Wall clock time and date at job start Fri Apr 10 2020 23:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.65408 * 359.69019 * 13 11 10 15 15 C 1.55129 * 104.72783 * 155.81707 * 14 13 11 16 16 C 1.55161 * 101.48250 * 37.29418 * 15 14 13 17 17 H 1.08999 * 110.71480 * 82.69527 * 16 15 14 18 18 N 1.46496 * 110.72083 * 205.96966 * 16 15 14 19 19 C 1.35047 * 126.03822 * 79.98118 * 18 16 15 20 20 C 1.35368 * 107.72962 * 179.97438 * 19 18 16 21 21 Cl 1.73600 * 126.04623 * 179.97438 * 20 19 18 22 22 C 1.39928 * 107.90764 * 359.97438 * 20 19 18 23 23 N 1.30851 * 108.21519 * 359.76244 * 22 20 19 24 24 C 1.47018 * 125.64456 * 180.02562 * 13 11 10 25 25 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 27 27 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 28 28 H 1.09002 * 110.36673 * 274.75130 * 14 13 11 29 29 H 1.09008 * 110.36715 * 37.06969 * 14 13 11 30 30 H 1.09005 * 111.19363 * 279.19700 * 15 14 13 31 31 H 1.08992 * 110.94134 * 155.28757 * 15 14 13 32 32 H 1.07998 * 126.13190 * 359.94025 * 19 18 16 33 33 H 1.08006 * 125.89148 * 180.02562 * 22 20 19 34 34 H 1.09001 * 109.88070 * 300.43813 * 24 13 11 35 35 H 1.08996 * 109.88909 * 61.60396 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3150 -6.2449 -0.0051 15 6 4.8018 -7.5823 0.6122 16 6 3.7728 -8.5853 0.0269 17 1 4.0591 -8.8877 -0.9804 18 7 3.6329 -9.7532 0.9002 19 6 2.8960 -9.8166 2.0301 20 6 3.0302 -11.0632 2.5404 21 17 2.2835 -11.6597 3.9896 22 6 3.8773 -11.7860 1.6930 23 7 4.2345 -11.0034 0.7071 24 6 2.4665 -7.7640 -0.0008 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7314 -0.8895 27 1 3.1245 -3.7314 0.8906 28 1 4.6844 -6.1385 -1.0251 29 1 4.6414 -5.4041 0.6070 30 1 4.7471 -7.5570 1.7006 31 1 5.8121 -7.8201 0.2793 32 1 2.3061 -9.0160 2.4514 33 1 4.1803 -12.8140 1.8272 34 1 1.8685 -7.9893 0.8823 35 1 1.9012 -7.9968 -0.9031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290965157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:44 Heat of formation + Delta-G solvation = 25.586096 kcal Electronic energy + Delta-G solvation = -20687.596921 eV Core-core repulsion = 17260.044759 eV Total energy + Delta-G solvation = -3427.552162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.055 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52354 -40.99689 -38.63477 -37.37037 -34.58975 -34.42379 -31.78764 -31.17581 -30.76279 -28.89762 -27.64968 -24.96824 -23.52162 -22.34427 -21.34484 -20.72496 -19.67491 -18.80664 -18.01271 -17.31095 -16.88228 -16.61677 -16.18726 -15.98737 -15.71811 -15.44290 -15.17024 -14.79780 -14.49603 -14.24636 -14.04541 -13.72752 -13.35896 -13.28803 -13.14764 -12.93526 -12.89157 -12.62160 -12.52611 -12.43630 -12.06471 -11.73799 -11.55410 -11.14351 -11.07565 -10.63297 -10.28334 -9.85102 -9.49717 -8.68334 -8.34973 -6.13460 0.60438 0.79994 1.22334 1.42908 1.43213 1.49362 1.52979 1.54796 1.68492 2.06960 2.26901 2.98858 2.99639 3.22797 3.33259 3.61024 3.73922 3.76502 3.87390 3.94214 4.13395 4.24424 4.37998 4.43329 4.47499 4.56739 4.60353 4.67174 4.81299 4.97525 5.14707 5.31422 5.42071 5.72709 6.19348 6.22307 6.43799 7.01916 7.06642 8.74214 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.002442 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.999481 B =11463.072928 C =11883.371329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.256 1.256 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.153 6.153 10 C -0.120 4.120 11 C 0.550 3.450 12 O -0.562 6.562 13 N -0.615 5.615 14 C 0.094 3.906 15 C -0.128 4.128 16 C 0.159 3.841 17 H 0.142 0.858 18 N -0.357 5.357 19 C 0.071 3.929 20 C -0.198 4.198 21 Cl -0.042 7.042 22 C 0.067 3.933 23 N -0.298 5.298 24 C 0.098 3.902 25 H 0.271 0.729 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.189 0.811 33 H 0.217 0.783 34 H 0.071 0.929 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.519 -21.915 2.957 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.180 1.180 6 H -0.205 1.205 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.074 5.926 10 C -0.271 4.271 11 C 0.339 3.661 12 O -0.440 6.440 13 N -0.351 5.351 14 C -0.028 4.028 15 C -0.167 4.167 16 C 0.057 3.943 17 H 0.160 0.840 18 N -0.139 5.139 19 C -0.076 4.076 20 C -0.236 4.236 21 Cl -0.014 7.014 22 C -0.120 4.120 23 N -0.118 5.118 24 C -0.026 4.026 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.141 0.859 32 H 0.206 0.794 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.192 -21.893 1.893 25.631 hybrid contribution 0.539 1.096 0.980 1.566 sum 13.731 -20.797 2.874 25.087 Atomic orbital electron populations 1.70186 1.08014 1.28616 1.48037 1.26136 0.95947 1.03357 0.93762 0.84951 0.78248 0.76004 0.78777 1.19352 1.18014 1.20485 1.23185 0.95372 0.91766 1.58802 0.89687 1.85643 1.10516 0.99374 1.97058 1.23305 1.03492 0.93425 1.06835 1.19806 0.85301 0.85862 0.75131 1.90714 1.17131 1.85653 1.50534 1.48262 1.08302 1.04504 1.74045 1.22755 0.77247 0.99236 1.03551 1.23297 1.00055 0.91608 1.01705 1.22369 0.95247 0.81388 0.95270 0.84009 1.48469 1.36545 1.10060 1.18807 1.22451 0.97209 0.98759 0.89222 1.20897 1.10221 0.95478 0.97015 1.98339 1.81192 1.87625 1.34224 1.24342 0.95636 1.01304 0.90683 1.77476 1.20974 0.90062 1.23279 1.22179 0.96285 0.80545 1.03602 0.92014 0.87028 0.87091 0.88071 0.88501 0.89873 0.85893 0.79372 0.76661 0.91052 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.33 13.22 21.65 0.29 -55.05 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 42.61 29.55 68.60 2.03 44.63 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -30.17 9.50 67.96 0.65 -29.52 16 8 H 0.09 4.33 7.80 -2.92 -0.02 4.31 16 9 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 10 C -0.12 -4.48 5.16 71.24 0.37 -4.12 16 11 C 0.55 19.45 7.87 87.66 0.69 20.14 16 12 O -0.56 -25.45 16.19 -3.01 -0.05 -25.50 16 13 N -0.62 -14.40 3.32 -811.37 -2.70 -17.10 16 14 C 0.09 1.29 6.70 86.93 0.58 1.88 16 15 C -0.13 -1.32 6.78 32.06 0.22 -1.10 16 16 C 0.16 2.14 4.05 46.18 0.19 2.33 16 17 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 18 N -0.36 -5.93 3.63 -321.74 -1.17 -7.10 16 19 C 0.07 1.22 10.40 83.54 0.87 2.09 16 20 C -0.20 -3.38 6.65 22.02 0.15 -3.23 16 21 Cl -0.04 -0.70 29.30 -2.72 -0.08 -0.78 16 22 C 0.07 1.04 12.02 85.25 1.02 2.07 16 23 N -0.30 -5.41 12.57 -56.97 -0.72 -6.13 16 24 C 0.10 1.92 6.49 86.73 0.56 2.49 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 27 H 0.11 3.70 7.85 -2.39 -0.02 3.68 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.27 7.48 -2.38 -0.02 1.26 16 30 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.19 2.89 7.02 -2.91 -0.02 2.87 16 33 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.07 1.52 6.01 -2.39 -0.01 1.50 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.71 332.17 3.32 -73.39 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.12 Total: 8.89 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.76 Total: -5.82 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -4.30 Total: -85.37 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.05 Total: -25.50 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -76.71 3.32 -73.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290965157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.977 kcal (2) G-P(sol) polarization free energy of solvation -76.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds