Wall clock time and date at job start Fri Apr 10 2020 23:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48501 * 109.47028 * 239.99705 * 3 2 1 5 5 H 1.48498 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47102 * 119.99648 * 3 2 1 7 7 C 1.37880 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47117 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00231 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99992 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99825 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47252 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47419 * 179.97438 * 15 14 13 17 17 C 1.38335 * 120.01238 * 89.99561 * 16 15 14 18 18 Cl 1.73594 * 120.00730 * 359.70413 * 17 16 15 19 19 C 1.38366 * 119.98539 * 179.97438 * 17 16 15 20 20 C 1.38221 * 120.00990 * 0.02562 * 19 17 16 21 21 C 1.38216 * 120.03026 * 359.97438 * 20 19 17 22 22 C 1.38329 * 120.01281 * 269.97224 * 16 15 14 23 23 Cl 1.73600 * 120.00459 * 0.02562 * 22 16 15 24 24 H 0.96995 * 119.99476 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46834 * 59.99511 * 9 7 2 26 26 H 1.09005 * 109.46957 * 299.99427 * 9 7 2 27 27 H 1.09005 * 109.47341 * 60.00071 * 10 9 7 28 28 H 1.09003 * 109.47541 * 299.99519 * 10 9 7 29 29 H 0.96993 * 119.99667 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.47587 * 59.99632 * 14 13 11 31 31 H 1.09000 * 109.47382 * 299.99588 * 14 13 11 32 32 H 1.08995 * 109.47471 * 59.99287 * 15 14 13 33 33 H 1.09010 * 109.46929 * 299.99704 * 15 14 13 34 34 H 1.07991 * 119.98945 * 179.97438 * 19 17 16 35 35 H 1.07998 * 119.98223 * 180.02562 * 20 19 17 36 36 H 1.08002 * 119.99587 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1657 -6.1344 0.0003 14 6 1.4332 -7.4031 -0.0009 15 6 2.4273 -8.5660 0.0005 16 6 1.6738 -9.8711 0.0000 17 6 1.3292 -10.4706 -1.1982 18 17 1.7578 -9.7158 -2.7015 19 6 0.6378 -11.6691 -1.1981 20 6 0.2911 -12.2671 -0.0011 21 6 0.6352 -11.6687 1.1963 22 6 1.3270 -10.4704 1.1975 23 17 1.7591 -9.7188 2.7015 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6241 -2.5568 0.8904 27 1 2.8720 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8895 29 1 3.1356 -6.1344 0.0006 30 1 0.8074 -7.4606 -0.8915 31 1 0.8056 -7.4612 0.8884 32 1 3.0527 -8.5084 0.8913 33 1 3.0553 -8.5083 -0.8886 34 1 0.3684 -12.1370 -2.1333 35 1 -0.2481 -13.2028 -0.0015 36 1 0.3637 -12.1362 2.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292429475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:57 Heat of formation + Delta-G solvation = -69.279917 kcal Electronic energy + Delta-G solvation = -20426.815380 eV Core-core repulsion = 16960.813062 eV Total energy + Delta-G solvation = -3466.002318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93146 -40.43321 -37.79020 -37.28215 -36.65732 -35.53985 -33.90371 -32.89047 -31.63865 -29.77320 -27.61483 -25.03355 -23.88574 -23.30285 -22.37904 -21.14784 -18.83808 -18.27220 -17.46312 -17.41560 -17.16255 -16.58025 -16.49852 -16.26361 -15.37489 -15.22298 -15.13874 -14.63478 -14.41377 -14.09169 -14.03991 -13.42455 -13.24864 -13.22594 -12.99290 -12.90688 -12.76166 -12.50234 -12.32234 -12.12298 -11.90113 -11.84056 -11.82549 -11.63391 -11.31831 -10.76695 -10.55731 -10.10381 -9.86076 -9.76692 -8.17277 -6.31521 -0.05248 -0.02395 0.82049 1.25675 1.42173 1.46991 1.54653 1.71729 2.19029 2.41416 2.47168 3.15462 3.54148 3.68140 3.83570 3.91381 4.12386 4.16610 4.19909 4.35686 4.36616 4.52350 4.56686 4.65825 4.73940 4.93924 5.07151 5.11345 5.12408 5.20227 5.42612 5.51562 5.56752 5.64102 5.86209 6.18245 6.60803 6.86891 7.34657 7.38813 8.95335 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.002548 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.901754 B =10986.968461 C =11706.279689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.119 4.119 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.717 5.717 14 C 0.133 3.867 15 C -0.091 4.091 16 C -0.080 4.080 17 C -0.036 4.036 18 Cl -0.060 7.060 19 C -0.106 4.106 20 C -0.088 4.088 21 C -0.106 4.106 22 C -0.036 4.036 23 Cl -0.060 7.060 24 H 0.263 0.737 25 H -0.019 1.019 26 H -0.019 1.019 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.418 0.582 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.160 0.840 35 H 0.177 0.823 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 -31.038 -0.002 31.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.158 4.158 11 C 0.299 3.701 12 O -0.470 6.470 13 N -0.371 5.371 14 C 0.009 3.991 15 C -0.128 4.128 16 C -0.082 4.082 17 C -0.063 4.063 18 Cl -0.031 7.031 19 C -0.124 4.124 20 C -0.106 4.106 21 C -0.124 4.124 22 C -0.063 4.063 23 Cl -0.031 7.031 24 H 0.071 0.929 25 H 0.000 1.000 26 H 0.000 1.000 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.255 0.745 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.178 0.822 35 H 0.194 0.806 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.487 -30.805 -0.002 31.480 hybrid contribution 0.275 1.208 -0.001 1.239 sum 6.762 -29.597 -0.003 30.360 Atomic orbital electron populations 1.70179 1.08346 1.27865 1.51449 1.26161 0.95734 1.04004 0.94639 0.85362 0.78039 0.77271 0.79498 1.18657 1.21355 1.18647 1.21697 0.94024 0.91595 1.50847 0.90521 1.18684 0.93726 0.92511 0.94641 1.21641 0.99301 0.89913 1.04970 1.21376 0.87820 0.86762 0.74112 1.90655 1.16804 1.88410 1.51094 1.45835 1.11020 1.04481 1.75734 1.21089 0.94627 0.82220 1.01149 1.20818 0.97260 0.88891 1.05867 1.19368 1.00734 0.97271 0.90840 1.20897 1.02617 0.96272 0.86480 1.98399 1.91869 1.81856 1.31010 1.21517 0.96657 0.93070 1.01181 1.21507 0.98227 1.00972 0.89870 1.21516 0.96685 0.93050 1.01177 1.20895 1.02599 0.96295 0.86474 1.98400 1.91767 1.82016 1.30955 0.92864 1.00026 1.00021 0.87604 0.87616 0.74493 0.93039 0.93051 0.88228 0.88222 0.82249 0.80598 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.48 13.29 21.45 0.28 -60.20 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.39 4.26 29.85 0.13 2.52 16 10 C -0.12 -4.85 5.64 29.85 0.17 -4.69 16 11 C 0.51 20.49 7.83 87.66 0.69 21.17 16 12 O -0.59 -30.18 15.98 -3.02 -0.05 -30.22 16 13 N -0.72 -20.19 5.56 -463.06 -2.57 -22.76 16 14 C 0.13 3.53 5.66 86.38 0.49 4.02 16 15 C -0.09 -1.70 4.66 29.85 0.14 -1.56 16 16 C -0.08 -1.46 5.14 -19.82 -0.10 -1.56 16 17 C -0.04 -0.60 6.31 22.32 0.14 -0.46 16 18 Cl -0.06 -1.10 27.30 -2.72 -0.07 -1.18 16 19 C -0.11 -1.25 9.83 22.30 0.22 -1.03 16 20 C -0.09 -0.77 10.04 22.26 0.22 -0.55 16 21 C -0.11 -1.25 9.83 22.29 0.22 -1.03 16 22 C -0.04 -0.60 6.31 22.32 0.14 -0.46 16 23 Cl -0.06 -1.10 27.30 -2.72 -0.07 -1.18 16 24 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 25 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 26 H -0.02 -1.20 8.10 -2.38 -0.02 -1.22 16 27 H 0.11 3.78 8.14 -2.38 -0.02 3.76 16 28 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 29 H 0.42 8.39 8.47 -92.71 -0.79 7.60 16 30 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.67 6.90 -2.39 -0.02 1.66 16 33 H 0.10 1.67 6.91 -2.38 -0.02 1.66 16 34 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 36 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -79.44 341.64 3.01 -76.43 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.32 Total: 7.09 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 3.15 Total: -14.81 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.29 Total: -82.96 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.05 Total: -30.22 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.15 Total: -2.35 kcal Total: -79.44 3.01 -76.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292429475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.148 kcal (2) G-P(sol) polarization free energy of solvation -79.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds