Wall clock time and date at job start Fri Apr 10 2020 23:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41600 * 114.00411 * 2 1 4 4 C 1.46505 * 119.99779 * 90.00214 * 3 2 1 5 5 C 1.50706 * 109.47014 * 255.00023 * 4 3 2 6 6 C 1.38241 * 119.98981 * 269.72617 * 5 4 3 7 7 C 1.38210 * 120.01139 * 179.72300 * 6 5 4 8 8 C 1.38349 * 119.98969 * 0.55498 * 7 6 5 9 9 Cl 1.73598 * 120.01695 * 179.70185 * 8 7 6 10 10 C 1.38361 * 119.97127 * 359.71727 * 8 7 6 11 11 C 1.38214 * 119.98666 * 0.02562 * 10 8 7 12 12 C 1.34779 * 120.00305 * 270.00493 * 3 2 1 13 13 O 1.21284 * 119.99876 * 179.97438 * 12 3 2 14 14 C 1.50693 * 119.99762 * 359.97438 * 12 3 2 15 15 S 1.81000 * 109.46985 * 180.02562 * 14 12 3 16 16 C 1.76207 * 99.99812 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00215 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99723 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99827 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99721 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47455 * 89.99962 * 20 18 16 22 22 H 1.48508 * 109.46789 * 210.00018 * 20 18 16 23 23 H 1.48498 * 109.47190 * 329.99657 * 20 18 16 24 24 H 1.09002 * 109.47277 * 59.99156 * 1 2 3 25 25 H 1.08994 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46800 * 299.99965 * 1 2 3 27 27 H 1.09000 * 109.46864 * 135.00831 * 4 3 2 28 28 H 1.09000 * 109.47078 * 15.00084 * 4 3 2 29 29 H 1.08002 * 119.99152 * 0.02562 * 6 5 4 30 30 H 1.08002 * 120.00562 * 180.27305 * 7 6 5 31 31 H 1.07999 * 120.00328 * 179.97438 * 10 8 7 32 32 H 1.07997 * 119.99198 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.47507 * 300.00125 * 14 12 3 34 34 H 1.09003 * 109.47293 * 60.00176 * 14 12 3 35 35 H 0.97004 * 119.99578 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3030 1.9626 1.2688 5 6 1.2809 3.0413 1.5200 6 6 1.5055 4.3262 1.0619 7 6 0.5659 5.3144 1.2871 8 6 -0.5943 5.0204 1.9810 9 17 -1.7714 6.2630 2.2710 10 6 -0.8159 3.7356 2.4442 11 6 0.1220 2.7469 2.2138 12 6 2.2790 1.9093 -1.1672 13 8 2.7720 3.0174 -1.1671 14 6 1.9730 1.2208 -2.4722 15 16 2.4519 2.2951 -3.8479 16 6 1.9960 1.2719 -5.2082 17 1 1.5619 0.2992 -5.0305 18 6 2.1948 1.7163 -6.5081 19 7 2.7233 2.9022 -6.7245 20 14 1.7108 0.6320 -7.9500 21 1 0.3042 0.9156 -8.3325 22 1 2.6036 0.9138 -9.1028 23 1 1.8399 -0.7953 -7.5613 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.2967 2.4080 1.2200 28 1 2.2702 1.2350 2.0797 29 1 2.4130 4.5565 0.5237 30 1 0.7394 6.3171 0.9253 31 1 -1.7211 3.5056 2.9864 32 1 -0.0506 1.7441 2.5757 33 1 2.5314 0.2865 -2.5299 34 1 0.9051 1.0099 -2.5302 35 1 2.8619 3.2129 -7.6330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292095714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:49 Heat of formation + Delta-G solvation = -8.437645 kcal Electronic energy + Delta-G solvation = -21231.491147 eV Core-core repulsion = 17770.170854 eV Total energy + Delta-G solvation = -3461.320293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.10817 -38.92809 -37.20961 -36.65879 -33.69116 -32.44153 -31.26114 -31.15318 -29.29660 -26.84885 -25.72617 -25.25584 -23.05008 -21.85305 -20.18530 -18.12131 -17.51054 -16.83890 -16.77592 -16.22448 -15.58488 -15.21004 -14.81363 -14.51558 -14.34663 -14.15898 -13.79547 -13.69716 -13.65009 -13.50540 -12.80894 -12.56393 -12.13207 -12.02319 -11.74190 -11.57127 -11.50112 -11.07541 -11.04600 -10.98026 -10.78190 -10.59355 -9.83990 -9.63714 -9.19990 -9.08593 -9.01145 -8.74461 -8.27618 -6.52414 -6.23222 -3.93938 0.81814 1.14200 1.93915 1.97448 2.81893 3.17470 3.21830 3.28774 3.42015 3.47082 4.17447 4.22466 4.49836 4.63915 4.70408 4.94655 5.09259 5.12347 5.15027 5.19049 5.24960 5.35639 5.42663 5.46815 5.54789 5.66231 5.82470 5.88673 5.98572 6.10499 6.17699 6.36336 6.42502 6.63581 7.45815 7.59027 8.29854 8.34461 9.22457 10.84288 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.003388 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.313785 B = 8261.431080 C = 9055.915647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.140 6.140 3 N -0.481 5.481 4 C 0.160 3.840 5 C -0.113 4.113 6 C -0.068 4.068 7 C -0.112 4.112 8 C -0.029 4.029 9 Cl -0.075 7.075 10 C -0.119 4.119 11 C -0.096 4.096 12 C 0.546 3.454 13 O -0.494 6.494 14 C -0.146 4.146 15 S -0.062 6.062 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 -1.256 20.687 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.144 6.144 3 N -0.262 5.262 4 C 0.039 3.961 5 C -0.115 4.115 6 C -0.087 4.087 7 C -0.131 4.131 8 C -0.055 4.055 9 Cl -0.046 7.046 10 C -0.138 4.138 11 C -0.114 4.114 12 C 0.336 3.664 13 O -0.367 6.367 14 C -0.296 4.296 15 S 0.164 5.836 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.196 1.196 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.070 0.930 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.730 0.447 20.563 21.351 hybrid contribution -1.533 -1.899 -0.901 2.602 sum -7.263 -1.452 19.662 21.011 Atomic orbital electron populations 1.23439 0.81995 1.03661 1.01673 1.90634 1.19888 1.07093 1.96756 1.50360 1.60003 1.10122 1.05690 1.20593 0.97454 0.92500 0.85552 1.20403 0.96663 0.95449 0.98969 1.21393 0.99766 0.91569 0.95962 1.21161 0.92576 1.00894 0.98462 1.21006 0.92232 0.90224 1.02070 1.98369 1.57827 1.53503 1.94946 1.20964 1.00279 0.91235 1.01340 1.20986 0.93113 0.98908 0.98440 1.20537 0.76822 0.85036 0.84002 1.90702 1.42562 1.18155 1.85305 1.23501 1.04811 1.04914 0.96389 1.85289 1.82176 1.22642 0.93444 1.22844 1.48223 1.05056 0.92086 0.90894 1.24984 0.94674 0.95496 0.98353 1.70014 1.41016 1.17574 1.21681 0.86171 0.78483 0.80190 0.80697 1.20274 1.20720 1.19643 0.92534 0.87765 0.92952 0.87977 0.88414 0.83449 0.84697 0.85075 0.85360 0.88597 0.89522 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 11.44 101.05 1.16 1.06 16 2 O -0.14 -1.82 10.84 -11.47 -0.12 -1.94 16 3 N -0.48 -6.89 3.01 -61.47 -0.18 -7.08 16 4 C 0.16 1.79 5.85 -5.19 -0.03 1.76 16 5 C -0.11 -1.30 5.25 -104.62 -0.55 -1.85 16 6 C -0.07 -0.87 8.78 -39.59 -0.35 -1.22 16 7 C -0.11 -1.35 9.83 -39.55 -0.39 -1.74 16 8 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 9 Cl -0.08 -0.80 28.96 -51.86 -1.50 -2.30 16 10 C -0.12 -1.19 9.83 -39.54 -0.39 -1.58 16 11 C -0.10 -0.93 8.92 -39.59 -0.35 -1.29 16 12 C 0.55 10.09 7.60 -10.99 -0.08 10.00 16 13 O -0.49 -10.15 13.42 5.55 0.07 -10.08 16 14 C -0.15 -3.01 5.46 36.00 0.20 -2.81 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.53 -15.16 9.50 30.94 0.29 -14.86 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 20 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H 0.06 0.66 7.13 -51.93 -0.37 0.29 16 25 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.46 6.47 -51.93 -0.34 0.12 16 27 H 0.10 1.15 7.84 -51.93 -0.41 0.74 16 28 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.15 2.04 6.78 -52.49 -0.36 1.69 16 30 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.13 0.95 7.26 -52.49 -0.38 0.57 16 33 H 0.10 1.92 8.14 -51.92 -0.42 1.50 16 34 H 0.09 1.69 7.13 -51.92 -0.37 1.32 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -32.60 334.38 -7.91 -40.51 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.88 Total: -0.29 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.84 Total: -11.09 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.55 Total: -32.29 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.05 Total: -12.02 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.60 -7.91 -40.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292095714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.073 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds