Wall clock time and date at job start Fri Apr 10 2020 23:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00084 * 2 1 4 4 N 1.46503 * 109.47208 * 125.63329 * 3 2 1 5 5 C 1.46506 * 119.99589 * 87.94863 * 4 3 2 6 6 C 1.50696 * 109.46738 * 67.63630 * 5 4 3 7 7 H 1.08004 * 120.00066 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00032 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00260 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99847 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47157 * 90.00135 * 10 8 6 12 12 H 1.48504 * 109.47179 * 209.99739 * 10 8 6 13 13 H 1.48493 * 109.47207 * 329.99915 * 10 8 6 14 14 S 1.65599 * 120.00219 * 267.95707 * 4 3 2 15 15 O 1.42096 * 106.40450 * 30.75291 * 14 4 3 16 16 O 1.42097 * 106.40061 * 163.67334 * 14 4 3 17 17 C 1.76200 * 107.21699 * 277.21016 * 14 4 3 18 18 C 1.38234 * 120.00580 * 114.14277 * 17 14 4 19 19 C 1.38224 * 120.01477 * 179.97438 * 18 17 14 20 20 C 1.38261 * 120.02379 * 0.03974 * 19 18 17 21 21 C 1.38195 * 120.01636 * 359.97438 * 20 19 18 22 22 C 1.38330 * 120.00960 * 293.87592 * 17 14 4 23 23 Cl 1.73604 * 120.01024 * 359.96786 * 22 17 14 24 24 H 1.07998 * 119.99976 * 5.11719 * 1 2 3 25 25 H 1.07992 * 120.00095 * 185.11142 * 1 2 3 26 26 H 1.07998 * 119.99783 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47195 * 5.63831 * 3 2 1 28 28 H 1.08998 * 109.47236 * 245.63405 * 3 2 1 29 29 H 1.09001 * 109.46609 * 187.62900 * 5 4 3 30 30 H 1.08994 * 109.47502 * 307.63539 * 5 4 3 31 31 H 0.96996 * 120.00094 * 180.02562 * 9 8 6 32 32 H 1.08003 * 119.99213 * 0.02562 * 18 17 14 33 33 H 1.07997 * 119.98993 * 180.02562 * 19 18 17 34 34 H 1.08003 * 119.99156 * 179.97438 * 20 19 18 35 35 H 1.08000 * 120.01149 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0046 1.3257 1.1226 5 6 4.3539 0.7792 0.9574 6 6 5.1341 1.6472 0.0041 7 1 4.6711 2.5185 -0.4351 8 6 6.4390 1.3290 -0.3073 9 7 7.1201 2.0868 -1.1389 10 14 7.2399 -0.1776 0.4529 11 1 7.0058 -1.3562 -0.4197 12 1 8.7003 0.0543 0.5902 13 1 6.6505 -0.4287 1.7925 14 16 2.5433 1.9664 2.5782 15 8 1.1454 1.7382 2.6922 16 8 3.4865 1.5063 3.5362 17 6 2.7552 3.7123 2.4702 18 6 1.6541 4.5467 2.5188 19 6 1.8202 5.9163 2.4346 20 6 3.0875 6.4526 2.3009 21 6 4.1890 5.6195 2.2519 22 6 4.0238 4.2487 2.3423 23 17 5.4078 3.2019 2.2891 24 1 -0.5400 0.9316 -0.0834 25 1 -0.5400 -0.9315 0.0833 26 1 1.8500 -0.9353 0.0004 27 1 1.3595 2.1312 0.1010 28 1 2.6124 1.4078 -0.9361 29 1 4.8576 0.7569 1.9238 30 1 4.2896 -0.2328 0.5577 31 1 8.0380 1.8627 -1.3583 32 1 0.6639 4.1283 2.6234 33 1 0.9597 6.5678 2.4730 34 1 3.2166 7.5228 2.2347 35 1 5.1790 6.0385 2.1479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292776381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:08 Heat of formation + Delta-G solvation = -15.652564 kcal Electronic energy + Delta-G solvation = -22889.227897 eV Core-core repulsion = 19427.594741 eV Total energy + Delta-G solvation = -3461.633155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -39.01563 -36.85733 -36.52404 -35.81871 -35.33990 -33.20494 -31.98225 -31.21760 -30.57022 -27.96961 -25.14858 -23.21819 -22.62105 -21.90529 -19.58767 -18.67516 -17.75856 -17.05050 -16.78658 -16.01489 -15.87385 -15.12495 -14.60737 -14.39342 -14.17662 -13.88735 -13.72558 -13.35705 -13.22540 -12.48401 -12.41255 -12.27733 -11.79085 -11.65917 -11.57835 -11.40379 -11.31955 -11.21266 -10.92542 -10.81234 -10.65482 -10.52905 -10.09610 -9.86054 -9.58603 -9.31179 -8.99616 -8.69786 -8.42669 -8.17568 -6.14290 -4.08272 0.74515 1.01638 1.29133 2.55491 2.59720 3.23252 3.31664 3.37942 3.41004 3.67347 4.18843 4.35032 4.65911 4.89496 4.99283 5.17891 5.19726 5.29039 5.40218 5.45262 5.60429 5.71184 5.82884 6.02039 6.10019 6.13929 6.28785 6.31933 6.38940 6.78574 6.83997 6.93705 7.02246 7.16865 7.33043 7.55182 8.42255 8.89186 9.45506 10.97943 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.008464 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.710931 B = 3307.431352 C = 4642.905801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.158 3.842 4 N -0.967 5.967 5 C 0.208 3.792 6 C -0.519 4.519 7 H 0.083 0.917 8 C 0.080 3.920 9 N -0.890 5.890 10 Si 0.847 3.153 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.258 1.258 14 S 2.685 3.315 15 O -0.967 6.967 16 O -0.950 6.950 17 C -0.678 4.678 18 C -0.017 4.017 19 C -0.153 4.153 20 C -0.060 4.060 21 C -0.138 4.138 22 C 0.061 3.939 23 Cl 0.013 6.987 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 5.412 4.721 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.183 4.183 3 C 0.032 3.968 4 N -0.805 5.805 5 C 0.085 3.915 6 C -0.558 4.558 7 H 0.101 0.899 8 C -0.123 4.123 9 N -0.528 5.528 10 Si 0.673 3.327 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.182 1.182 14 S 2.773 3.227 15 O -0.957 6.957 16 O -0.940 6.940 17 C -0.763 4.763 18 C -0.037 4.037 19 C -0.172 4.172 20 C -0.078 4.078 21 C -0.158 4.158 22 C 0.032 3.968 23 Cl 0.044 6.956 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.685 4.904 5.351 12.103 hybrid contribution 0.956 -0.062 -0.177 0.974 sum -8.729 4.842 5.174 11.243 Atomic orbital electron populations 1.23712 0.95782 1.01521 1.01213 1.23400 0.96009 0.99659 0.99239 1.20184 0.90449 0.94158 0.92003 1.57119 1.22754 1.73106 1.27496 1.19808 0.77692 0.94784 0.99192 1.21294 0.96951 1.11842 1.25675 0.89876 1.24713 0.96929 0.95972 0.94727 1.69864 1.10507 1.38132 1.34301 0.87262 0.79562 0.84614 0.81267 1.19756 1.20912 1.18214 1.02199 0.73276 0.73471 0.73729 1.93525 1.31544 1.84473 1.86151 1.93582 1.62950 1.79093 1.58388 1.31139 0.97974 1.28620 1.18536 1.20922 0.97395 0.93484 0.91859 1.21239 0.97599 0.95151 1.03186 1.21366 0.92323 0.99901 0.94213 1.21233 1.00280 0.91623 1.02630 1.20923 0.89613 0.93021 0.93245 1.98593 1.40026 1.62510 1.94506 0.88692 0.88838 0.87173 0.91402 0.88083 0.92611 0.95286 0.92611 0.83783 0.85082 0.84952 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 14.31 29.01 0.42 -2.13 16 2 C -0.16 -2.57 9.82 -36.03 -0.35 -2.92 16 3 C 0.16 2.71 5.64 -5.19 -0.03 2.68 16 4 N -0.97 -19.20 2.83 -116.94 -0.33 -19.53 16 5 C 0.21 4.71 3.72 -5.19 -0.02 4.69 16 6 C -0.52 -12.98 6.30 -34.44 -0.22 -13.20 16 7 H 0.08 2.23 8.05 -52.48 -0.42 1.81 16 8 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.89 -25.08 13.96 55.43 0.77 -24.31 16 10 Si 0.85 20.26 27.47 -169.99 -4.67 15.59 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 14 S 2.68 52.45 5.04 -107.50 -0.54 51.91 16 15 O -0.97 -18.65 16.24 -57.17 -0.93 -19.58 16 16 O -0.95 -20.87 14.80 -57.17 -0.85 -21.72 16 17 C -0.68 -12.07 5.91 -39.55 -0.23 -12.31 16 18 C -0.02 -0.25 9.55 -39.59 -0.38 -0.63 16 19 C -0.15 -1.87 10.05 -39.58 -0.40 -2.27 16 20 C -0.06 -0.74 10.05 -39.59 -0.40 -1.13 16 21 C -0.14 -2.11 9.83 -39.55 -0.39 -2.50 16 22 C 0.06 1.12 6.30 -39.50 -0.25 0.87 16 23 Cl 0.01 0.29 21.23 -51.86 -1.10 -0.82 16 24 H 0.09 1.22 7.86 -52.49 -0.41 0.81 16 25 H 0.09 1.13 8.06 -52.49 -0.42 0.70 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.07 1.04 7.57 -51.93 -0.39 0.64 16 28 H 0.10 1.79 7.59 -51.93 -0.39 1.39 16 29 H 0.06 1.33 4.63 -51.93 -0.24 1.09 16 30 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.14 1.87 7.33 -52.48 -0.38 1.48 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -30.30 318.45 -9.11 -39.41 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -3.92 Total: 1.10 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -2.35 Total: -26.84 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.44 Total: -43.84 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.77 Total: -41.30 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Atomic # 16 Polarization: 52.45 SS G_CDS: -0.54 Total: 51.91 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.10 Total: -0.82 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.30 -9.11 -39.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292776381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.755 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds