Wall clock time and date at job start Fri Apr 10 2020 23:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41605 * 114.00122 * 2 1 4 4 C 1.46495 * 119.99577 * 90.00042 * 3 2 1 5 5 C 1.50701 * 109.46926 * 103.75287 * 4 3 2 6 6 C 1.38236 * 120.00934 * 102.78799 * 5 4 3 7 7 C 1.38218 * 120.01752 * 179.97438 * 6 5 4 8 8 C 1.38265 * 120.02495 * 0.03903 * 7 6 5 9 9 C 1.38197 * 120.01147 * 359.97438 * 8 7 6 10 10 C 1.38331 * 120.00748 * 282.50784 * 5 4 3 11 11 Cl 1.73601 * 120.01017 * 359.97438 * 10 5 4 12 12 C 1.34771 * 119.99717 * 270.00145 * 3 2 1 13 13 O 1.21293 * 119.99614 * 184.92720 * 12 3 2 14 14 C 1.50694 * 120.00560 * 4.92861 * 12 3 2 15 15 S 1.81000 * 109.47329 * 179.97438 * 14 12 3 16 16 C 1.76208 * 99.99893 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99552 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00285 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99528 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47196 * 90.00196 * 20 18 16 22 22 H 1.48505 * 109.47039 * 210.00000 * 20 18 16 23 23 H 1.48503 * 109.47215 * 329.99911 * 20 18 16 24 24 H 1.08999 * 109.47308 * 59.99491 * 1 2 3 25 25 H 1.09000 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46769 * 300.00104 * 1 2 3 27 27 H 1.09002 * 109.47025 * 223.74915 * 4 3 2 28 28 H 1.08995 * 109.47796 * 343.75231 * 4 3 2 29 29 H 1.08001 * 119.99299 * 359.97438 * 6 5 4 30 30 H 1.07997 * 119.99162 * 180.02562 * 7 6 5 31 31 H 1.07998 * 119.99772 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.00555 * 180.02562 * 9 8 7 33 33 H 1.09004 * 109.46922 * 299.99981 * 14 12 3 34 34 H 1.08998 * 109.47319 * 59.99810 * 14 12 3 35 35 H 0.97000 * 120.00033 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9627 1.2687 5 6 3.7848 1.8979 1.5349 6 6 4.5756 3.0106 1.3169 7 6 5.9347 2.9516 1.5615 8 6 6.5043 1.7795 2.0234 9 6 5.7148 0.6664 2.2414 10 6 4.3532 0.7268 2.0028 11 17 3.3594 -0.6685 2.2843 12 6 2.2790 1.9092 -1.1672 13 8 2.8535 2.9774 -1.1691 14 6 1.8718 1.2703 -2.4698 15 16 2.3751 2.3327 -3.8462 16 6 1.7929 1.3715 -5.2034 17 1 1.2963 0.4294 -5.0241 18 6 1.9735 1.8247 -6.5028 19 7 2.5801 2.9723 -6.7212 20 14 1.3569 0.8054 -7.9416 21 1 -0.0389 1.1969 -8.2634 22 1 2.2230 1.0436 -9.1242 23 1 1.3966 -0.6347 -7.5811 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9891 3.0050 1.2123 28 1 1.7666 1.4651 2.0767 29 1 4.1314 3.9263 0.9555 30 1 6.5521 3.8213 1.3915 31 1 7.5664 1.7337 2.2140 32 1 6.1598 -0.2490 2.6027 33 1 2.3560 0.2983 -2.5648 34 1 0.7898 1.1406 -2.4883 35 1 2.7060 3.2892 -7.6293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292606202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:00 Heat of formation + Delta-G solvation = -25.147986 kcal Electronic energy + Delta-G solvation = -21460.638934 eV Core-core repulsion = 17998.594026 eV Total energy + Delta-G solvation = -3462.044908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.15188 -39.95666 -38.33391 -37.33033 -34.87526 -34.59252 -32.39601 -31.64222 -30.72291 -27.90948 -27.68459 -26.48357 -23.66512 -22.87070 -21.37194 -19.97441 -18.44435 -18.36594 -17.77279 -17.15681 -16.88813 -16.48005 -16.15839 -15.95624 -15.71593 -15.29513 -15.23727 -14.77628 -14.55178 -14.45787 -14.21429 -13.66651 -13.42297 -13.19171 -12.92177 -12.83469 -12.64742 -12.62830 -12.40871 -12.20059 -11.75517 -11.69957 -11.60292 -11.15029 -11.00993 -10.32091 -10.20890 -9.86557 -9.62321 -8.67714 -8.35783 -6.13659 0.03488 0.28625 0.93140 1.19992 1.31827 1.39559 1.41875 1.49607 1.62663 2.25914 2.69885 2.87538 2.98562 3.39215 3.65822 3.77869 4.03617 4.13801 4.17105 4.25646 4.36831 4.39191 4.43327 4.47890 4.50684 4.54764 4.74224 4.77646 4.96522 5.23322 5.27564 5.40900 5.42381 5.49922 5.86854 6.18877 6.31039 6.93948 7.05779 8.73477 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.003758 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.694781 B = 7448.611510 C = 8198.800334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.141 6.141 3 N -0.467 5.467 4 C 0.161 3.839 5 C -0.118 4.118 6 C -0.088 4.088 7 C -0.128 4.128 8 C -0.099 4.099 9 C -0.127 4.127 10 C -0.029 4.029 11 Cl -0.061 7.061 12 C 0.545 3.455 13 O -0.525 6.525 14 C -0.121 4.121 15 S -0.137 6.137 16 C -0.549 4.549 17 H 0.078 0.922 18 C 0.018 3.982 19 N -0.909 5.909 20 Si 0.996 3.004 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.261 1.261 24 H 0.046 0.954 25 H 0.131 0.869 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 -6.236 21.691 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 O -0.145 6.145 3 N -0.246 5.246 4 C 0.041 3.959 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.146 4.146 8 C -0.117 4.117 9 C -0.145 4.145 10 C -0.056 4.056 11 Cl -0.032 7.032 12 C 0.334 3.666 13 O -0.401 6.401 14 C -0.272 4.272 15 S 0.091 5.909 16 C -0.696 4.696 17 H 0.097 0.903 18 C -0.187 4.187 19 N -0.545 5.545 20 Si 0.818 3.182 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.185 1.185 24 H 0.065 0.935 25 H 0.149 0.851 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.147 0.853 30 H 0.165 0.835 31 H 0.178 0.822 32 H 0.168 0.832 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.588 -4.842 21.612 22.204 hybrid contribution -1.339 -1.655 -1.030 2.366 sum 0.249 -6.497 20.582 21.584 Atomic orbital electron populations 1.23649 0.80306 1.05556 1.01842 1.90704 1.21555 1.05468 1.96761 1.49990 1.58865 1.10722 1.05023 1.20684 0.91737 0.98592 0.84841 1.20024 0.96992 0.93360 1.01576 1.21263 0.94523 0.98119 0.96767 1.21574 0.94682 0.99645 0.98663 1.21516 1.01326 0.91681 0.97226 1.21338 0.91120 1.00708 1.01362 1.21018 0.92804 0.88570 1.03238 1.98361 1.69815 1.40506 1.94516 1.20104 0.78052 0.84033 0.84418 1.90715 1.41408 1.22121 1.85845 1.23297 1.05130 1.03585 0.95173 1.85372 1.78329 1.30399 0.96848 1.23172 1.44446 1.09095 0.92930 0.90341 1.26066 0.94691 0.96525 1.01439 1.70161 1.40886 1.20961 1.22537 0.84993 0.78356 0.78471 0.76420 1.19114 1.20106 1.18491 0.93535 0.85146 0.91215 0.88481 0.86315 0.85344 0.83497 0.82200 0.83234 0.88600 0.87918 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.31 11.34 113.37 1.29 0.98 16 2 O -0.14 -3.70 9.81 -38.80 -0.38 -4.08 16 3 N -0.47 -13.89 3.00 -466.80 -1.40 -15.29 16 4 C 0.16 3.96 5.16 85.63 0.44 4.40 16 5 C -0.12 -3.05 5.13 -19.84 -0.10 -3.15 16 6 C -0.09 -2.28 8.85 22.26 0.20 -2.08 16 7 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 8 C -0.10 -1.86 10.05 22.27 0.22 -1.63 16 9 C -0.13 -2.61 9.83 22.29 0.22 -2.39 16 10 C -0.03 -0.70 6.31 22.32 0.14 -0.56 16 11 Cl -0.06 -1.37 26.53 -2.72 -0.07 -1.44 16 12 C 0.55 21.05 7.62 87.66 0.67 21.71 16 13 O -0.53 -23.09 14.57 -3.07 -0.04 -23.14 16 14 C -0.12 -5.13 5.37 71.23 0.38 -4.75 16 15 S -0.14 -7.62 20.57 -56.49 -1.16 -8.78 16 16 C -0.55 -31.72 9.50 67.95 0.65 -31.07 16 17 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 18 C 0.02 1.02 5.49 84.86 0.47 1.49 16 19 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 20 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 24 H 0.05 0.99 6.89 -2.39 -0.02 0.98 16 25 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 2.32 7.76 -2.39 -0.02 2.30 16 28 H 0.12 2.32 7.47 -2.39 -0.02 2.30 16 29 H 0.13 3.46 7.84 -2.91 -0.02 3.44 16 30 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 34 H 0.10 3.99 6.90 -2.40 -0.02 3.97 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -73.20 334.85 5.15 -68.05 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.11 Total: 13.78 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 4.79 Total: -19.58 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.11 Total: -70.62 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.43 Total: -27.22 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.16 Total: -8.78 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.44 kcal Total: -73.20 5.15 -68.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292606202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.901 kcal (2) G-P(sol) polarization free energy of solvation -73.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds