Wall clock time and date at job start Fri Apr 10 2020 23:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00084 * 2 1 4 4 N 1.46503 * 109.47208 * 125.63329 * 3 2 1 5 5 C 1.46506 * 119.99589 * 87.94863 * 4 3 2 6 6 C 1.50696 * 109.46738 * 67.63630 * 5 4 3 7 7 H 1.08004 * 120.00066 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00032 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00260 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99847 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47157 * 90.00135 * 10 8 6 12 12 H 1.48504 * 109.47179 * 209.99739 * 10 8 6 13 13 H 1.48493 * 109.47207 * 329.99915 * 10 8 6 14 14 S 1.65599 * 120.00219 * 267.95707 * 4 3 2 15 15 O 1.42096 * 106.40450 * 30.75291 * 14 4 3 16 16 O 1.42097 * 106.40061 * 163.67334 * 14 4 3 17 17 C 1.76200 * 107.21699 * 277.21016 * 14 4 3 18 18 C 1.38234 * 120.00580 * 114.14277 * 17 14 4 19 19 C 1.38224 * 120.01477 * 179.97438 * 18 17 14 20 20 C 1.38261 * 120.02379 * 0.03974 * 19 18 17 21 21 C 1.38195 * 120.01636 * 359.97438 * 20 19 18 22 22 C 1.38330 * 120.00960 * 293.87592 * 17 14 4 23 23 Cl 1.73604 * 120.01024 * 359.96786 * 22 17 14 24 24 H 1.07998 * 119.99976 * 5.11719 * 1 2 3 25 25 H 1.07992 * 120.00095 * 185.11142 * 1 2 3 26 26 H 1.07998 * 119.99783 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47195 * 5.63831 * 3 2 1 28 28 H 1.08998 * 109.47236 * 245.63405 * 3 2 1 29 29 H 1.09001 * 109.46609 * 187.62900 * 5 4 3 30 30 H 1.08994 * 109.47502 * 307.63539 * 5 4 3 31 31 H 0.96996 * 120.00094 * 180.02562 * 9 8 6 32 32 H 1.08003 * 119.99213 * 0.02562 * 18 17 14 33 33 H 1.07997 * 119.98993 * 180.02562 * 19 18 17 34 34 H 1.08003 * 119.99156 * 179.97438 * 20 19 18 35 35 H 1.08000 * 120.01149 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0046 1.3257 1.1226 5 6 4.3539 0.7792 0.9574 6 6 5.1341 1.6472 0.0041 7 1 4.6711 2.5185 -0.4351 8 6 6.4390 1.3290 -0.3073 9 7 7.1201 2.0868 -1.1389 10 14 7.2399 -0.1776 0.4529 11 1 7.0058 -1.3562 -0.4197 12 1 8.7003 0.0543 0.5902 13 1 6.6505 -0.4287 1.7925 14 16 2.5433 1.9664 2.5782 15 8 1.1454 1.7382 2.6922 16 8 3.4865 1.5063 3.5362 17 6 2.7552 3.7123 2.4702 18 6 1.6541 4.5467 2.5188 19 6 1.8202 5.9163 2.4346 20 6 3.0875 6.4526 2.3009 21 6 4.1890 5.6195 2.2519 22 6 4.0238 4.2487 2.3423 23 17 5.4078 3.2019 2.2891 24 1 -0.5400 0.9316 -0.0834 25 1 -0.5400 -0.9315 0.0833 26 1 1.8500 -0.9353 0.0004 27 1 1.3595 2.1312 0.1010 28 1 2.6124 1.4078 -0.9361 29 1 4.8576 0.7569 1.9238 30 1 4.2896 -0.2328 0.5577 31 1 8.0380 1.8627 -1.3583 32 1 0.6639 4.1283 2.6234 33 1 0.9597 6.5678 2.4730 34 1 3.2166 7.5228 2.2347 35 1 5.1790 6.0385 2.1479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292776381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:08 Heat of formation + Delta-G solvation = -35.188975 kcal Electronic energy + Delta-G solvation = -22890.075059 eV Core-core repulsion = 19427.594741 eV Total energy + Delta-G solvation = -3462.480318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17826 -38.39713 -38.03178 -37.27242 -36.90701 -34.89499 -33.63091 -32.37963 -31.73168 -29.74275 -26.62940 -24.44781 -23.78756 -23.66365 -20.84771 -20.07643 -19.23099 -18.73179 -18.47808 -17.39225 -17.23361 -16.55020 -16.07875 -15.68432 -15.58576 -15.49332 -14.91639 -14.65296 -14.56762 -14.41061 -14.07188 -13.44832 -13.43021 -13.20177 -13.14912 -12.86140 -12.77577 -12.57434 -12.48376 -12.32954 -12.11821 -12.02677 -11.83255 -11.56364 -11.37322 -10.67553 -10.49088 -10.18029 -9.81501 -9.73132 -8.19764 -6.13776 -0.63763 -0.28080 0.14122 1.16542 1.32043 1.36440 1.41080 1.45052 2.05557 2.36960 2.42596 2.72837 3.15766 3.29607 3.76894 3.95507 3.96934 4.16791 4.23232 4.26413 4.38835 4.44229 4.74261 4.76032 4.90762 4.95966 5.00253 5.10864 5.13466 5.25252 5.31894 5.52129 5.72476 5.73928 5.78784 6.00710 6.39804 6.82441 7.41614 8.95445 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.008464 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.710931 B = 3307.431352 C = 4642.905801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.192 4.192 3 C 0.154 3.846 4 N -0.973 5.973 5 C 0.215 3.785 6 C -0.493 4.493 7 H 0.058 0.942 8 C 0.037 3.963 9 N -0.931 5.931 10 Si 0.886 3.114 11 H -0.261 1.261 12 H -0.286 1.286 13 H -0.255 1.255 14 S 2.689 3.311 15 O -0.968 6.968 16 O -0.983 6.983 17 C -0.693 4.693 18 C -0.025 4.025 19 C -0.136 4.136 20 C -0.044 4.044 21 C -0.150 4.150 22 C 0.031 3.969 23 Cl -0.032 7.032 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.262 0.738 32 H 0.162 0.838 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.347 7.011 5.148 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.212 4.212 3 C 0.029 3.971 4 N -0.810 5.810 5 C 0.091 3.909 6 C -0.532 4.532 7 H 0.076 0.924 8 C -0.162 4.162 9 N -0.572 5.572 10 Si 0.711 3.289 11 H -0.186 1.186 12 H -0.211 1.211 13 H -0.179 1.179 14 S 2.781 3.219 15 O -0.958 6.958 16 O -0.973 6.973 17 C -0.782 4.782 18 C -0.044 4.044 19 C -0.154 4.154 20 C -0.062 4.062 21 C -0.169 4.169 22 C 0.003 3.997 23 Cl -0.002 7.002 24 H 0.126 0.874 25 H 0.133 0.867 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.180 0.820 33 H 0.197 0.803 34 H 0.197 0.803 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.322 6.455 5.781 15.063 hybrid contribution 1.544 -0.339 -0.273 1.604 sum -10.778 6.116 5.508 13.561 Atomic orbital electron populations 1.24010 0.95071 1.03152 0.97839 1.23314 0.96804 0.98736 1.02325 1.20326 0.90289 0.95933 0.90523 1.57071 1.21905 1.73619 1.28397 1.19537 0.78966 0.94602 0.97817 1.21277 0.96648 1.10672 1.24619 0.92381 1.25210 0.97613 0.98010 0.95319 1.69965 1.10812 1.39969 1.36444 0.86612 0.78664 0.82647 0.80961 1.18608 1.21140 1.17893 1.01780 0.72810 0.74165 0.73114 1.93505 1.31134 1.85063 1.86099 1.93536 1.63822 1.80378 1.59581 1.30805 0.98918 1.27452 1.21012 1.21309 0.97034 0.94647 0.91419 1.21820 0.99194 0.94450 0.99959 1.21931 0.91197 1.01811 0.91285 1.21536 1.02194 0.90617 1.02541 1.21067 0.88441 0.93832 0.96390 1.98561 1.42085 1.64301 1.95233 0.87436 0.86719 0.87539 0.89532 0.89488 0.93731 0.94798 0.92828 0.82047 0.80324 0.80331 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 14.31 67.78 0.97 -3.13 16 2 C -0.19 -5.86 9.82 25.65 0.25 -5.61 16 3 C 0.15 5.26 5.64 85.63 0.48 5.75 16 4 N -0.97 -39.07 2.83 -523.90 -1.48 -40.55 16 5 C 0.22 9.97 3.72 85.63 0.32 10.28 16 6 C -0.49 -25.44 6.30 25.60 0.16 -25.28 16 7 H 0.06 3.25 8.05 -2.91 -0.02 3.23 16 8 C 0.04 2.03 5.47 84.65 0.46 2.50 16 9 N -0.93 -54.11 13.96 21.45 0.30 -53.81 16 10 Si 0.89 42.35 27.47 68.60 1.88 44.24 16 11 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 13 H -0.25 -11.96 6.54 99.48 0.65 -11.31 16 14 S 2.69 105.05 5.04 -56.49 -0.28 104.76 16 15 O -0.97 -36.20 16.24 -128.00 -2.08 -38.28 16 16 O -0.98 -44.30 14.80 -128.00 -1.89 -46.20 16 17 C -0.69 -24.08 5.91 22.29 0.13 -23.95 16 18 C -0.02 -0.65 9.55 22.27 0.21 -0.44 16 19 C -0.14 -2.63 10.05 22.27 0.22 -2.41 16 20 C -0.04 -0.89 10.05 22.26 0.22 -0.67 16 21 C -0.15 -4.31 9.83 22.29 0.22 -4.09 16 22 C 0.03 1.14 6.30 22.32 0.14 1.28 16 23 Cl -0.03 -1.39 21.23 -2.72 -0.06 -1.45 16 24 H 0.11 2.43 7.86 -2.91 -0.02 2.40 16 25 H 0.11 2.40 8.06 -2.91 -0.02 2.38 16 26 H 0.11 3.27 8.06 -2.91 -0.02 3.25 16 27 H 0.09 2.55 7.57 -2.38 -0.02 2.53 16 28 H 0.09 3.16 7.59 -2.39 -0.02 3.14 16 29 H 0.04 2.20 4.63 -2.39 -0.01 2.19 16 30 H 0.03 1.53 7.57 -2.39 -0.02 1.51 16 31 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.16 3.61 7.33 -2.91 -0.02 3.59 16 33 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -68.10 318.45 1.23 -66.87 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.04 Total: 10.18 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 3.80 Total: -45.76 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -1.18 Total: -94.36 kcal Atomic # 8 Polarization: -80.51 SS G_CDS: -3.97 Total: -84.48 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.24 kcal Atomic # 16 Polarization: 105.05 SS G_CDS: -0.28 Total: 104.76 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.06 Total: -1.45 kcal Total: -68.10 1.23 -66.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292776381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.682 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds