Wall clock time and date at job start Fri Apr 10 2020 23:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41600 * 114.00411 * 2 1 4 4 C 1.46505 * 119.99779 * 90.00214 * 3 2 1 5 5 C 1.50706 * 109.47014 * 255.00023 * 4 3 2 6 6 C 1.38241 * 119.98981 * 269.72617 * 5 4 3 7 7 C 1.38210 * 120.01139 * 179.72300 * 6 5 4 8 8 C 1.38349 * 119.98969 * 0.55498 * 7 6 5 9 9 Cl 1.73598 * 120.01695 * 179.70185 * 8 7 6 10 10 C 1.38361 * 119.97127 * 359.71727 * 8 7 6 11 11 C 1.38214 * 119.98666 * 0.02562 * 10 8 7 12 12 C 1.34779 * 120.00305 * 270.00493 * 3 2 1 13 13 O 1.21284 * 119.99876 * 179.97438 * 12 3 2 14 14 C 1.50693 * 119.99762 * 359.97438 * 12 3 2 15 15 S 1.81000 * 109.46985 * 180.02562 * 14 12 3 16 16 C 1.76207 * 99.99812 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00215 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99723 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99827 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99721 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47455 * 89.99962 * 20 18 16 22 22 H 1.48508 * 109.46789 * 210.00018 * 20 18 16 23 23 H 1.48498 * 109.47190 * 329.99657 * 20 18 16 24 24 H 1.09002 * 109.47277 * 59.99156 * 1 2 3 25 25 H 1.08994 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46800 * 299.99965 * 1 2 3 27 27 H 1.09000 * 109.46864 * 135.00831 * 4 3 2 28 28 H 1.09000 * 109.47078 * 15.00084 * 4 3 2 29 29 H 1.08002 * 119.99152 * 0.02562 * 6 5 4 30 30 H 1.08002 * 120.00562 * 180.27305 * 7 6 5 31 31 H 1.07999 * 120.00328 * 179.97438 * 10 8 7 32 32 H 1.07997 * 119.99198 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.47507 * 300.00125 * 14 12 3 34 34 H 1.09003 * 109.47293 * 60.00176 * 14 12 3 35 35 H 0.97004 * 119.99578 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3030 1.9626 1.2688 5 6 1.2809 3.0413 1.5200 6 6 1.5055 4.3262 1.0619 7 6 0.5659 5.3144 1.2871 8 6 -0.5943 5.0204 1.9810 9 17 -1.7714 6.2630 2.2710 10 6 -0.8159 3.7356 2.4442 11 6 0.1220 2.7469 2.2138 12 6 2.2790 1.9093 -1.1672 13 8 2.7720 3.0174 -1.1671 14 6 1.9730 1.2208 -2.4722 15 16 2.4519 2.2951 -3.8479 16 6 1.9960 1.2719 -5.2082 17 1 1.5619 0.2992 -5.0305 18 6 2.1948 1.7163 -6.5081 19 7 2.7233 2.9022 -6.7245 20 14 1.7108 0.6320 -7.9500 21 1 0.3042 0.9156 -8.3325 22 1 2.6036 0.9138 -9.1028 23 1 1.8399 -0.7953 -7.5613 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.2967 2.4080 1.2200 28 1 2.2702 1.2350 2.0797 29 1 2.4130 4.5565 0.5237 30 1 0.7394 6.3171 0.9253 31 1 -1.7211 3.5056 2.9864 32 1 -0.0506 1.7441 2.5757 33 1 2.5314 0.2865 -2.5299 34 1 0.9051 1.0099 -2.5302 35 1 2.8619 3.2129 -7.6330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292095714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:48 Heat of formation + Delta-G solvation = -27.439348 kcal Electronic energy + Delta-G solvation = -21232.315123 eV Core-core repulsion = 17770.170854 eV Total energy + Delta-G solvation = -3462.144269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.22451 -39.98659 -38.37214 -37.51297 -34.70653 -34.58467 -32.36417 -32.08165 -30.68974 -27.77684 -27.65603 -26.50095 -23.90004 -22.83398 -21.38384 -19.96927 -18.49350 -18.35616 -17.86004 -17.27584 -16.88805 -16.48481 -16.16687 -15.95931 -15.71355 -15.30324 -15.23338 -14.71489 -14.56132 -14.48986 -14.37843 -13.76348 -13.42645 -13.19870 -12.91353 -12.89947 -12.73301 -12.62866 -12.42416 -12.34895 -11.85423 -11.74814 -11.59074 -11.15096 -10.98979 -10.32026 -10.21075 -10.02772 -9.65570 -8.67935 -8.35922 -6.13817 -0.08496 0.29229 0.87375 1.09251 1.30501 1.39466 1.41929 1.50243 1.63165 2.25927 2.59212 2.90259 2.98480 3.40034 3.67854 3.75920 3.90799 4.12310 4.15339 4.19910 4.30643 4.38256 4.43642 4.50393 4.54016 4.58889 4.70960 4.78051 4.98481 5.14797 5.22183 5.26954 5.40862 5.49822 5.77773 6.18702 6.29112 6.94233 7.05649 8.73239 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.003388 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.313785 B = 8261.431080 C = 9055.915647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.145 6.145 3 N -0.470 5.470 4 C 0.159 3.841 5 C -0.120 4.120 6 C -0.087 4.087 7 C -0.128 4.128 8 C -0.037 4.037 9 Cl -0.072 7.072 10 C -0.117 4.117 11 C -0.085 4.085 12 C 0.544 3.456 13 O -0.525 6.525 14 C -0.122 4.122 15 S -0.139 6.139 16 C -0.548 4.548 17 H 0.079 0.921 18 C 0.016 3.984 19 N -0.909 5.909 20 Si 0.997 3.003 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.259 1.259 24 H 0.037 0.963 25 H 0.136 0.864 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 -3.760 22.069 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.148 6.148 3 N -0.249 5.249 4 C 0.040 3.960 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.146 4.146 8 C -0.064 4.064 9 Cl -0.043 7.043 10 C -0.135 4.135 11 C -0.104 4.104 12 C 0.333 3.667 13 O -0.401 6.401 14 C -0.273 4.273 15 S 0.088 5.912 16 C -0.696 4.696 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.818 3.182 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.183 1.183 24 H 0.056 0.944 25 H 0.153 0.847 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.154 0.846 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.484 -2.077 21.993 23.324 hybrid contribution -1.051 -1.147 -1.182 1.954 sum -8.535 -3.224 20.811 22.723 Atomic orbital electron populations 1.23693 0.80118 1.05731 1.01758 1.90631 1.21775 1.05643 1.96793 1.50117 1.59076 1.10422 1.05304 1.20845 0.97218 0.93226 0.84755 1.20445 0.97550 0.94680 0.99456 1.21325 0.99497 0.92897 0.96908 1.21211 0.93216 1.00913 0.99299 1.21153 0.92004 0.91113 1.02140 1.98368 1.57476 1.53578 1.94884 1.21310 1.01129 0.90448 1.00607 1.21307 0.91755 1.00316 0.97008 1.20101 0.77237 0.84751 0.84587 1.90704 1.44067 1.19322 1.85964 1.23302 1.05317 1.03531 0.95192 1.85392 1.83040 1.25963 0.96800 1.23178 1.48365 1.05309 0.92762 0.90242 1.26087 0.94283 0.96942 1.01541 1.70168 1.42228 1.19631 1.22532 0.84983 0.78369 0.78411 0.76423 1.19259 1.20145 1.18306 0.94380 0.84654 0.90878 0.88565 0.84619 0.85643 0.84873 0.82542 0.82002 0.87989 0.88397 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.27 11.44 113.37 1.30 1.03 16 2 O -0.14 -3.34 10.84 -38.78 -0.42 -3.76 16 3 N -0.47 -12.70 3.01 -466.77 -1.40 -14.10 16 4 C 0.16 3.26 5.85 85.63 0.50 3.76 16 5 C -0.12 -2.57 5.25 -19.86 -0.10 -2.67 16 6 C -0.09 -2.29 8.78 22.26 0.20 -2.09 16 7 C -0.13 -3.14 9.83 22.29 0.22 -2.92 16 8 C -0.04 -0.80 6.32 22.33 0.14 -0.66 16 9 Cl -0.07 -1.46 28.96 -2.72 -0.08 -1.53 16 10 C -0.12 -2.00 9.83 22.29 0.22 -1.78 16 11 C -0.09 -1.38 8.92 22.27 0.20 -1.18 16 12 C 0.54 20.15 7.60 87.65 0.67 20.81 16 13 O -0.52 -22.36 13.42 -3.04 -0.04 -22.40 16 14 C -0.12 -5.07 5.46 71.23 0.39 -4.68 16 15 S -0.14 -7.69 20.57 -56.49 -1.16 -8.86 16 16 C -0.55 -31.49 9.50 67.96 0.65 -30.85 16 17 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 18 C 0.02 0.94 5.49 84.86 0.47 1.40 16 19 N -0.91 -55.57 13.22 21.65 0.29 -55.28 16 20 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 24 H 0.04 0.80 7.13 -2.39 -0.02 0.78 16 25 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 0.94 6.47 -2.39 -0.02 0.92 16 27 H 0.10 2.12 7.84 -2.39 -0.02 2.10 16 28 H 0.14 1.75 8.08 -2.39 -0.02 1.73 16 29 H 0.13 3.78 6.78 -2.91 -0.02 3.76 16 30 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 31 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.16 1.51 7.26 -2.91 -0.02 1.49 16 33 H 0.10 4.06 8.14 -2.40 -0.02 4.04 16 34 H 0.10 3.79 7.13 -2.39 -0.02 3.77 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -72.90 334.38 5.16 -67.74 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.11 Total: 12.39 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 4.83 Total: -19.82 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -1.12 Total: -69.38 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.46 Total: -26.15 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -7.69 SS G_CDS: -1.16 Total: -8.86 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.53 kcal Total: -72.90 5.16 -67.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292095714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.304 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds