645 1.21450 0.93976 0.90626 1.51990 0.90611 1.18835 0.93479 0.92722 0.96675 1.30314 1.12790 1.15463 1.12572 1.05065 0.74286 0.76243 0.73233 1.93500 1.71989 1.85374 1.45793 1.93522 1.71449 1.85552 1.46098 1.56309 1.55546 1.52531 1.11941 1.22395 0.97077 0.98024 0.85398 1.21206 1.00750 1.00773 0.88075 1.20334 0.97156 0.97871 0.97259 1.20468 0.99452 0.99357 0.88809 1.20741 0.99115 0.99554 0.90098 1.98360 1.76208 1.76609 1.52301 1.20886 0.94288 0.94404 1.00282 1.21046 1.03216 1.04197 0.90133 1.18406 0.94482 0.95146 0.86855 0.92286 0.97269 0.97142 0.83473 0.84209 0.87714 0.88977 0.86024 0.86601 0.81826 0.83120 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.54 -29.59 9.11 25.60 0.23 -29.35 16 8 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.02 1.13 4.98 29.85 0.15 1.28 16 10 C -0.58 -21.65 6.12 71.98 0.44 -21.21 16 11 S 2.61 94.13 5.56 -56.49 -0.31 93.81 16 12 O -0.98 -40.43 15.23 -127.65 -1.94 -42.37 16 13 O -0.98 -39.79 17.56 -127.65 -2.24 -42.03 16 14 N -0.94 -25.55 3.40 -337.77 -1.15 -26.69 16 15 C 0.09 1.75 7.08 86.62 0.61 2.37 16 16 C -0.07 -0.90 6.94 30.26 0.21 -0.69 16 17 C -0.12 -2.35 6.23 -19.63 -0.12 -2.47 16 18 C -0.06 -1.06 9.82 22.28 0.22 -0.84 16 19 C -0.07 -1.33 6.32 22.33 0.14 -1.19 16 20 Cl -0.06 -1.11 28.96 -2.72 -0.08 -1.19 16 21 C -0.08 -1.81 9.81 22.21 0.22 -1.60 16 22 C -0.16 -4.57 9.37 22.52 0.21 -4.35 16 23 C 0.15 3.90 6.59 38.32 0.25 4.16 16 24 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.15 4.70 8.14 -2.39 -0.02 4.68 16 28 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.13 4.25 6.09 -2.91 -0.02 4.24 16 Total: -1.00 -73.36 326.10 0.72 -72.64 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.11 Total: 10.45 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 3.03 Total: -53.51 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -0.86 Total: -82.49 kcal Atomic # 8 Polarization: -80.22 SS G_CDS: -4.19 Total: -84.40 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 94.13 SS G_CDS: -0.31 Total: 93.81 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -73.36 0.72 -72.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285071947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.433 kcal (2) G-P(sol) polarization free energy of solvation -73.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds