Wall clock time and date at job start Fri Apr 10 2020 23:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47234 * 2 1 4 4 C 1.46500 * 119.99999 * 274.91814 * 3 2 1 5 5 C 1.50704 * 109.46869 * 263.61050 * 4 3 2 6 6 H 1.07999 * 119.99903 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99731 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00554 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99990 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46768 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47292 * 119.99808 * 9 7 5 12 12 H 1.48500 * 109.47035 * 239.99908 * 9 7 5 13 13 C 1.34783 * 120.00237 * 94.91019 * 3 2 1 14 14 O 1.21573 * 119.99634 * 4.31276 * 13 3 2 15 15 C 1.47673 * 120.00470 * 184.30197 * 13 3 2 16 16 N 1.31815 * 126.45895 * 354.52906 * 15 13 3 17 17 N 1.28475 * 110.13125 * 180.23520 * 16 15 13 18 18 C 1.46491 * 124.93539 * 179.75235 * 17 16 15 19 19 C 1.35614 * 110.12806 * 359.74335 * 17 16 15 20 20 C 1.35439 * 107.13842 * 0.02562 * 19 17 16 21 21 Br 1.89102 * 127.23942 * 179.97438 * 20 19 17 22 22 H 1.08995 * 109.46978 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47119 * 300.00022 * 1 2 3 24 24 H 1.09001 * 109.46806 * 60.00204 * 1 2 3 25 25 H 1.08994 * 109.47244 * 239.99608 * 2 1 3 26 26 H 1.09001 * 109.46806 * 119.99796 * 2 1 3 27 27 H 1.08998 * 109.47365 * 23.61280 * 4 3 2 28 28 H 1.09000 * 109.47168 * 143.61514 * 4 3 2 29 29 H 0.96997 * 120.00437 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.47201 * 269.99473 * 18 17 16 31 31 H 1.09001 * 109.47967 * 29.99194 * 18 17 16 32 32 H 1.09002 * 109.47519 * 149.99566 * 18 17 16 33 33 H 1.08000 * 126.43102 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1600 2.1080 -1.2641 5 6 3.5870 2.0151 -1.7397 6 1 4.3156 1.4696 -1.1584 7 6 3.9626 2.6274 -2.9165 8 7 3.0757 3.2930 -3.6238 9 14 5.7312 2.5117 -3.5066 10 1 6.5248 1.7135 -2.5380 11 1 5.7670 1.8541 -4.8375 12 1 6.3078 3.8760 -3.6129 13 6 2.3373 1.9833 1.1629 14 8 2.2947 1.3563 2.2037 15 6 2.7385 3.4044 1.1730 16 7 2.9252 4.1731 0.1186 17 7 3.2739 5.3532 0.4879 18 6 3.5683 6.4639 -0.4208 19 6 3.3297 5.4213 1.8412 20 6 2.9921 4.1988 2.3166 21 35 2.8879 3.6639 4.1274 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.4986 1.6697 -2.0114 28 1 1.8948 3.1544 -1.1132 29 1 3.3399 3.7235 -4.4519 30 1 4.6288 6.4560 -0.6727 31 1 2.9780 6.3553 -1.3307 32 1 3.3172 7.4070 0.0647 33 1 3.5938 6.2877 2.4294 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292683319.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:05 Heat of formation + Delta-G solvation = 42.577632 kcal Electronic energy + Delta-G solvation = -19219.835753 eV Core-core repulsion = 16135.839843 eV Total energy + Delta-G solvation = -3083.995910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.53534 -40.38796 -36.88409 -34.70822 -34.44275 -32.92245 -31.76703 -30.38238 -28.93578 -28.09743 -24.96131 -24.78168 -22.58143 -22.16597 -20.12240 -18.66260 -18.04992 -17.51870 -17.16742 -16.90836 -16.26368 -15.77755 -15.04992 -14.70289 -14.40119 -14.34726 -14.20870 -13.72864 -13.52112 -13.36982 -13.26211 -13.08200 -12.73368 -12.66590 -12.17917 -12.03580 -11.82059 -11.64707 -11.50952 -11.22478 -10.59842 -10.38154 -10.15192 -9.71262 -9.35026 -8.08217 -6.16429 0.69392 0.70224 0.96830 1.35243 1.39928 1.49783 1.79829 2.33468 2.46424 2.52527 3.22297 3.55725 3.78540 3.97571 4.23890 4.41293 4.41698 4.47301 4.53292 4.57115 4.75370 4.85283 4.94145 5.04940 5.12560 5.28938 5.46806 5.73937 5.90314 6.01347 6.23180 6.56417 6.83868 7.03394 7.36294 7.50488 8.98609 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.006599 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.235352 B = 4241.860641 C = 5446.204213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.515 4.515 6 H 0.031 0.969 7 C 0.035 3.965 8 N -0.912 5.912 9 Si 0.939 3.061 10 H -0.284 1.284 11 H -0.278 1.278 12 H -0.273 1.273 13 C 0.585 3.415 14 O -0.568 6.568 15 C -0.024 4.024 16 N -0.215 5.215 17 N -0.286 5.286 18 C 0.082 3.918 19 C 0.032 3.968 20 C -0.189 4.189 21 Br 0.002 6.998 22 H 0.091 0.909 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.012 0.988 28 H 0.061 0.939 29 H 0.263 0.737 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 8.097 10.199 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.322 5.322 4 C 0.126 3.874 5 C -0.554 4.554 6 H 0.049 0.951 7 C -0.165 4.165 8 N -0.552 5.552 9 Si 0.766 3.234 10 H -0.210 1.210 11 H -0.204 1.204 12 H -0.199 1.199 13 C 0.372 3.628 14 O -0.447 6.447 15 C -0.185 4.185 16 N -0.051 5.051 17 N -0.075 5.075 18 C -0.056 4.056 19 C -0.113 4.113 20 C -0.280 4.280 21 Br 0.086 6.914 22 H 0.110 0.890 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.956 7.776 9.915 12.637 hybrid contribution 1.052 -0.109 -0.308 1.101 sum 0.096 7.667 9.607 12.292 Atomic orbital electron populations 1.22011 0.94436 1.03180 1.01236 1.21484 0.95374 0.82133 1.02592 1.48221 1.62027 1.14421 1.07523 1.19443 0.95658 0.93323 0.78964 1.21360 0.95186 1.32459 1.06406 0.95060 1.25303 0.99954 0.94822 0.96372 1.70012 1.34713 1.35086 1.15385 0.85812 0.81643 0.77995 0.77942 1.20978 1.20403 1.19878 1.17205 0.77141 0.84771 0.83662 1.90684 1.56540 1.65210 1.32305 1.21866 1.10652 0.96010 0.89982 1.74556 1.13906 0.92120 1.24505 1.46374 1.45521 1.09272 1.06302 1.22541 1.03908 0.85454 0.93708 1.23374 1.03955 0.99449 0.84509 1.22098 1.16899 0.96444 0.92509 1.96520 1.97915 1.92352 1.04629 0.89001 0.93665 0.93115 0.90601 0.90678 0.96950 0.92206 0.92729 0.88989 0.89598 0.83964 0.74860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.24 71.98 0.74 -4.18 16 2 C 0.11 4.18 6.18 86.38 0.53 4.72 16 3 N -0.59 -27.65 2.47 -829.76 -2.05 -29.71 16 4 C 0.25 12.66 4.79 85.63 0.41 13.07 16 5 C -0.52 -28.21 8.49 25.60 0.22 -28.00 16 6 H 0.03 1.82 7.81 -2.91 -0.02 1.79 16 7 C 0.04 1.88 5.46 84.65 0.46 2.35 16 8 N -0.91 -49.72 13.29 21.45 0.28 -49.44 16 9 Si 0.94 42.78 29.54 68.60 2.03 44.81 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 13 C 0.59 27.80 7.62 86.73 0.66 28.46 16 14 O -0.57 -27.46 15.11 -3.95 -0.06 -27.52 16 15 C -0.02 -1.06 6.81 42.45 0.29 -0.77 16 16 N -0.22 -9.25 7.83 -48.18 -0.38 -9.63 16 17 N -0.29 -9.11 3.71 -368.92 -1.37 -10.48 16 18 C 0.08 1.77 11.32 127.77 1.45 3.22 16 19 C 0.03 0.89 11.48 83.46 0.96 1.84 16 20 C -0.19 -6.77 6.68 22.43 0.15 -6.62 16 21 Br 0.00 0.08 32.72 -20.37 -0.67 -0.59 16 22 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 26 H 0.07 2.94 7.23 -2.39 -0.02 2.92 16 27 H 0.01 0.67 8.02 -2.39 -0.02 0.65 16 28 H 0.06 3.21 5.31 -2.39 -0.01 3.20 16 29 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 30 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.14 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.24 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -69.78 306.73 4.77 -65.01 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.12 Total: 3.45 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 5.86 Total: 14.09 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -3.52 Total: -99.25 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.06 Total: -27.52 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -0.67 Total: -0.59 kcal Total: -69.78 4.77 -65.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292683319.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.589 kcal (2) G-P(sol) polarization free energy of solvation -69.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds