Wall clock time and date at job start Fri Apr 10 2020 23:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 116.99729 * 2 1 4 4 C 1.38733 * 119.98204 * 359.97438 * 3 2 1 5 5 C 1.38161 * 120.00219 * 179.76389 * 4 3 2 6 6 Cl 1.73602 * 120.02014 * 180.28072 * 5 4 3 7 7 C 1.38975 * 119.96197 * 0.49323 * 5 4 3 8 8 N 1.40165 * 120.01512 * 179.79136 * 7 5 4 9 9 C 1.34781 * 119.99879 * 145.03630 * 8 7 5 10 10 O 1.21291 * 119.99548 * 4.48000 * 9 8 7 11 11 C 1.50698 * 119.99731 * 184.47346 * 9 8 7 12 12 S 1.81001 * 109.46789 * 180.02562 * 11 9 8 13 13 C 1.76195 * 100.00183 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99833 * 0.02562 * 13 12 11 15 15 C 1.38801 * 120.00301 * 179.97438 * 13 12 11 16 16 N 1.31632 * 119.99838 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99906 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47334 * 89.99721 * 17 15 13 19 19 H 1.48502 * 109.47021 * 209.99765 * 17 15 13 20 20 H 1.48497 * 109.47175 * 329.99741 * 17 15 13 21 21 C 1.38782 * 119.96228 * 359.50950 * 7 5 4 22 22 C 1.38136 * 119.99506 * 0.25490 * 21 7 5 23 23 C 1.50699 * 119.97912 * 180.02562 * 22 21 7 24 24 H 1.08994 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47239 * 300.00194 * 1 2 3 26 26 H 1.09004 * 109.47186 * 59.99909 * 1 2 3 27 27 H 1.08006 * 120.00112 * 0.02562 * 4 3 2 28 28 H 0.97000 * 120.00424 * 325.30311 * 8 7 5 29 29 H 1.08993 * 109.47686 * 299.99733 * 11 9 8 30 30 H 1.08999 * 109.47249 * 60.00776 * 11 9 8 31 31 H 0.97003 * 119.99690 * 180.02562 * 16 15 13 32 32 H 1.08002 * 120.00001 * 180.23962 * 21 7 5 33 33 H 1.08998 * 109.47393 * 89.99766 * 23 22 21 34 34 H 1.08998 * 109.46777 * 210.00114 * 23 22 21 35 35 H 1.08997 * 109.47107 * 329.99631 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2902 2.3748 -0.0005 5 6 1.9170 3.6061 0.0044 6 17 0.9714 5.0619 0.0111 7 6 3.3048 3.6785 -0.0005 8 7 3.9418 4.9270 0.0001 9 6 5.1026 5.0911 0.6652 10 8 5.6376 4.1400 1.1948 11 6 5.7356 6.4560 0.7506 12 16 7.2726 6.3497 1.7006 13 6 7.7843 8.0348 1.6442 14 1 7.1823 8.7648 1.1235 15 6 8.9605 8.4243 2.2699 16 7 9.3424 9.6833 2.2282 17 14 10.0013 7.1618 3.1712 18 1 10.9884 6.5723 2.2314 19 1 10.7178 7.8207 4.2926 20 1 9.1250 6.0888 3.7060 21 6 4.0597 2.5139 0.0000 22 6 3.4313 1.2837 0.0000 23 6 4.2513 0.0193 0.0011 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.2117 2.3179 -0.0005 28 1 3.5453 5.6741 -0.4749 29 1 5.9541 6.8187 -0.2537 30 1 5.0498 7.1443 1.2444 31 1 10.1646 9.9554 2.6651 32 1 5.1382 2.5694 0.0001 33 1 4.4483 -0.2851 1.0290 34 1 3.7027 -0.7699 -0.5128 35 1 5.1961 0.1985 -0.5121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288775246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:36 Heat of formation + Delta-G solvation = -77.956644 kcal Electronic energy + Delta-G solvation = -20796.832463 eV Core-core repulsion = 17332.497600 eV Total energy + Delta-G solvation = -3464.334863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.87582 -40.69757 -38.64771 -37.48534 -35.79199 -34.67231 -33.47094 -31.79723 -29.63730 -28.40525 -27.86675 -27.53091 -23.93341 -22.81058 -21.71007 -19.98537 -19.19058 -18.49929 -18.22101 -17.40211 -17.10348 -16.75780 -16.59223 -16.00743 -15.67333 -15.31081 -15.03496 -14.85770 -14.71220 -14.57860 -14.24887 -13.97409 -13.70876 -13.34911 -13.12884 -13.01927 -12.75347 -12.69866 -12.56959 -12.30285 -12.10240 -12.00064 -11.87125 -11.17232 -11.12581 -10.90645 -10.56233 -9.83608 -9.01921 -8.82960 -8.51530 -6.22668 -0.06249 0.11740 0.89606 0.96687 1.31954 1.39015 1.45939 1.53101 2.00728 2.24761 2.31973 2.47699 2.67359 2.86857 3.56389 3.63599 3.77633 4.02459 4.17140 4.20881 4.35467 4.42648 4.43200 4.47836 4.62802 4.73773 4.79954 4.83184 4.90068 5.01258 5.24819 5.38383 5.63514 5.70751 6.12083 6.18174 6.30104 6.92987 6.94413 8.60835 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.003135 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.981092 B = 8928.792826 C = 9979.264587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.174 4.174 5 C -0.034 4.034 6 Cl -0.051 7.051 7 C 0.113 3.887 8 N -0.656 5.656 9 C 0.540 3.460 10 O -0.532 6.532 11 C -0.112 4.112 12 S -0.165 6.165 13 C -0.529 4.529 14 H 0.063 0.937 15 C 0.045 3.955 16 N -0.917 5.917 17 Si 0.914 3.086 18 H -0.261 1.261 19 H -0.261 1.261 20 H -0.235 1.235 21 C -0.088 4.088 22 C -0.101 4.101 23 C -0.103 4.103 24 H 0.122 0.878 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.167 0.833 28 H 0.424 0.576 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.277 0.723 32 H 0.140 0.860 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.278 -18.764 -7.430 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.076 3.924 4 C -0.194 4.194 5 C -0.063 4.063 6 Cl -0.022 7.022 7 C 0.018 3.982 8 N -0.303 5.303 9 C 0.327 3.673 10 O -0.408 6.408 11 C -0.262 4.262 12 S 0.062 5.938 13 C -0.677 4.677 14 H 0.082 0.918 15 C -0.160 4.160 16 N -0.555 5.555 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.185 1.185 20 H -0.159 1.159 21 C -0.109 4.109 22 C -0.103 4.103 23 C -0.159 4.159 24 H 0.141 0.859 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.185 0.815 28 H 0.263 0.737 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.254 -20.189 -6.497 29.326 hybrid contribution -0.361 2.151 -0.441 2.225 sum -20.614 -18.039 -6.938 28.257 Atomic orbital electron populations 1.23429 0.76278 1.05952 1.02422 1.86103 1.23437 1.25234 1.88431 1.18643 0.91321 0.84711 0.97679 1.21088 1.01735 0.89136 1.07409 1.20475 0.89220 0.89006 1.07587 1.98375 1.71494 1.35435 1.96904 1.17489 0.89707 0.86025 1.04989 1.43270 1.23209 1.11637 1.52230 1.20134 0.80240 0.90076 0.76833 1.90689 1.62058 1.42146 1.45881 1.23247 0.99937 0.97042 1.06023 1.84672 1.25746 1.12746 1.70674 1.22459 1.11840 0.93049 1.40360 0.91847 1.25570 0.97699 0.97039 0.95741 1.70019 1.24405 1.17228 1.43836 0.85869 0.80431 0.80309 0.79788 1.18593 1.18499 1.15907 1.21022 1.00895 0.89751 0.99205 1.19478 0.91402 0.96213 1.03193 1.20651 0.98955 0.93307 1.03024 0.85935 0.91753 0.91363 0.81526 0.73683 0.86157 0.86456 0.91368 0.84255 0.90807 0.89923 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -5.34 9.53 -93.24 -0.89 -6.22 16 3 C 0.12 2.48 6.66 22.50 0.15 2.63 16 4 C -0.17 -3.20 8.81 22.37 0.20 -3.00 16 5 C -0.03 -0.73 6.33 22.43 0.14 -0.59 16 6 Cl -0.05 -0.97 27.95 -2.72 -0.08 -1.04 16 7 C 0.11 2.94 6.31 38.11 0.24 3.18 16 8 N -0.66 -17.18 5.06 -303.30 -1.53 -18.71 16 9 C 0.54 18.28 7.69 87.66 0.67 18.95 16 10 O -0.53 -21.52 13.28 -3.06 -0.04 -21.56 16 11 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 12 S -0.16 -8.10 18.55 -56.49 -1.05 -9.15 16 13 C -0.53 -30.35 10.04 67.95 0.68 -29.67 16 14 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 15 C 0.04 2.61 5.50 84.86 0.47 3.08 16 16 N -0.92 -55.51 13.97 21.65 0.30 -55.21 16 17 Si 0.91 44.44 27.74 68.60 1.90 46.35 16 18 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.24 -11.36 6.74 99.48 0.67 -10.69 16 21 C -0.09 -2.41 8.35 22.38 0.19 -2.22 16 22 C -0.10 -2.35 5.89 -19.78 -0.12 -2.47 16 23 C -0.10 -1.98 9.79 71.24 0.70 -1.28 16 24 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 26 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 27 H 0.17 2.09 6.29 -2.91 -0.02 2.07 16 28 H 0.42 8.78 8.07 -92.71 -0.75 8.03 16 29 H 0.12 3.96 8.14 -2.40 -0.02 3.95 16 30 H 0.12 3.96 8.14 -2.40 -0.02 3.94 16 31 H 0.28 15.51 8.31 -92.71 -0.77 14.73 16 32 H 0.14 4.33 6.20 -2.91 -0.02 4.32 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.38 7.52 -2.39 -0.02 1.36 16 35 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 Total: -1.00 -70.59 328.75 3.84 -66.74 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.35 Total: 12.62 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.87 Total: -13.80 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.23 Total: -73.92 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.93 Total: -27.79 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.35 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.05 Total: -9.15 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.04 kcal Total: -70.59 3.84 -66.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288775246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.213 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds