Wall clock time and date at job start Fri Apr 10 2020 23:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46909 * 270.00412 * 3 2 1 5 5 H 1.48501 * 109.46611 * 30.00215 * 3 2 1 6 6 H 1.48497 * 109.47067 * 150.00054 * 3 2 1 7 7 C 1.37883 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00269 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99679 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47292 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47658 * 179.97438 * 10 9 7 12 12 O 1.42108 * 110.54019 * 68.37505 * 11 10 9 13 13 O 1.42093 * 110.54290 * 291.62482 * 11 10 9 14 14 N 1.65596 * 104.45107 * 179.97438 * 11 10 9 15 15 C 1.46638 * 126.56362 * 90.00107 * 14 11 10 16 16 C 1.50781 * 107.75811 * 179.97438 * 15 14 11 17 17 C 1.38460 * 131.19370 * 180.02562 * 16 15 14 18 18 C 1.38148 * 120.12940 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.97826 * 0.02562 * 18 17 16 20 20 C 1.38617 * 119.98717 * 0.05506 * 19 18 17 21 21 Cl 1.73593 * 120.05949 * 180.02562 * 20 19 18 22 22 C 1.38184 * 108.78616 * 0.06324 * 16 15 14 23 23 C 1.46643 * 126.56741 * 270.00070 * 14 11 10 24 24 H 0.96994 * 120.00401 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47528 * 60.00081 * 9 7 2 26 26 H 1.09003 * 109.47080 * 299.99961 * 9 7 2 27 27 H 1.09006 * 109.47209 * 59.99643 * 10 9 7 28 28 H 1.09001 * 109.46903 * 300.00523 * 10 9 7 29 29 H 1.09002 * 109.81272 * 299.54794 * 15 14 11 30 30 H 1.09004 * 109.81012 * 60.38537 * 15 14 11 31 31 H 1.07996 * 119.93120 * 359.97438 * 17 16 15 32 32 H 1.08003 * 120.01118 * 180.02562 * 18 17 16 33 33 H 1.07994 * 120.02664 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.80723 * 299.54525 * 23 14 11 35 35 H 1.08994 * 109.80853 * 60.38175 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 16 5.8356 -2.6365 -0.0038 12 8 6.3352 -2.1467 1.2332 13 8 6.3332 -2.1455 -1.2408 14 7 6.2488 -4.2400 -0.0042 15 6 6.4659 -5.0859 -1.1822 16 6 6.8230 -6.4679 -0.6966 17 6 7.1224 -7.6288 -1.3892 18 6 7.4229 -8.7887 -0.7015 19 6 7.4244 -8.7914 0.6808 20 6 7.1234 -7.6307 1.3763 21 17 7.1254 -7.6318 3.1122 22 6 6.8230 -6.4678 0.6853 23 6 6.4678 -5.0861 1.1733 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8912 27 1 3.6579 -3.1498 -0.8925 28 1 3.6586 -3.1509 0.8875 29 1 5.5550 -5.1282 -1.7795 30 1 7.2821 -4.6823 -1.7815 31 1 7.1210 -7.6275 -2.4692 32 1 7.6565 -9.6931 -1.2437 33 1 7.6588 -9.6977 1.2192 34 1 7.2857 -4.6833 1.7706 35 1 5.5583 -5.1276 1.7726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287450780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:28 Heat of formation + Delta-G solvation = -45.849208 kcal Electronic energy + Delta-G solvation = -21344.713748 eV Core-core repulsion = 17881.771168 eV Total energy + Delta-G solvation = -3462.942580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59465 -37.14047 -36.85457 -36.42181 -35.68670 -33.99249 -31.62552 -31.52244 -30.93966 -28.05058 -26.05260 -24.77458 -21.90853 -21.89439 -21.21543 -18.90532 -17.83898 -17.09782 -16.68155 -16.41926 -16.17477 -15.38892 -15.37840 -15.10567 -14.48523 -14.32721 -13.73227 -13.46825 -13.39421 -13.10466 -12.99751 -12.83118 -12.08057 -11.95445 -11.89458 -11.83537 -11.74704 -11.71572 -11.54746 -11.29127 -11.26469 -11.11505 -10.48634 -10.23480 -9.92353 -9.57522 -9.34669 -9.01135 -8.68790 -8.64596 -6.18883 -4.20624 0.44621 0.75290 0.81846 1.82050 2.73773 3.17284 3.24858 3.32426 3.36157 3.76386 4.06716 4.11856 4.33608 4.47592 4.55010 4.79436 4.91768 4.99592 5.12199 5.16481 5.26838 5.33912 5.41819 5.44367 5.46690 5.53085 5.73771 5.89838 5.91014 5.95068 6.22477 6.27168 6.35772 6.76652 6.89169 7.51329 8.33728 8.82039 9.40362 10.93435 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.021935 B = 0.003348 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.201561 B = 8361.704576 C = 8599.364542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.579 4.579 11 S 2.608 3.392 12 O -0.954 6.954 13 O -0.955 6.955 14 N -1.016 6.016 15 C 0.164 3.836 16 C -0.085 4.085 17 C -0.093 4.093 18 C -0.104 4.104 19 C -0.109 4.109 20 C -0.015 4.015 21 Cl -0.065 7.065 22 C -0.092 4.092 23 C 0.166 3.834 24 H 0.267 0.733 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.809 -19.150 -0.435 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.713 4.713 11 S 2.708 3.292 12 O -0.944 6.944 13 O -0.945 6.945 14 N -0.851 5.851 15 C 0.039 3.961 16 C -0.087 4.087 17 C -0.112 4.112 18 C -0.122 4.122 19 C -0.127 4.127 20 C -0.042 4.042 21 Cl -0.036 7.036 22 C -0.094 4.094 23 C 0.041 3.959 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.108 0.892 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.284 -18.201 -0.270 24.423 hybrid contribution -0.327 0.385 0.177 0.535 sum 15.956 -17.816 -0.094 23.917 Atomic orbital electron populations 1.69873 1.06216 1.27310 1.49845 1.24983 0.94823 0.99167 0.94085 0.86927 0.80716 0.83684 0.79154 1.19629 1.20706 1.18597 1.20827 0.87692 0.94955 1.52456 0.90379 1.19432 1.00006 0.87272 0.97957 1.30329 1.20526 1.09297 1.11140 1.05390 0.79190 0.70432 0.74223 1.93562 1.79004 1.76604 1.45252 1.93553 1.79108 1.76580 1.45284 1.58730 1.86130 1.28279 1.11980 1.19999 1.02219 0.85983 0.87920 1.20448 0.99450 0.95421 0.93341 1.20627 0.98979 0.91000 1.00566 1.21036 0.99597 0.98303 0.93301 1.21070 1.00573 0.96672 0.94431 1.20430 1.04863 0.94114 0.84759 1.98389 1.96925 1.98808 1.09510 1.20213 1.00424 0.94351 0.94417 1.19950 1.02346 0.85766 0.87880 0.92328 0.94825 0.95289 0.85484 0.85443 0.89565 0.89184 0.84835 0.84495 0.84465 0.89158 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 10 C -0.58 -10.42 6.11 37.16 0.23 -10.19 16 11 S 2.61 44.03 5.68 -107.50 -0.61 43.42 16 12 O -0.95 -18.50 17.65 -57.54 -1.02 -19.52 16 13 O -0.95 -18.16 17.65 -57.54 -1.02 -19.17 16 14 N -1.02 -13.62 3.64 -116.65 -0.42 -14.05 16 15 C 0.16 1.81 6.94 -5.08 -0.04 1.78 16 16 C -0.09 -0.86 6.22 -104.52 -0.65 -1.51 16 17 C -0.09 -0.72 10.04 -39.53 -0.40 -1.12 16 18 C -0.10 -0.71 10.04 -39.61 -0.40 -1.10 16 19 C -0.11 -0.85 9.85 -39.44 -0.39 -1.24 16 20 C -0.01 -0.14 6.34 -39.32 -0.25 -0.39 16 21 Cl -0.07 -0.64 28.77 -51.86 -1.49 -2.13 16 22 C -0.09 -1.01 6.11 -104.48 -0.64 -1.65 16 23 C 0.17 2.03 6.70 -5.08 -0.03 2.00 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 26 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 27 H 0.13 2.06 8.14 -51.92 -0.42 1.63 16 28 H 0.13 2.10 8.14 -51.92 -0.42 1.67 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 327.19 15.07 4.93 4.93 Total: -1.00 -34.02 327.19 -10.79 -44.80 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.16 Total: -2.33 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.11 Total: -26.47 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.35 Total: -40.15 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -2.03 Total: -38.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 44.03 SS G_CDS: -0.61 Total: 43.42 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.49 Total: -2.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.02 -10.79 -44.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287450780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.045 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds