Wall clock time and date at job start Fri Apr 10 2020 23:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 110.54159 * 2 1 4 4 O 1.42100 * 110.54087 * 223.24757 * 2 1 3 5 5 C 1.76196 * 104.44797 * 111.62839 * 2 1 3 6 6 C 1.33847 * 122.44711 * 90.02272 * 5 2 1 7 7 S 1.70620 * 110.96833 * 180.02562 * 6 5 2 8 8 C 1.75827 * 91.56867 * 0.02562 * 7 6 5 9 9 C 1.46464 * 125.46398 * 179.97438 * 8 7 6 10 10 O 1.21736 * 120.00109 * 173.48586 * 9 8 7 11 11 N 1.34778 * 119.99680 * 353.48696 * 9 8 7 12 12 C 1.36885 * 119.99850 * 173.36422 * 11 9 8 13 13 H 1.07996 * 120.00111 * 226.65513 * 12 11 9 14 14 C 1.39006 * 120.00022 * 46.65341 * 12 11 9 15 15 N 1.31398 * 119.99960 * 18.76698 * 14 12 11 16 16 Si 1.86807 * 119.99865 * 198.76689 * 14 12 11 17 17 H 1.48500 * 109.46769 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.46673 * 299.99590 * 16 14 12 19 19 H 1.48495 * 109.47056 * 60.00207 * 16 14 12 20 20 C 1.46503 * 120.00150 * 353.36430 * 11 9 8 21 21 C 1.53000 * 117.49596 * 182.04989 * 20 11 9 22 22 C 1.53003 * 117.49782 * 113.39268 * 20 11 9 23 23 C 1.36771 * 109.07701 * 0.23122 * 8 7 6 24 24 H 1.09000 * 109.46927 * 308.37578 * 1 2 3 25 25 H 1.09008 * 109.47084 * 68.37196 * 1 2 3 26 26 H 1.08995 * 109.47559 * 188.37053 * 1 2 3 27 27 H 1.07998 * 124.51584 * 359.96424 * 6 5 2 28 28 H 0.96997 * 119.99862 * 174.96729 * 15 14 12 29 29 H 1.08997 * 115.54762 * 327.72238 * 20 11 9 30 30 H 1.08993 * 117.50058 * 0.02562 * 21 20 11 31 31 H 1.09004 * 117.49372 * 145.02333 * 21 20 11 32 32 H 1.09001 * 117.49465 * 214.97846 * 22 20 11 33 33 H 1.08998 * 117.50006 * 0.02562 * 22 20 11 34 34 H 1.08003 * 123.36298 * 179.75295 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6289 1.5861 6 6 2.4333 -1.9352 1.8161 7 16 2.8496 -2.2164 3.4467 8 6 2.7724 -0.4985 3.8131 9 6 3.0272 0.1031 5.1239 10 8 3.0627 1.3143 5.2413 11 7 3.2225 -0.6843 6.2002 12 6 3.5943 -0.1300 7.3953 13 1 4.4022 -0.5655 7.9644 14 6 2.9319 0.9935 7.8764 15 7 1.7455 1.3078 7.4072 16 14 3.7286 2.0563 9.1899 17 1 2.8244 3.1843 9.5295 18 1 3.9771 1.2388 10.4045 19 1 5.0171 2.5903 8.6803 20 6 3.0368 -2.1334 6.0911 21 6 3.2267 -2.9674 7.3596 22 6 4.2755 -3.0180 6.2459 23 6 2.4306 0.1855 2.6791 24 1 -0.3633 0.6380 0.8056 25 1 -0.3634 0.3788 -0.9554 26 1 -0.3634 -1.0166 0.1496 27 1 2.3276 -2.7082 1.0694 28 1 1.2518 2.0481 7.7933 29 1 2.2719 -2.4575 5.3854 30 1 3.4893 -2.4379 8.2754 31 1 2.5869 -3.8405 7.4883 32 1 4.3253 -3.9243 5.6423 33 1 5.2285 -2.5218 6.4294 34 1 2.3145 1.2588 2.6451 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331420469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:28 Heat of formation + Delta-G solvation = -18.327951 kcal Electronic energy + Delta-G solvation = -22015.545894 eV Core-core repulsion = 18555.840432 eV Total energy + Delta-G solvation = -3459.705462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.043 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -38.87803 -37.52002 -37.00267 -36.00391 -35.82078 -33.01786 -31.23787 -29.69361 -29.35538 -25.78858 -24.49109 -22.11753 -21.69846 -21.21499 -18.96304 -18.40914 -18.16585 -16.60659 -16.38174 -16.16680 -15.92939 -15.24191 -14.94237 -14.54159 -14.00648 -13.71925 -13.40614 -13.29192 -13.19088 -13.06227 -12.66309 -12.52196 -12.03153 -11.91995 -11.85148 -11.30089 -11.26733 -11.12812 -11.01576 -10.97475 -10.86843 -10.52381 -10.32575 -10.19890 -9.75403 -8.89193 -8.62003 -8.42109 -8.31305 -7.24130 -6.27614 -4.05257 0.10260 0.81379 1.83639 2.17553 2.30963 3.04709 3.22734 3.30596 3.33890 3.94131 4.07559 4.18296 4.19418 4.61569 4.68502 4.69466 4.88752 5.05190 5.11811 5.31616 5.42947 5.53784 5.54423 5.63866 5.82288 6.05394 6.07864 6.17583 6.36614 6.52460 6.62050 6.75001 7.45022 8.09612 8.82067 8.92935 9.40953 10.03129 10.79516 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.004699 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.272362 B = 5956.792366 C = 7007.852513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.517 3.483 3 O -0.936 6.936 4 O -0.946 6.946 5 C -0.666 4.666 6 C -0.191 4.191 7 S 0.258 5.742 8 C -0.214 4.214 9 C 0.535 3.465 10 O -0.514 6.514 11 N -0.411 5.411 12 C -0.348 4.348 13 H 0.084 0.916 14 C 0.074 3.926 15 N -0.820 5.820 16 Si 0.918 3.082 17 H -0.284 1.284 18 H -0.276 1.276 19 H -0.271 1.271 20 C 0.047 3.953 21 C -0.157 4.157 22 C -0.200 4.200 23 C -0.040 4.040 24 H 0.134 0.866 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.173 0.827 28 H 0.269 0.731 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 -9.492 -9.161 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.695 3.305 3 O -0.933 6.933 4 O -0.943 6.943 5 C -0.768 4.768 6 C -0.331 4.331 7 S 0.526 5.474 8 C -0.336 4.336 9 C 0.323 3.677 10 O -0.392 6.392 11 N -0.130 5.130 12 C -0.475 4.475 13 H 0.102 0.898 14 C -0.138 4.138 15 N -0.452 5.452 16 Si 0.744 3.256 17 H -0.210 1.210 18 H -0.201 1.201 19 H -0.197 1.197 20 C -0.061 4.061 21 C -0.195 4.195 22 C -0.240 4.240 23 C -0.069 4.069 24 H 0.153 0.847 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.191 0.809 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.701 -9.693 -8.947 13.465 hybrid contribution -0.709 1.339 0.365 1.558 sum -3.410 -8.354 -8.581 12.452 Atomic orbital electron populations 1.30224 1.26240 1.11949 1.11630 1.04640 0.77541 0.74441 0.73838 1.93585 1.77155 1.36499 1.86089 1.93546 1.77534 1.62028 1.61239 1.29120 1.23223 1.01618 1.22816 1.25687 1.02823 0.98951 1.05610 1.83593 1.60382 1.06501 0.96876 1.25607 1.11554 0.95669 1.00747 1.16619 0.83420 0.86821 0.80887 1.90705 1.52138 1.12890 1.83479 1.42617 1.60559 1.01440 1.08422 1.18883 1.17114 1.12690 0.98805 0.89805 1.25369 0.94068 0.97725 0.96675 1.69821 1.10072 1.26815 1.38472 0.86185 0.79684 0.79726 0.79975 1.20968 1.20142 1.19652 1.21987 0.98630 0.84219 1.01286 1.23075 1.01509 1.00599 0.94331 1.23414 0.95460 1.01604 1.03481 1.20168 0.97015 1.00954 0.88792 0.84731 0.85369 0.85197 0.80921 0.92100 0.87529 0.86963 0.89259 0.89093 0.88501 0.82213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.18 10.80 101.05 1.09 -4.09 16 2 S 2.52 31.51 5.85 -107.50 -0.63 30.88 16 3 O -0.94 -15.30 17.48 -57.54 -1.01 -16.31 16 4 O -0.95 -13.68 17.46 -57.54 -1.00 -14.69 16 5 C -0.67 -10.12 5.55 -41.41 -0.23 -10.34 16 6 C -0.19 -2.63 10.34 29.19 0.30 -2.33 16 7 S 0.26 3.92 17.88 -107.50 -1.92 2.00 16 8 C -0.21 -4.44 6.26 -36.80 -0.23 -4.67 16 9 C 0.54 13.76 7.05 -12.95 -0.09 13.67 16 10 O -0.51 -15.28 14.51 5.16 0.07 -15.20 16 11 N -0.41 -10.03 2.80 -109.27 -0.31 -10.34 16 12 C -0.35 -9.10 7.88 -15.01 -0.12 -9.22 16 13 H 0.08 2.08 7.33 -52.49 -0.38 1.70 16 14 C 0.07 2.02 4.37 -17.45 -0.08 1.94 16 15 N -0.82 -23.57 11.79 55.50 0.65 -22.91 16 16 Si 0.92 21.13 29.60 -169.99 -5.03 16.10 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.05 0.89 4.47 -67.93 -0.30 0.59 16 21 C -0.16 -2.59 9.81 -26.69 -0.26 -2.86 16 22 C -0.20 -3.12 9.99 -26.69 -0.27 -3.39 16 23 C -0.04 -0.76 9.48 -40.40 -0.38 -1.14 16 24 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 25 H 0.13 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.17 1.82 7.93 -52.49 -0.42 1.40 16 28 H 0.27 7.37 8.32 -40.82 -0.34 7.03 16 29 H 0.11 1.86 5.07 -26.28 -0.13 1.73 16 30 H 0.11 2.04 6.75 -51.93 -0.35 1.69 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.16 3.13 7.94 -52.48 -0.42 2.71 16 LS Contribution 316.86 15.07 4.77 4.77 Total: -1.00 -36.61 316.86 -8.34 -44.95 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.37 Total: 2.59 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -0.57 Total: -21.84 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.35 Total: -33.25 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -1.94 Total: -46.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 35.43 SS G_CDS: -2.55 Total: 32.88 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.61 -8.34 -44.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331420469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.618 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds