Wall clock time and date at job start Fri Apr 10 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99777 * 2 1 4 4 H 1.48497 * 109.46792 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46980 * 300.00127 * 3 2 1 6 6 H 1.48498 * 109.46996 * 59.99932 * 3 2 1 7 7 C 1.37876 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47212 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 C 1.38219 * 119.98880 * 269.72882 * 16 15 14 18 18 C 1.38360 * 120.01484 * 179.76776 * 17 16 15 19 19 Cl 1.73598 * 120.01018 * 180.27271 * 18 17 16 20 20 C 1.38340 * 119.98393 * 0.52584 * 18 17 16 21 21 C 1.38327 * 119.97293 * 359.72675 * 20 18 17 22 22 Cl 1.73599 * 120.00412 * 179.97438 * 21 20 18 23 23 C 1.38226 * 119.98471 * 89.99926 * 16 15 14 24 24 H 0.96993 * 120.00405 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46832 * 60.00036 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00227 * 10 9 7 29 29 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 30 30 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 31 31 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 32 32 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 33 33 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 34 34 H 1.08000 * 119.99094 * 359.97438 * 17 16 15 35 35 H 1.08000 * 120.01027 * 179.70383 * 20 18 17 36 36 H 1.08001 * 119.99425 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1343 -0.0008 14 6 1.4334 -7.4031 -0.0008 15 6 2.4277 -8.5660 -0.0009 16 6 1.6743 -9.8711 -0.0003 17 6 1.3343 -10.4720 1.1970 18 6 0.6384 -11.6678 1.1982 19 17 0.2052 -12.4188 2.7022 20 6 0.2924 -12.2676 0.0006 21 6 0.6375 -11.6684 -1.1974 22 17 0.2044 -12.4206 -2.7008 23 6 1.3285 -10.4696 -1.1973 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8905 29 1 3.1359 -6.1343 -0.0004 30 1 0.8065 -7.4607 0.8890 31 1 0.8070 -7.4610 -0.8910 32 1 3.0543 -8.5082 -0.8910 33 1 3.0544 -8.5083 0.8889 34 1 1.6090 -10.0062 2.1319 35 1 -0.2466 -13.2035 0.0010 36 1 1.5979 -10.0016 -2.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292352198.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:53 Heat of formation + Delta-G solvation = -72.415773 kcal Electronic energy + Delta-G solvation = -19888.504034 eV Core-core repulsion = 16422.365735 eV Total energy + Delta-G solvation = -3466.138299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.88641 -40.42210 -37.79009 -37.57558 -36.39535 -35.52061 -33.78089 -32.86071 -31.70524 -29.82142 -27.61296 -25.02483 -23.89131 -23.28166 -22.32510 -21.11205 -18.82311 -18.20050 -17.34523 -17.26236 -17.05559 -16.66677 -16.56852 -16.36817 -15.53209 -15.10126 -15.07148 -14.70481 -14.38255 -14.07541 -13.98883 -13.38315 -13.23914 -13.16241 -12.97765 -12.95646 -12.82840 -12.42802 -12.23378 -12.03832 -11.96343 -11.93489 -11.89201 -11.61136 -11.26432 -10.72862 -10.56648 -10.04938 -9.90562 -9.79458 -8.16748 -6.30600 -0.08690 -0.05205 0.76726 1.22153 1.43504 1.44794 1.58077 1.75699 2.19134 2.39514 2.48500 3.16468 3.53906 3.90215 3.92207 3.97616 3.99075 4.10873 4.19243 4.36340 4.38841 4.55567 4.60433 4.67313 4.83546 4.95574 5.01300 5.04025 5.15914 5.32811 5.46568 5.49698 5.55183 5.66111 5.87939 6.19508 6.66942 6.88896 7.39077 7.41190 8.96190 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.002031 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.621926 B =13781.917609 C =14484.519617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.974 3.026 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.119 4.119 11 C 0.509 3.491 12 O -0.592 6.592 13 N -0.717 5.717 14 C 0.122 3.878 15 C -0.078 4.078 16 C -0.055 4.055 17 C -0.103 4.103 18 C -0.031 4.031 19 Cl -0.059 7.059 20 C -0.110 4.110 21 C -0.031 4.031 22 Cl -0.059 7.059 23 C -0.103 4.103 24 H 0.262 0.738 25 H -0.019 1.019 26 H -0.019 1.019 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.420 0.580 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.680 -29.481 0.004 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.798 3.202 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.096 0.904 9 C 0.002 3.998 10 C -0.159 4.159 11 C 0.298 3.702 12 O -0.472 6.472 13 N -0.371 5.371 14 C -0.001 4.001 15 C -0.115 4.115 16 C -0.056 4.056 17 C -0.121 4.121 18 C -0.058 4.058 19 Cl -0.030 7.030 20 C -0.130 4.130 21 C -0.058 4.058 22 Cl -0.030 7.030 23 C -0.121 4.121 24 H 0.071 0.929 25 H -0.001 1.001 26 H -0.001 1.001 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.258 0.742 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.612 -29.539 0.003 30.504 hybrid contribution -0.198 0.672 0.000 0.700 sum 7.414 -28.867 0.003 29.804 Atomic orbital electron populations 1.70188 1.08347 1.27706 1.51698 1.26160 0.95722 1.04020 0.94758 0.85271 0.79377 0.78101 0.77471 1.17450 1.20744 1.20732 1.21767 0.94063 0.91575 1.50403 0.90431 1.18709 0.93820 0.92664 0.94622 1.21633 0.99231 0.89994 1.05023 1.21347 0.87769 0.86936 0.74168 1.90668 1.16937 1.88463 1.51157 1.45831 1.11136 1.04457 1.75641 1.21287 0.94994 0.82370 1.01482 1.20761 0.96520 0.87524 1.06692 1.19645 0.98060 0.96349 0.91560 1.21323 0.97332 0.93588 0.99894 1.20822 1.01798 0.95849 0.87341 1.98398 1.91814 1.81636 1.31121 1.21046 1.01097 1.01552 0.89270 1.20819 1.01831 0.95810 0.87346 1.98398 1.91814 1.81580 1.31180 1.21325 0.97353 0.93560 0.99906 0.92914 1.00059 1.00066 0.87554 0.87565 0.74236 0.92925 0.92926 0.87346 0.87352 0.82887 0.83043 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.69 13.29 21.45 0.28 -59.40 16 2 C -0.01 -0.55 5.46 84.65 0.46 -0.09 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 4 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.18 4.26 29.85 0.13 2.31 16 10 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 11 C 0.51 18.78 7.83 87.66 0.69 19.46 16 12 O -0.59 -28.74 15.98 -3.03 -0.05 -28.78 16 13 N -0.72 -16.67 5.56 -463.06 -2.57 -19.24 16 14 C 0.12 2.50 5.66 86.38 0.49 2.99 16 15 C -0.08 -0.84 5.46 29.85 0.16 -0.67 16 16 C -0.05 -0.72 5.13 -19.87 -0.10 -0.82 16 17 C -0.10 -1.42 9.48 22.29 0.21 -1.21 16 18 C -0.03 -0.47 6.32 22.32 0.14 -0.33 16 19 Cl -0.06 -0.88 28.96 -2.72 -0.08 -0.96 16 20 C -0.11 -1.63 9.62 22.32 0.21 -1.41 16 21 C -0.03 -0.47 6.32 22.32 0.14 -0.33 16 22 Cl -0.06 -0.88 28.96 -2.72 -0.08 -0.96 16 23 C -0.10 -1.42 9.49 22.30 0.21 -1.21 16 24 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 25 H -0.02 -1.20 8.10 -2.39 -0.02 -1.21 16 26 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 27 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 28 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.42 6.17 8.47 -92.71 -0.79 5.39 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 0.78 8.09 -2.39 -0.02 0.76 16 33 H 0.11 0.78 8.08 -2.39 -0.02 0.76 16 34 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -77.62 347.00 3.00 -74.62 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 0.32 Total: 4.59 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 3.15 Total: -15.93 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.29 Total: -78.65 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.78 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.16 Total: -1.92 kcal Total: -77.62 3.00 -74.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292352198.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.206 kcal (2) G-P(sol) polarization free energy of solvation -77.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds