Wall clock time and date at job start Fri Apr 10 2020 23:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 116.99729 * 2 1 4 4 C 1.38733 * 119.98204 * 359.97438 * 3 2 1 5 5 C 1.38161 * 120.00219 * 179.76389 * 4 3 2 6 6 Cl 1.73602 * 120.02014 * 180.28072 * 5 4 3 7 7 C 1.38975 * 119.96197 * 0.49323 * 5 4 3 8 8 N 1.40165 * 120.01512 * 179.79136 * 7 5 4 9 9 C 1.34781 * 119.99879 * 145.03630 * 8 7 5 10 10 O 1.21291 * 119.99548 * 4.48000 * 9 8 7 11 11 C 1.50698 * 119.99731 * 184.47346 * 9 8 7 12 12 S 1.81001 * 109.46789 * 180.02562 * 11 9 8 13 13 C 1.76195 * 100.00183 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99833 * 0.02562 * 13 12 11 15 15 C 1.38801 * 120.00301 * 179.97438 * 13 12 11 16 16 N 1.31632 * 119.99838 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99906 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47334 * 89.99721 * 17 15 13 19 19 H 1.48502 * 109.47021 * 209.99765 * 17 15 13 20 20 H 1.48497 * 109.47175 * 329.99741 * 17 15 13 21 21 C 1.38782 * 119.96228 * 359.50950 * 7 5 4 22 22 C 1.38136 * 119.99506 * 0.25490 * 21 7 5 23 23 C 1.50699 * 119.97912 * 180.02562 * 22 21 7 24 24 H 1.08994 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47239 * 300.00194 * 1 2 3 26 26 H 1.09004 * 109.47186 * 59.99909 * 1 2 3 27 27 H 1.08006 * 120.00112 * 0.02562 * 4 3 2 28 28 H 0.97000 * 120.00424 * 325.30311 * 8 7 5 29 29 H 1.08993 * 109.47686 * 299.99733 * 11 9 8 30 30 H 1.08999 * 109.47249 * 60.00776 * 11 9 8 31 31 H 0.97003 * 119.99690 * 180.02562 * 16 15 13 32 32 H 1.08002 * 120.00001 * 180.23962 * 21 7 5 33 33 H 1.08998 * 109.47393 * 89.99766 * 23 22 21 34 34 H 1.08998 * 109.46777 * 210.00114 * 23 22 21 35 35 H 1.08997 * 109.47107 * 329.99631 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2902 2.3748 -0.0005 5 6 1.9170 3.6061 0.0044 6 17 0.9714 5.0619 0.0111 7 6 3.3048 3.6785 -0.0005 8 7 3.9418 4.9270 0.0001 9 6 5.1026 5.0911 0.6652 10 8 5.6376 4.1400 1.1948 11 6 5.7356 6.4560 0.7506 12 16 7.2726 6.3497 1.7006 13 6 7.7843 8.0348 1.6442 14 1 7.1823 8.7648 1.1235 15 6 8.9605 8.4243 2.2699 16 7 9.3424 9.6833 2.2282 17 14 10.0013 7.1618 3.1712 18 1 10.9884 6.5723 2.2314 19 1 10.7178 7.8207 4.2926 20 1 9.1250 6.0888 3.7060 21 6 4.0597 2.5139 0.0000 22 6 3.4313 1.2837 0.0000 23 6 4.2513 0.0193 0.0011 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.2117 2.3179 -0.0005 28 1 3.5453 5.6741 -0.4749 29 1 5.9541 6.8187 -0.2537 30 1 5.0498 7.1443 1.2444 31 1 10.1646 9.9554 2.6651 32 1 5.1382 2.5694 0.0001 33 1 4.4483 -0.2851 1.0290 34 1 3.7027 -0.7699 -0.5128 35 1 5.1961 0.1985 -0.5121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288775246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:38 Heat of formation + Delta-G solvation = -57.160774 kcal Electronic energy + Delta-G solvation = -20795.930687 eV Core-core repulsion = 17332.497600 eV Total energy + Delta-G solvation = -3463.433086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86976 -39.64321 -37.69691 -36.60507 -34.65079 -32.57822 -32.47087 -30.53755 -28.58387 -27.71542 -26.70429 -25.64724 -22.96850 -21.85566 -20.49451 -18.42130 -18.14098 -17.25288 -16.99994 -16.33666 -16.06020 -15.39229 -15.02636 -14.75405 -14.44120 -14.14354 -13.91742 -13.68618 -13.59278 -13.27711 -13.08740 -12.82876 -12.45945 -12.35462 -11.98149 -11.90969 -11.44721 -11.31142 -11.25430 -11.13573 -11.03732 -10.68360 -9.99500 -9.89774 -9.66150 -9.03743 -8.91039 -8.57117 -7.89959 -6.97367 -6.32111 -4.04926 0.85998 1.06722 1.83071 2.60063 2.71934 2.96707 3.18094 3.30616 3.42062 3.47450 3.55604 4.29602 4.45321 4.56491 4.60204 4.75224 4.81419 4.88638 5.06851 5.07066 5.12855 5.22774 5.33131 5.48653 5.58308 5.65146 5.66555 5.80480 5.91621 5.97237 6.08760 6.33188 6.63100 7.04146 7.31768 7.90810 8.21374 8.38662 9.13606 10.77052 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.003135 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.981092 B = 8928.792826 C = 9979.264587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.117 3.883 4 C -0.179 4.179 5 C -0.035 4.035 6 Cl -0.062 7.062 7 C 0.138 3.862 8 N -0.674 5.674 9 C 0.533 3.467 10 O -0.498 6.498 11 C -0.125 4.125 12 S -0.137 6.137 13 C -0.523 4.523 14 H 0.089 0.911 15 C 0.096 3.904 16 N -0.879 5.879 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C -0.075 4.075 22 C -0.090 4.090 23 C -0.105 4.105 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.140 0.860 28 H 0.412 0.588 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.271 0.729 32 H 0.160 0.840 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.278 -17.070 -7.182 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.071 3.929 4 C -0.199 4.199 5 C -0.064 4.064 6 Cl -0.034 7.034 7 C 0.042 3.958 8 N -0.322 5.322 9 C 0.321 3.679 10 O -0.371 6.371 11 C -0.275 4.275 12 S 0.090 5.910 13 C -0.670 4.670 14 H 0.107 0.893 15 C -0.113 4.113 16 N -0.515 5.515 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.095 4.095 22 C -0.091 4.091 23 C -0.161 4.161 24 H 0.119 0.881 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.249 0.751 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.177 0.823 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.205 -18.497 -6.223 26.689 hybrid contribution -0.739 1.695 -0.415 1.895 sum -18.944 -16.802 -6.637 26.177 Atomic orbital electron populations 1.23083 0.78472 1.04024 1.01447 1.86100 1.21205 1.26096 1.88904 1.18579 0.91520 0.83848 0.98954 1.20807 1.00413 0.89985 1.08722 1.20422 0.89794 0.88008 1.08216 1.98369 1.71996 1.36017 1.96982 1.17391 0.88914 0.86593 1.02916 1.43611 1.24476 1.10808 1.53266 1.20513 0.79437 0.91313 0.76635 1.90690 1.60849 1.41521 1.44062 1.23283 1.02810 0.95369 1.06033 1.84787 1.21841 1.15550 1.68869 1.22297 1.12059 0.91500 1.41153 0.89277 1.24713 0.96426 0.95283 0.94875 1.69938 1.23504 1.15510 1.42577 0.86738 0.81993 0.82599 0.80539 1.19163 1.19897 1.15905 1.21134 1.01655 0.88725 0.98031 1.19288 0.90404 0.96220 1.03220 1.20633 0.98905 0.93778 1.02830 0.88137 0.92559 0.92617 0.84188 0.75112 0.87987 0.87930 0.91883 0.82295 0.90852 0.91007 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.00 9.53 -19.66 -0.19 -3.19 16 3 C 0.12 1.30 6.66 -39.23 -0.26 1.04 16 4 C -0.18 -1.88 8.81 -39.43 -0.35 -2.23 16 5 C -0.03 -0.41 6.33 -39.34 -0.25 -0.66 16 6 Cl -0.06 -0.66 27.95 -51.86 -1.45 -2.11 16 7 C 0.14 1.86 6.31 -83.57 -0.53 1.33 16 8 N -0.67 -9.18 5.06 -9.80 -0.05 -9.22 16 9 C 0.53 9.18 7.69 -10.98 -0.08 9.09 16 10 O -0.50 -10.03 13.28 5.55 0.07 -9.96 16 11 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 12 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 13 C -0.52 -14.78 10.04 30.94 0.31 -14.47 16 14 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 15 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 16 N -0.88 -26.26 13.97 55.49 0.78 -25.49 16 17 Si 0.86 21.46 27.74 -169.99 -4.72 16.74 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 21 C -0.08 -1.03 8.35 -39.42 -0.33 -1.36 16 22 C -0.09 -1.08 5.89 -104.49 -0.62 -1.70 16 23 C -0.10 -1.05 9.79 36.01 0.35 -0.70 16 24 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 26 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 27 H 0.14 1.13 6.29 -52.48 -0.33 0.80 16 28 H 0.41 4.59 8.07 -40.82 -0.33 4.26 16 29 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 30 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 31 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.16 2.39 6.20 -52.49 -0.33 2.07 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.65 7.52 -51.93 -0.39 0.26 16 35 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -32.65 328.75 -7.08 -39.73 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.86 Total: 1.83 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.63 Total: -7.93 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.73 Total: -34.71 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.11 Total: -13.15 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.72 Total: 16.74 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.45 Total: -2.11 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.65 -7.08 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288775246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.428 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds