Wall clock time and date at job start Fri Apr 10 2020 23:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47386 * 2 1 4 4 C 1.46893 * 111.00401 * 299.61968 * 3 2 1 5 5 C 1.50697 * 109.47431 * 166.10230 * 4 3 2 6 6 H 1.07999 * 120.00207 * 3.66482 * 5 4 3 7 7 C 1.37880 * 120.00121 * 183.67024 * 5 4 3 8 8 N 1.31509 * 120.00175 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99759 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46882 * 90.00344 * 9 7 5 11 11 H 1.48505 * 109.46931 * 209.99976 * 9 7 5 12 12 H 1.48496 * 109.47260 * 330.00350 * 9 7 5 13 13 C 1.46899 * 111.00140 * 175.66195 * 3 2 1 14 14 C 1.50703 * 109.47333 * 293.95511 * 13 3 2 15 15 C 1.38234 * 120.01241 * 260.28082 * 14 13 3 16 16 C 1.38218 * 120.04483 * 180.25344 * 15 14 13 17 17 C 1.38258 * 120.05998 * 359.74229 * 16 15 14 18 18 C 1.38258 * 120.01552 * 359.97438 * 17 16 15 19 19 Br 1.89096 * 120.02086 * 180.02562 * 18 17 16 20 20 C 1.38414 * 120.00714 * 79.99793 * 14 13 3 21 21 F 1.35102 * 120.02816 * 0.02562 * 20 14 13 22 22 H 1.08998 * 109.47499 * 66.99386 * 1 2 3 23 23 H 1.09000 * 109.47277 * 187.00055 * 1 2 3 24 24 H 1.09009 * 109.47104 * 306.98992 * 1 2 3 25 25 H 1.09008 * 109.47047 * 240.00340 * 2 1 3 26 26 H 1.09003 * 109.47324 * 120.00783 * 2 1 3 27 27 H 1.09005 * 109.47021 * 286.10245 * 4 3 2 28 28 H 1.09001 * 109.47281 * 46.09609 * 4 3 2 29 29 H 0.97000 * 120.00007 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47139 * 173.95766 * 13 3 2 31 31 H 1.09000 * 109.47410 * 53.95513 * 13 3 2 32 32 H 1.08005 * 119.97630 * 359.97162 * 15 14 13 33 33 H 1.08006 * 119.97203 * 179.76339 * 16 15 14 34 34 H 1.08007 * 119.99091 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5562 2.1073 -1.1921 5 6 1.7776 3.5856 -1.0015 6 1 2.2722 3.9474 -0.1121 7 6 1.3486 4.4766 -1.9623 8 7 1.5413 5.7668 -1.7957 9 14 0.4935 3.8509 -3.5009 10 1 -0.9707 3.7866 -3.2619 11 1 0.7706 4.7736 -4.6310 12 1 1.0010 2.4954 -3.8326 13 6 3.4844 1.4254 0.1037 14 6 3.9076 0.8955 1.4496 15 6 4.2335 1.7729 2.4668 16 6 4.6268 1.2876 3.6998 17 6 4.6896 -0.0759 3.9194 18 6 4.3586 -0.9557 2.9056 19 35 4.4438 -2.8207 3.2060 20 6 3.9643 -0.4699 1.6692 21 9 3.6410 -1.3283 0.6773 22 1 -0.3634 0.4016 -0.9459 23 1 -0.3634 -1.0200 0.1252 24 1 -0.3634 0.6184 0.8209 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 2.1145 1.7657 -2.0638 28 1 0.4939 1.9154 -1.3431 29 1 1.2398 6.3935 -2.4719 30 1 3.8282 2.4539 -0.0062 31 1 3.9215 0.8102 -0.6827 32 1 4.1853 2.8384 2.2966 33 1 4.8849 1.9743 4.4926 34 1 4.9967 -0.4539 4.8835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294543022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:12 Heat of formation + Delta-G solvation = -23.528669 kcal Electronic energy + Delta-G solvation = -18720.461918 eV Core-core repulsion = 15613.679462 eV Total energy + Delta-G solvation = -3106.782456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.033 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -50.20112 -40.36622 -38.53171 -34.76024 -33.86774 -32.55811 -31.57135 -30.25369 -29.30767 -26.36655 -24.38299 -23.45630 -22.89665 -21.18699 -19.06524 -18.70652 -17.66904 -17.43632 -16.95796 -16.44509 -15.94678 -15.62660 -15.25796 -15.07838 -14.63265 -14.47745 -14.32751 -13.79654 -13.74257 -13.46351 -12.99962 -12.86758 -12.60607 -12.29328 -12.28416 -12.07177 -11.96399 -11.85792 -11.55647 -11.43056 -11.34088 -10.75397 -9.88665 -9.72209 -9.09397 -8.27332 -6.29197 -0.08940 0.04912 0.44028 1.34122 1.35502 1.45504 2.34312 2.39696 3.03385 3.05662 3.26357 3.55174 3.81500 4.02564 4.13090 4.18088 4.26364 4.39374 4.56563 4.63938 4.65184 4.82788 4.89663 4.90380 4.97379 5.05142 5.11040 5.21729 5.26533 5.41077 5.55831 5.70802 5.97484 6.27305 6.60716 6.75580 7.33822 8.88694 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.004013 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.248983 B = 6975.808562 C = 7657.146018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 N -0.531 5.531 4 C 0.168 3.832 5 C -0.511 4.511 6 H 0.046 0.954 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.257 1.257 13 C 0.102 3.898 14 C -0.108 4.108 15 C -0.067 4.067 16 C -0.109 4.109 17 C -0.062 4.062 18 C -0.139 4.139 19 Br -0.030 7.030 20 C 0.109 3.891 21 F -0.133 7.133 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.021 0.979 26 H 0.078 0.922 27 H -0.019 1.019 28 H 0.038 0.962 29 H 0.266 0.734 30 H 0.082 0.918 31 H 0.030 0.970 32 H 0.140 0.860 33 H 0.174 0.826 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.050 -17.214 12.887 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 N -0.255 5.255 4 C 0.042 3.958 5 C -0.550 4.550 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.584 5.584 9 Si 0.761 3.239 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.181 1.181 13 C -0.026 4.026 14 C -0.110 4.110 15 C -0.085 4.085 16 C -0.127 4.127 17 C -0.082 4.082 18 C -0.219 4.219 19 Br 0.055 6.945 20 C 0.087 3.913 21 F -0.112 7.112 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.096 0.904 27 H -0.002 1.002 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.158 0.842 33 H 0.192 0.808 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.834 -17.561 13.270 23.047 hybrid contribution -0.174 0.138 -2.032 2.044 sum 6.660 -17.422 11.238 21.776 Atomic orbital electron populations 1.21814 0.94381 1.02220 1.01824 1.22426 0.96821 0.89071 1.00261 1.62036 1.08724 1.13473 1.41286 1.20021 0.95700 0.93048 0.87075 1.21214 1.37790 0.90451 1.05506 0.93573 1.25705 0.96520 0.94782 1.01327 1.70019 1.49045 1.02715 1.36661 0.85865 0.79726 0.78968 0.79333 1.18951 1.20685 1.18122 1.20815 0.88708 1.01080 0.91952 1.19946 1.01908 0.91138 0.98002 1.21360 0.94560 1.00459 0.92167 1.21595 0.98520 0.95356 0.97239 1.21388 0.96105 0.92406 0.98293 1.22030 1.11199 0.92802 0.95892 1.96710 1.97679 1.03821 1.96277 1.17358 1.01598 0.87061 0.85259 1.91482 1.89793 1.69634 1.60276 0.93497 0.90253 0.92482 0.96046 0.90383 1.00154 0.94432 0.92453 0.89974 0.95175 0.84199 0.80826 0.81121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.52 71.98 0.69 -4.03 16 2 C 0.04 1.51 4.34 86.30 0.37 1.88 16 3 N -0.53 -22.42 4.50 -905.39 -4.08 -26.50 16 4 C 0.17 8.13 3.64 85.56 0.31 8.45 16 5 C -0.51 -29.00 9.04 25.60 0.23 -28.77 16 6 H 0.05 2.86 7.56 -2.91 -0.02 2.84 16 7 C 0.01 0.83 5.47 84.66 0.46 1.29 16 8 N -0.94 -57.91 13.96 21.45 0.30 -57.61 16 9 Si 0.94 43.91 27.40 68.60 1.88 45.79 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.50 6.65 99.48 0.66 -10.84 16 13 C 0.10 3.96 4.85 85.56 0.41 4.37 16 14 C -0.11 -3.42 5.17 -19.82 -0.10 -3.52 16 15 C -0.07 -1.76 9.67 22.26 0.22 -1.55 16 16 C -0.11 -2.05 10.04 22.27 0.22 -1.83 16 17 C -0.06 -1.16 9.79 22.28 0.22 -0.94 16 18 C -0.14 -3.35 6.23 22.35 0.14 -3.21 16 19 Br -0.03 -0.65 33.28 -20.37 -0.68 -1.32 16 20 C 0.11 3.22 5.85 22.39 0.13 3.35 16 21 F -0.13 -4.24 13.34 44.97 0.60 -3.64 16 22 H 0.05 1.59 6.51 -2.39 -0.02 1.58 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.02 0.78 8.01 -2.38 -0.02 0.76 16 26 H 0.08 2.68 4.66 -2.39 -0.01 2.67 16 27 H -0.02 -0.95 7.39 -2.38 -0.02 -0.96 16 28 H 0.04 1.79 5.07 -2.39 -0.01 1.78 16 29 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.08 3.50 6.74 -2.39 -0.02 3.48 16 31 H 0.03 1.17 7.92 -2.39 -0.02 1.15 16 32 H 0.14 3.75 8.04 -2.91 -0.02 3.73 16 33 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -64.87 299.56 2.39 -62.47 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.06 Total: 5.32 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 3.31 Total: -24.52 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -3.78 Total: -84.11 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.60 Total: -3.64 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -0.68 Total: -1.32 kcal Total: -64.87 2.39 -62.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294543022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.945 kcal (2) G-P(sol) polarization free energy of solvation -64.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds