Wall clock time and date at job start Fri Apr 10 2020 23:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46909 * 270.00412 * 3 2 1 5 5 H 1.48501 * 109.46611 * 30.00215 * 3 2 1 6 6 H 1.48497 * 109.47067 * 150.00054 * 3 2 1 7 7 C 1.37883 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00269 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99679 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47292 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47658 * 179.97438 * 10 9 7 12 12 O 1.42108 * 110.54019 * 68.37505 * 11 10 9 13 13 O 1.42093 * 110.54290 * 291.62482 * 11 10 9 14 14 N 1.65596 * 104.45107 * 179.97438 * 11 10 9 15 15 C 1.46638 * 126.56362 * 90.00107 * 14 11 10 16 16 C 1.50781 * 107.75811 * 179.97438 * 15 14 11 17 17 C 1.38460 * 131.19370 * 180.02562 * 16 15 14 18 18 C 1.38148 * 120.12940 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.97826 * 0.02562 * 18 17 16 20 20 C 1.38617 * 119.98717 * 0.05506 * 19 18 17 21 21 Cl 1.73593 * 120.05949 * 180.02562 * 20 19 18 22 22 C 1.38184 * 108.78616 * 0.06324 * 16 15 14 23 23 C 1.46643 * 126.56741 * 270.00070 * 14 11 10 24 24 H 0.96994 * 120.00401 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47528 * 60.00081 * 9 7 2 26 26 H 1.09003 * 109.47080 * 299.99961 * 9 7 2 27 27 H 1.09006 * 109.47209 * 59.99643 * 10 9 7 28 28 H 1.09001 * 109.46903 * 300.00523 * 10 9 7 29 29 H 1.09002 * 109.81272 * 299.54794 * 15 14 11 30 30 H 1.09004 * 109.81012 * 60.38537 * 15 14 11 31 31 H 1.07996 * 119.93120 * 359.97438 * 17 16 15 32 32 H 1.08003 * 120.01118 * 180.02562 * 18 17 16 33 33 H 1.07994 * 120.02664 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.80723 * 299.54525 * 23 14 11 35 35 H 1.08994 * 109.80853 * 60.38175 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 16 5.8356 -2.6365 -0.0038 12 8 6.3352 -2.1467 1.2332 13 8 6.3332 -2.1455 -1.2408 14 7 6.2488 -4.2400 -0.0042 15 6 6.4659 -5.0859 -1.1822 16 6 6.8230 -6.4679 -0.6966 17 6 7.1224 -7.6288 -1.3892 18 6 7.4229 -8.7887 -0.7015 19 6 7.4244 -8.7914 0.6808 20 6 7.1234 -7.6307 1.3763 21 17 7.1254 -7.6318 3.1122 22 6 6.8230 -6.4678 0.6853 23 6 6.4678 -5.0861 1.1733 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8912 27 1 3.6579 -3.1498 -0.8925 28 1 3.6586 -3.1509 0.8875 29 1 5.5550 -5.1282 -1.7795 30 1 7.2821 -4.6823 -1.7815 31 1 7.1210 -7.6275 -2.4692 32 1 7.6565 -9.6931 -1.2437 33 1 7.6588 -9.6977 1.2192 34 1 7.2857 -4.6833 1.7706 35 1 5.5583 -5.1276 1.7726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287450780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:28 Heat of formation + Delta-G solvation = -68.722475 kcal Electronic energy + Delta-G solvation = -21345.705607 eV Core-core repulsion = 17881.771168 eV Total energy + Delta-G solvation = -3463.934439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33094 -38.31479 -37.92118 -37.20782 -37.10439 -35.91791 -33.49978 -32.31891 -31.74605 -28.84118 -27.93162 -25.66622 -23.12243 -22.59516 -22.58026 -20.18075 -19.42539 -18.61946 -17.51725 -17.45462 -17.37338 -16.48530 -16.41916 -16.25844 -16.08641 -15.45853 -15.10673 -14.83039 -14.24104 -14.15063 -13.95660 -13.82622 -13.80577 -13.33685 -13.26612 -13.15082 -13.09209 -13.00702 -12.69806 -12.42536 -12.25599 -12.18947 -11.97742 -11.82923 -11.73798 -11.39261 -10.84960 -10.50977 -9.66615 -9.48400 -8.37092 -6.43346 -0.92633 0.11339 0.16795 1.12291 1.32415 1.34353 1.44320 1.51007 2.29343 2.54888 2.69451 2.80469 2.96905 3.30232 3.40122 3.82275 3.98251 4.01442 4.13834 4.22219 4.36642 4.38345 4.47905 4.51887 4.54959 4.67157 4.82668 4.94461 4.96860 5.07690 5.08282 5.19507 5.35990 5.45931 5.47315 5.78582 6.15594 6.62772 7.21121 8.78470 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.021935 B = 0.003348 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.201561 B = 8361.704576 C = 8599.364542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.925 3.075 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.528 4.528 8 H 0.049 0.951 9 C -0.017 4.017 10 C -0.585 4.585 11 S 2.643 3.357 12 O -0.980 6.980 13 O -0.974 6.974 14 N -1.014 6.014 15 C 0.154 3.846 16 C -0.096 4.096 17 C -0.090 4.090 18 C -0.094 4.094 19 C -0.108 4.108 20 C -0.028 4.028 21 Cl -0.074 7.074 22 C -0.113 4.113 23 C 0.159 3.841 24 H 0.270 0.730 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.642 -20.656 -1.432 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.748 3.252 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.057 4.057 10 C -0.717 4.717 11 S 2.741 3.259 12 O -0.970 6.970 13 O -0.965 6.965 14 N -0.851 5.851 15 C 0.029 3.971 16 C -0.098 4.098 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.055 4.055 21 Cl -0.045 7.045 22 C -0.115 4.115 23 C 0.034 3.966 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.161 0.839 28 H 0.156 0.844 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.178 0.822 32 H 0.190 0.810 33 H 0.175 0.825 34 H 0.102 0.898 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.112 -19.710 -1.270 26.798 hybrid contribution -0.887 0.659 0.463 1.198 sum 17.225 -19.051 -0.807 25.696 Atomic orbital electron populations 1.70003 1.07932 1.28445 1.51565 1.25880 0.95636 1.03058 0.93908 0.86020 0.79931 0.79294 0.79982 1.18336 1.19978 1.17214 1.21149 0.90172 0.93881 1.51517 0.93317 1.19394 0.97271 0.90877 0.98123 1.30314 1.22393 1.06326 1.12635 1.04076 0.77952 0.70793 0.73034 1.93524 1.79105 1.77975 1.46431 1.93522 1.79087 1.77775 1.46070 1.58289 1.85405 1.27723 1.13663 1.20260 1.03315 0.86391 0.87102 1.20488 1.00622 0.95652 0.93021 1.20996 0.97608 0.90233 1.01997 1.21478 0.97666 0.99173 0.92903 1.21419 0.99522 0.96561 0.95189 1.20620 1.05784 0.94612 0.84494 1.98383 1.97020 1.98837 1.10263 1.20142 1.02319 0.93930 0.95124 1.20053 1.02438 0.86708 0.87418 0.92082 0.94811 0.94667 0.83881 0.84360 0.88022 0.88708 0.82206 0.81017 0.82453 0.89823 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 2 C 0.01 0.80 5.47 84.66 0.46 1.26 16 3 Si 0.93 43.49 27.47 68.60 1.88 45.37 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 7 C -0.53 -29.69 9.66 25.60 0.25 -29.44 16 8 H 0.05 2.93 7.99 -2.92 -0.02 2.91 16 9 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 10 C -0.58 -20.73 6.11 71.98 0.44 -20.29 16 11 S 2.64 87.21 5.68 -56.49 -0.32 86.89 16 12 O -0.98 -37.62 17.65 -127.65 -2.25 -39.87 16 13 O -0.97 -35.96 17.65 -127.65 -2.25 -38.22 16 14 N -1.01 -26.28 3.64 -522.96 -1.90 -28.19 16 15 C 0.15 3.14 6.94 85.63 0.59 3.74 16 16 C -0.10 -1.74 6.22 -19.80 -0.12 -1.87 16 17 C -0.09 -1.08 10.04 22.30 0.22 -0.86 16 18 C -0.09 -0.90 10.04 22.25 0.22 -0.68 16 19 C -0.11 -1.38 9.85 22.36 0.22 -1.16 16 20 C -0.03 -0.51 6.34 22.44 0.14 -0.37 16 21 Cl -0.07 -1.40 28.77 -2.72 -0.08 -1.48 16 22 C -0.11 -2.36 6.11 -19.77 -0.12 -2.48 16 23 C 0.16 3.83 6.70 85.63 0.57 4.40 16 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.03 1.55 7.20 -2.39 -0.02 1.53 16 26 H 0.04 1.58 7.57 -2.39 -0.02 1.56 16 27 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 28 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 33 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.84 327.19 -0.57 -74.41 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.05 Total: 6.86 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 3.00 Total: -48.44 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -1.60 Total: -85.53 kcal Atomic # 8 Polarization: -73.58 SS G_CDS: -4.51 Total: -78.09 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Atomic # 16 Polarization: 87.21 SS G_CDS: -0.32 Total: 86.89 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -73.84 -0.57 -74.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287450780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.691 kcal (2) G-P(sol) polarization free energy of solvation -73.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds