Wall clock time and date at job start Fri Apr 10 2020 23:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47386 * 2 1 4 4 C 1.46893 * 111.00401 * 299.61968 * 3 2 1 5 5 C 1.50697 * 109.47431 * 166.10230 * 4 3 2 6 6 H 1.07999 * 120.00207 * 3.66482 * 5 4 3 7 7 C 1.37880 * 120.00121 * 183.67024 * 5 4 3 8 8 N 1.31509 * 120.00175 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99759 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46882 * 90.00344 * 9 7 5 11 11 H 1.48505 * 109.46931 * 209.99976 * 9 7 5 12 12 H 1.48496 * 109.47260 * 330.00350 * 9 7 5 13 13 C 1.46899 * 111.00140 * 175.66195 * 3 2 1 14 14 C 1.50703 * 109.47333 * 293.95511 * 13 3 2 15 15 C 1.38234 * 120.01241 * 260.28082 * 14 13 3 16 16 C 1.38218 * 120.04483 * 180.25344 * 15 14 13 17 17 C 1.38258 * 120.05998 * 359.74229 * 16 15 14 18 18 C 1.38258 * 120.01552 * 359.97438 * 17 16 15 19 19 Br 1.89096 * 120.02086 * 180.02562 * 18 17 16 20 20 C 1.38414 * 120.00714 * 79.99793 * 14 13 3 21 21 F 1.35102 * 120.02816 * 0.02562 * 20 14 13 22 22 H 1.08998 * 109.47499 * 66.99386 * 1 2 3 23 23 H 1.09000 * 109.47277 * 187.00055 * 1 2 3 24 24 H 1.09009 * 109.47104 * 306.98992 * 1 2 3 25 25 H 1.09008 * 109.47047 * 240.00340 * 2 1 3 26 26 H 1.09003 * 109.47324 * 120.00783 * 2 1 3 27 27 H 1.09005 * 109.47021 * 286.10245 * 4 3 2 28 28 H 1.09001 * 109.47281 * 46.09609 * 4 3 2 29 29 H 0.97000 * 120.00007 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47139 * 173.95766 * 13 3 2 31 31 H 1.09000 * 109.47410 * 53.95513 * 13 3 2 32 32 H 1.08005 * 119.97630 * 359.97162 * 15 14 13 33 33 H 1.08006 * 119.97203 * 179.76339 * 16 15 14 34 34 H 1.08007 * 119.99091 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5562 2.1073 -1.1921 5 6 1.7776 3.5856 -1.0015 6 1 2.2722 3.9474 -0.1121 7 6 1.3486 4.4766 -1.9623 8 7 1.5413 5.7668 -1.7957 9 14 0.4935 3.8509 -3.5009 10 1 -0.9707 3.7866 -3.2619 11 1 0.7706 4.7736 -4.6310 12 1 1.0010 2.4954 -3.8326 13 6 3.4844 1.4254 0.1037 14 6 3.9076 0.8955 1.4496 15 6 4.2335 1.7729 2.4668 16 6 4.6268 1.2876 3.6998 17 6 4.6896 -0.0759 3.9194 18 6 4.3586 -0.9557 2.9056 19 35 4.4438 -2.8207 3.2060 20 6 3.9643 -0.4699 1.6692 21 9 3.6410 -1.3283 0.6773 22 1 -0.3634 0.4016 -0.9459 23 1 -0.3634 -1.0200 0.1252 24 1 -0.3634 0.6184 0.8209 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 2.1145 1.7657 -2.0638 28 1 0.4939 1.9154 -1.3431 29 1 1.2398 6.3935 -2.4719 30 1 3.8282 2.4539 -0.0062 31 1 3.9215 0.8102 -0.6827 32 1 4.1853 2.8384 2.2966 33 1 4.8849 1.9743 4.4926 34 1 4.9967 -0.4539 4.8835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294543022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:14 Heat of formation + Delta-G solvation = -6.144156 kcal Electronic energy + Delta-G solvation = -18719.708069 eV Core-core repulsion = 15613.679462 eV Total energy + Delta-G solvation = -3106.028607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.033 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.02833 -39.24586 -37.01147 -32.88563 -32.50742 -31.44986 -29.98876 -29.21509 -27.61326 -24.90731 -22.79732 -22.24270 -21.61204 -19.58503 -17.62029 -17.01010 -16.54020 -16.07178 -15.76134 -14.71479 -14.59368 -14.00682 -13.94592 -13.59087 -13.36075 -13.14866 -12.74528 -12.48070 -12.24135 -12.07523 -11.57477 -11.33570 -11.05127 -10.94624 -10.81042 -10.78031 -10.49953 -10.42030 -10.05663 -9.85419 -9.35063 -8.79534 -8.68893 -8.58158 -7.43308 -6.08463 -4.05396 0.94068 1.09515 1.42860 3.26554 3.34362 3.36860 3.43842 4.10520 4.39804 4.62974 4.81397 4.86571 5.11343 5.15552 5.25047 5.47525 5.57905 5.73961 5.78202 5.85709 6.00090 6.00872 6.20780 6.23402 6.32486 6.44250 6.54124 6.67399 6.73607 6.84027 6.91402 7.57242 7.85186 7.96259 8.61758 8.98605 9.53802 11.04514 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.004013 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.248983 B = 6975.808562 C = 7657.146018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 N -0.519 5.519 4 C 0.158 3.842 5 C -0.509 4.509 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.096 3.904 14 C -0.087 4.087 15 C -0.056 4.056 16 C -0.125 4.125 17 C -0.075 4.075 18 C -0.133 4.133 19 Br -0.043 7.043 20 C 0.126 3.874 21 F -0.123 7.123 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.024 0.976 26 H 0.068 0.932 27 H -0.012 1.012 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.106 0.894 31 H 0.037 0.963 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.157 -15.447 11.702 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 N -0.244 5.244 4 C 0.032 3.968 5 C -0.547 4.547 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.031 4.031 14 C -0.089 4.089 15 C -0.075 4.075 16 C -0.144 4.144 17 C -0.095 4.095 18 C -0.213 4.213 19 Br 0.042 6.958 20 C 0.104 3.896 21 F -0.101 7.101 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.005 0.995 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.055 0.945 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.934 -15.771 12.070 21.035 hybrid contribution -0.299 -0.398 -1.812 1.879 sum 6.636 -16.168 10.258 20.265 Atomic orbital electron populations 1.21818 0.95568 1.00477 1.02644 1.22375 0.95864 0.90705 0.99912 1.62100 1.07271 1.11932 1.43058 1.20267 0.95555 0.94981 0.85977 1.21013 1.38682 0.88279 1.06753 0.90145 1.24871 0.95653 0.94731 0.97907 1.69881 1.47453 1.01313 1.35215 0.86911 0.80538 0.79121 0.83520 1.20096 1.21175 1.19296 1.20983 0.89926 1.02453 0.89780 1.20188 0.99565 0.90241 0.98935 1.21251 0.94080 1.00823 0.91321 1.21231 1.00726 0.94630 0.97812 1.20934 0.98179 0.92755 0.97642 1.21829 1.11560 0.91624 0.96291 1.96696 1.97743 1.04871 1.96488 1.17262 1.00270 0.87530 0.84529 1.91521 1.89494 1.69448 1.59631 0.92613 0.93276 0.91785 0.95820 0.91403 0.99460 0.94846 0.92651 0.87555 0.94541 0.83730 0.84510 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.52 37.15 0.35 -2.15 16 2 C 0.04 0.73 4.34 -3.83 -0.02 0.71 16 3 N -0.52 -10.79 4.50 -237.52 -1.07 -11.86 16 4 C 0.16 3.77 3.64 -4.98 -0.02 3.75 16 5 C -0.51 -13.99 9.04 -34.44 -0.31 -14.30 16 6 H 0.08 2.36 7.56 -52.49 -0.40 1.97 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 9 Si 0.87 21.23 27.40 -169.99 -4.66 16.57 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.35 6.65 56.52 0.38 -5.97 16 13 C 0.10 1.80 4.85 -4.98 -0.02 1.77 16 14 C -0.09 -1.37 5.17 -104.56 -0.54 -1.91 16 15 C -0.06 -0.76 9.67 -39.59 -0.38 -1.14 16 16 C -0.13 -1.37 10.04 -39.58 -0.40 -1.77 16 17 C -0.08 -0.83 9.79 -39.57 -0.39 -1.22 16 18 C -0.13 -1.75 6.23 -39.45 -0.25 -1.99 16 19 Br -0.04 -0.51 33.28 -68.01 -2.26 -2.78 16 20 C 0.13 1.91 5.85 -39.40 -0.23 1.68 16 21 F -0.12 -1.98 13.34 2.25 0.03 -1.95 16 22 H 0.05 0.99 6.51 -51.93 -0.34 0.65 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 25 H 0.02 0.44 8.01 -51.92 -0.42 0.02 16 26 H 0.07 1.19 4.66 -51.93 -0.24 0.95 16 27 H -0.01 -0.30 7.39 -51.93 -0.38 -0.68 16 28 H 0.03 0.80 5.07 -51.93 -0.26 0.54 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.11 2.11 6.74 -51.93 -0.35 1.76 16 31 H 0.04 0.68 7.92 -51.93 -0.41 0.27 16 32 H 0.14 1.89 8.04 -52.48 -0.42 1.47 16 33 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 299.56 15.07 4.51 4.51 Total: -1.00 -29.55 299.56 -9.05 -38.59 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.07 Total: -2.29 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -2.30 Total: -14.68 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.30 Total: -37.99 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.03 Total: -1.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.66 Total: 16.57 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.26 Total: -2.78 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.55 -9.05 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294543022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.449 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds