Wall clock time and date at job start Fri Apr 10 2020 23:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99777 * 2 1 4 4 H 1.48497 * 109.46792 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46980 * 300.00127 * 3 2 1 6 6 H 1.48498 * 109.46996 * 59.99932 * 3 2 1 7 7 C 1.37876 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47212 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 C 1.38219 * 119.98880 * 269.72882 * 16 15 14 18 18 C 1.38360 * 120.01484 * 179.76776 * 17 16 15 19 19 Cl 1.73598 * 120.01018 * 180.27271 * 18 17 16 20 20 C 1.38340 * 119.98393 * 0.52584 * 18 17 16 21 21 C 1.38327 * 119.97293 * 359.72675 * 20 18 17 22 22 Cl 1.73599 * 120.00412 * 179.97438 * 21 20 18 23 23 C 1.38226 * 119.98471 * 89.99926 * 16 15 14 24 24 H 0.96993 * 120.00405 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46832 * 60.00036 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00227 * 10 9 7 29 29 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 30 30 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 31 31 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 32 32 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 33 33 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 34 34 H 1.08000 * 119.99094 * 359.97438 * 17 16 15 35 35 H 1.08000 * 120.01027 * 179.70383 * 20 18 17 36 36 H 1.08001 * 119.99425 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1343 -0.0008 14 6 1.4334 -7.4031 -0.0008 15 6 2.4277 -8.5660 -0.0009 16 6 1.6743 -9.8711 -0.0003 17 6 1.3343 -10.4720 1.1970 18 6 0.6384 -11.6678 1.1982 19 17 0.2052 -12.4188 2.7022 20 6 0.2924 -12.2676 0.0006 21 6 0.6375 -11.6684 -1.1974 22 17 0.2044 -12.4206 -2.7008 23 6 1.3285 -10.4696 -1.1973 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8905 29 1 3.1359 -6.1343 -0.0004 30 1 0.8065 -7.4607 0.8890 31 1 0.8070 -7.4610 -0.8910 32 1 3.0543 -8.5082 -0.8910 33 1 3.0544 -8.5083 0.8889 34 1 1.6090 -10.0062 2.1319 35 1 -0.2466 -13.2035 0.0010 36 1 1.5979 -10.0016 -2.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292352198.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:55 Heat of formation + Delta-G solvation = -51.546685 kcal Electronic energy + Delta-G solvation = -19887.599082 eV Core-core repulsion = 16422.365735 eV Total energy + Delta-G solvation = -3465.233348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15623 -39.10386 -37.18508 -36.92165 -35.35330 -33.45048 -32.81865 -31.11913 -30.99890 -28.86610 -25.82900 -23.91701 -23.29881 -21.75589 -21.41146 -19.65454 -17.62936 -16.84108 -16.61206 -16.22421 -15.77940 -15.57194 -15.32347 -14.82166 -14.44235 -14.33973 -13.99598 -13.69512 -13.15270 -12.77401 -12.51393 -12.41497 -12.39224 -12.16492 -12.15626 -11.48328 -11.42891 -11.33400 -11.30766 -11.15619 -10.94588 -10.58365 -9.96697 -9.67465 -9.34880 -9.20412 -9.17140 -9.00504 -8.83581 -8.32585 -5.96448 -4.00885 0.50900 0.54798 1.36884 1.82425 2.89988 3.23992 3.32274 3.38923 3.41977 3.47760 4.17332 4.45580 4.47674 4.49157 4.55288 4.66908 4.77579 4.99621 5.04291 5.30076 5.38547 5.52126 5.53520 5.59236 5.59309 5.91631 5.93793 6.05165 6.21937 6.23279 6.66043 6.88686 7.74318 7.84740 7.85931 8.06951 8.38267 8.76072 9.08050 9.62762 11.14554 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.002031 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.621926 B =13781.917609 C =14484.519617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.533 6.533 13 N -0.746 5.746 14 C 0.124 3.876 15 C -0.092 4.092 16 C -0.051 4.051 17 C -0.100 4.100 18 C -0.021 4.021 19 Cl -0.057 7.057 20 C -0.107 4.107 21 C -0.021 4.021 22 Cl -0.057 7.057 23 C -0.100 4.100 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.398 0.602 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 -29.110 0.002 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.408 6.408 13 N -0.401 5.401 14 C -0.001 4.001 15 C -0.130 4.130 16 C -0.052 4.052 17 C -0.119 4.119 18 C -0.048 4.048 19 Cl -0.028 7.028 20 C -0.127 4.127 21 C -0.048 4.048 22 Cl -0.028 7.028 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.231 0.769 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.577 -29.114 0.002 29.472 hybrid contribution 0.755 0.650 0.000 0.997 sum 5.333 -28.464 0.002 28.960 Atomic orbital electron populations 1.70007 1.06058 1.26487 1.50279 1.25037 0.94829 0.99261 0.95330 0.86535 0.79989 0.83841 0.77589 1.19753 1.21021 1.21017 1.21259 0.92959 0.91001 1.51255 0.92544 1.18908 0.93206 0.89418 0.98638 1.21865 1.00709 0.91885 1.02497 1.21585 0.88670 0.85624 0.74372 1.90680 1.14510 1.87620 1.48001 1.46191 1.10044 1.05478 1.78378 1.21189 0.94090 0.82037 1.02738 1.20844 0.97546 0.90061 1.04534 1.19594 0.97797 0.96091 0.91717 1.21119 0.97758 0.93738 0.99248 1.20724 1.01316 0.95469 0.87310 1.98400 1.91761 1.81577 1.31064 1.20901 1.01266 1.01202 0.89313 1.20722 1.01350 0.95433 0.87316 1.98400 1.91762 1.81521 1.31123 1.21121 0.97777 0.93705 0.99259 0.92994 0.95819 0.95828 0.90210 0.90221 0.76861 0.91532 0.91539 0.89468 0.89475 0.83982 0.83868 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 10 C -0.13 -2.56 5.64 -27.88 -0.16 -2.72 16 11 C 0.51 9.50 7.83 -10.99 -0.09 9.41 16 12 O -0.53 -12.48 15.98 5.56 0.09 -12.39 16 13 N -0.75 -9.52 5.56 -60.29 -0.33 -9.86 16 14 C 0.12 1.36 5.66 -4.04 -0.02 1.34 16 15 C -0.09 -0.64 5.46 -27.89 -0.15 -0.79 16 16 C -0.05 -0.39 5.13 -104.64 -0.54 -0.92 16 17 C -0.10 -0.77 9.48 -39.54 -0.38 -1.15 16 18 C -0.02 -0.17 6.32 -39.50 -0.25 -0.42 16 19 Cl -0.06 -0.45 28.96 -51.86 -1.50 -1.95 16 20 C -0.11 -0.84 9.62 -39.51 -0.38 -1.22 16 21 C -0.02 -0.17 6.32 -39.50 -0.25 -0.42 16 22 Cl -0.06 -0.45 28.96 -51.86 -1.50 -1.95 16 23 C -0.10 -0.77 9.49 -39.54 -0.38 -1.15 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.40 3.71 8.47 -40.82 -0.35 3.36 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -34.04 347.00 -9.95 -43.99 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.53 Total: -2.11 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -3.11 Total: -10.82 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.40 Total: -36.55 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -3.00 Total: -3.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.04 -9.95 -43.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292352198.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.557 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds