Wall clock time and date at job start Fri Apr 10 2020 23:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41605 * 114.00122 * 2 1 4 4 C 1.46495 * 119.99577 * 90.00042 * 3 2 1 5 5 C 1.50701 * 109.46926 * 103.75287 * 4 3 2 6 6 C 1.38236 * 120.00934 * 102.78799 * 5 4 3 7 7 C 1.38218 * 120.01752 * 179.97438 * 6 5 4 8 8 C 1.38265 * 120.02495 * 0.03903 * 7 6 5 9 9 C 1.38197 * 120.01147 * 359.97438 * 8 7 6 10 10 C 1.38331 * 120.00748 * 282.50784 * 5 4 3 11 11 Cl 1.73601 * 120.01017 * 359.97438 * 10 5 4 12 12 C 1.34771 * 119.99717 * 270.00145 * 3 2 1 13 13 O 1.21293 * 119.99614 * 184.92720 * 12 3 2 14 14 C 1.50694 * 120.00560 * 4.92861 * 12 3 2 15 15 S 1.81000 * 109.47329 * 179.97438 * 14 12 3 16 16 C 1.76208 * 99.99893 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99552 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00285 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99528 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47196 * 90.00196 * 20 18 16 22 22 H 1.48505 * 109.47039 * 210.00000 * 20 18 16 23 23 H 1.48503 * 109.47215 * 329.99911 * 20 18 16 24 24 H 1.08999 * 109.47308 * 59.99491 * 1 2 3 25 25 H 1.09000 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46769 * 300.00104 * 1 2 3 27 27 H 1.09002 * 109.47025 * 223.74915 * 4 3 2 28 28 H 1.08995 * 109.47796 * 343.75231 * 4 3 2 29 29 H 1.08001 * 119.99299 * 359.97438 * 6 5 4 30 30 H 1.07997 * 119.99162 * 180.02562 * 7 6 5 31 31 H 1.07998 * 119.99772 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.00555 * 180.02562 * 9 8 7 33 33 H 1.09004 * 109.46922 * 299.99981 * 14 12 3 34 34 H 1.08998 * 109.47319 * 59.99810 * 14 12 3 35 35 H 0.97000 * 120.00033 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9627 1.2687 5 6 3.7848 1.8979 1.5349 6 6 4.5756 3.0106 1.3169 7 6 5.9347 2.9516 1.5615 8 6 6.5043 1.7795 2.0234 9 6 5.7148 0.6664 2.2414 10 6 4.3532 0.7268 2.0028 11 17 3.3594 -0.6685 2.2843 12 6 2.2790 1.9092 -1.1672 13 8 2.8535 2.9774 -1.1691 14 6 1.8718 1.2703 -2.4698 15 16 2.3751 2.3327 -3.8462 16 6 1.7929 1.3715 -5.2034 17 1 1.2963 0.4294 -5.0241 18 6 1.9735 1.8247 -6.5028 19 7 2.5801 2.9723 -6.7212 20 14 1.3569 0.8054 -7.9416 21 1 -0.0389 1.1969 -8.2634 22 1 2.2230 1.0436 -9.1242 23 1 1.3966 -0.6347 -7.5811 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9891 3.0050 1.2123 28 1 1.7666 1.4651 2.0767 29 1 4.1314 3.9263 0.9555 30 1 6.5521 3.8213 1.3915 31 1 7.5664 1.7337 2.2140 32 1 6.1598 -0.2490 2.6027 33 1 2.3560 0.2983 -2.5648 34 1 0.7898 1.1406 -2.4883 35 1 2.7060 3.2892 -7.6293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292606202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:03 Heat of formation + Delta-G solvation = -5.598122 kcal Electronic energy + Delta-G solvation = -21459.791188 eV Core-core repulsion = 17998.594026 eV Total energy + Delta-G solvation = -3461.197162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95972 -38.85823 -37.09717 -36.41026 -33.81206 -32.42632 -31.17806 -30.72269 -29.28105 -26.93831 -25.67511 -25.21007 -22.76340 -21.84840 -20.11035 -18.08881 -17.38690 -16.78910 -16.63249 -16.07044 -15.51930 -15.17965 -14.79948 -14.43702 -14.24889 -14.09778 -13.87217 -13.67782 -13.52831 -13.26061 -12.69130 -12.44050 -12.17615 -11.77323 -11.71972 -11.50356 -11.31793 -11.06016 -11.02234 -10.77779 -10.76754 -10.49948 -9.81920 -9.62245 -9.06830 -8.98244 -8.90033 -8.68702 -8.24830 -6.50102 -6.21568 -3.91966 0.98455 1.19626 2.08097 2.14257 2.88749 3.19135 3.22845 3.29754 3.44615 3.60740 4.19598 4.24341 4.59363 4.69634 4.88186 5.12015 5.13934 5.15001 5.22013 5.25256 5.28505 5.40011 5.42053 5.50973 5.63802 5.71517 5.84648 5.92453 6.12656 6.21436 6.29812 6.38233 6.51195 6.73514 7.55242 7.60697 8.35803 8.37186 9.24104 10.85982 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.003758 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.694781 B = 7448.611510 C = 8198.800334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.132 6.132 3 N -0.478 5.478 4 C 0.161 3.839 5 C -0.100 4.100 6 C -0.069 4.069 7 C -0.121 4.121 8 C -0.103 4.103 9 C -0.122 4.122 10 C -0.015 4.015 11 Cl -0.063 7.063 12 C 0.545 3.455 13 O -0.495 6.495 14 C -0.145 4.145 15 S -0.063 6.063 16 C -0.533 4.533 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 -4.436 20.902 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.136 6.136 3 N -0.259 5.259 4 C 0.040 3.960 5 C -0.102 4.102 6 C -0.088 4.088 7 C -0.139 4.139 8 C -0.122 4.122 9 C -0.141 4.141 10 C -0.042 4.042 11 Cl -0.034 7.034 12 C 0.335 3.665 13 O -0.367 6.367 14 C -0.295 4.295 15 S 0.164 5.836 16 C -0.681 4.681 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.927 -3.018 20.775 21.081 hybrid contribution -1.435 -2.167 -0.933 2.762 sum 0.491 -5.185 19.842 20.514 Atomic orbital electron populations 1.23396 0.82371 1.03635 1.01399 1.90716 1.19429 1.06736 1.96688 1.50231 1.59797 1.10508 1.05414 1.20483 0.91253 0.98386 0.85836 1.19965 0.96870 0.92844 1.00559 1.21168 0.93481 0.98241 0.95918 1.21271 0.95114 0.98399 0.99104 1.21135 0.99835 0.92543 0.98679 1.21001 0.91543 0.99607 1.01901 1.20839 0.92019 0.88639 1.02745 1.98369 1.69746 1.40776 1.94515 1.20519 0.77823 0.84227 0.83923 1.90726 1.39943 1.20869 1.85204 1.23502 1.04375 1.05206 0.96457 1.85287 1.77351 1.27337 0.93620 1.22848 1.44198 1.08840 0.92247 0.90919 1.24975 0.94841 0.95350 0.98313 1.70012 1.39643 1.19052 1.21640 0.86179 0.78682 0.80050 0.80677 1.20275 1.20730 1.19654 0.92503 0.87887 0.93160 0.88767 0.88557 0.84405 0.85291 0.85279 0.85168 0.88717 0.89468 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 11.34 101.05 1.15 1.04 16 2 O -0.13 -1.84 9.81 -11.47 -0.11 -1.95 16 3 N -0.48 -7.31 3.00 -61.48 -0.18 -7.50 16 4 C 0.16 2.04 5.16 -5.20 -0.03 2.02 16 5 C -0.10 -1.33 5.13 -104.59 -0.54 -1.86 16 6 C -0.07 -0.90 8.85 -39.59 -0.35 -1.25 16 7 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 8 C -0.10 -1.07 10.05 -39.59 -0.40 -1.47 16 9 C -0.12 -1.37 9.83 -39.55 -0.39 -1.76 16 10 C -0.02 -0.19 6.31 -39.50 -0.25 -0.44 16 11 Cl -0.06 -0.76 26.53 -51.86 -1.38 -2.13 16 12 C 0.55 10.47 7.62 -10.99 -0.08 10.39 16 13 O -0.49 -10.59 14.57 5.55 0.08 -10.51 16 14 C -0.15 -3.06 5.37 36.00 0.19 -2.87 16 15 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 16 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 20 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.06 0.66 6.89 -51.93 -0.36 0.30 16 25 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 1.13 7.76 -51.93 -0.40 0.73 16 28 H 0.10 1.02 7.47 -51.93 -0.39 0.63 16 29 H 0.14 1.78 7.84 -52.49 -0.41 1.36 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.09 1.99 8.14 -51.91 -0.42 1.56 16 34 H 0.09 1.71 6.90 -51.92 -0.36 1.35 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -33.43 334.85 -7.94 -41.37 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.00 Total: -0.57 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -0.89 Total: -10.91 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.55 Total: -32.90 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.03 Total: -12.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.38 Total: -2.13 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.43 -7.94 -41.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292606202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.769 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds