Wall clock time and date at job start Fri Apr 10 2020 23:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 110.54159 * 2 1 4 4 O 1.42100 * 110.54087 * 223.24757 * 2 1 3 5 5 C 1.76196 * 104.44797 * 111.62839 * 2 1 3 6 6 C 1.33847 * 122.44711 * 90.02272 * 5 2 1 7 7 S 1.70620 * 110.96833 * 180.02562 * 6 5 2 8 8 C 1.75827 * 91.56867 * 0.02562 * 7 6 5 9 9 C 1.46464 * 125.46398 * 179.97438 * 8 7 6 10 10 O 1.21736 * 120.00109 * 173.48586 * 9 8 7 11 11 N 1.34778 * 119.99680 * 353.48696 * 9 8 7 12 12 C 1.36885 * 119.99850 * 173.36422 * 11 9 8 13 13 H 1.07996 * 120.00111 * 226.65513 * 12 11 9 14 14 C 1.39006 * 120.00022 * 46.65341 * 12 11 9 15 15 N 1.31398 * 119.99960 * 18.76698 * 14 12 11 16 16 Si 1.86807 * 119.99865 * 198.76689 * 14 12 11 17 17 H 1.48500 * 109.46769 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.46673 * 299.99590 * 16 14 12 19 19 H 1.48495 * 109.47056 * 60.00207 * 16 14 12 20 20 C 1.46503 * 120.00150 * 353.36430 * 11 9 8 21 21 C 1.53000 * 117.49596 * 182.04989 * 20 11 9 22 22 C 1.53003 * 117.49782 * 113.39268 * 20 11 9 23 23 C 1.36771 * 109.07701 * 0.23122 * 8 7 6 24 24 H 1.09000 * 109.46927 * 308.37578 * 1 2 3 25 25 H 1.09008 * 109.47084 * 68.37196 * 1 2 3 26 26 H 1.08995 * 109.47559 * 188.37053 * 1 2 3 27 27 H 1.07998 * 124.51584 * 359.96424 * 6 5 2 28 28 H 0.96997 * 119.99862 * 174.96729 * 15 14 12 29 29 H 1.08997 * 115.54762 * 327.72238 * 20 11 9 30 30 H 1.08993 * 117.50058 * 0.02562 * 21 20 11 31 31 H 1.09004 * 117.49372 * 145.02333 * 21 20 11 32 32 H 1.09001 * 117.49465 * 214.97846 * 22 20 11 33 33 H 1.08998 * 117.50006 * 0.02562 * 22 20 11 34 34 H 1.08003 * 123.36298 * 179.75295 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6289 1.5861 6 6 2.4333 -1.9352 1.8161 7 16 2.8496 -2.2164 3.4467 8 6 2.7724 -0.4985 3.8131 9 6 3.0272 0.1031 5.1239 10 8 3.0627 1.3143 5.2413 11 7 3.2225 -0.6843 6.2002 12 6 3.5943 -0.1300 7.3953 13 1 4.4022 -0.5655 7.9644 14 6 2.9319 0.9935 7.8764 15 7 1.7455 1.3078 7.4072 16 14 3.7286 2.0563 9.1899 17 1 2.8244 3.1843 9.5295 18 1 3.9771 1.2388 10.4045 19 1 5.0171 2.5903 8.6803 20 6 3.0368 -2.1334 6.0911 21 6 3.2267 -2.9674 7.3596 22 6 4.2755 -3.0180 6.2459 23 6 2.4306 0.1855 2.6791 24 1 -0.3633 0.6380 0.8056 25 1 -0.3634 0.3788 -0.9554 26 1 -0.3634 -1.0166 0.1496 27 1 2.3276 -2.7082 1.0694 28 1 1.2518 2.0481 7.7933 29 1 2.2719 -2.4575 5.3854 30 1 3.4893 -2.4379 8.2754 31 1 2.5869 -3.8405 7.4883 32 1 4.3253 -3.9243 5.6423 33 1 5.2285 -2.5218 6.4294 34 1 2.3145 1.2588 2.6451 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331420469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:26 Heat of formation + Delta-G solvation = -46.825322 kcal Electronic energy + Delta-G solvation = -22016.781633 eV Core-core repulsion = 18555.840432 eV Total energy + Delta-G solvation = -3460.941201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.043 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.59574 -38.88580 -38.09196 -37.61359 -36.93753 -34.90047 -33.06819 -30.97681 -30.24744 -27.53476 -25.93114 -23.61921 -23.06170 -22.75495 -20.44302 -19.81258 -19.38763 -18.13167 -17.77892 -17.39746 -17.14546 -16.72750 -16.38575 -16.13967 -15.70972 -15.27410 -14.79314 -14.55274 -14.19978 -14.02680 -13.86498 -13.84767 -13.54860 -13.14343 -13.03378 -12.97291 -12.95387 -12.81562 -12.58840 -12.27513 -12.18800 -12.02483 -11.82974 -11.60998 -11.12154 -10.81952 -10.24511 -9.97511 -9.73244 -9.09954 -8.27471 -6.09318 -0.83524 -0.49057 0.50084 0.90222 0.92425 1.35012 1.44724 1.47538 2.01453 2.23880 2.54802 2.90135 3.02347 3.04618 3.23375 3.28406 3.84906 3.96516 4.04486 4.12963 4.14255 4.20289 4.34672 4.38813 4.72490 4.82670 4.86085 4.97115 5.00635 5.18658 5.21868 5.41059 5.44918 6.13000 6.89545 7.05188 7.50185 8.15523 8.79964 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.004699 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.272362 B = 5956.792366 C = 7007.852513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.526 3.474 3 O -0.986 6.986 4 O -0.964 6.964 5 C -0.683 4.683 6 C -0.166 4.166 7 S 0.332 5.668 8 C -0.279 4.279 9 C 0.521 3.479 10 O -0.580 6.580 11 N -0.426 5.426 12 C -0.361 4.361 13 H 0.089 0.911 14 C 0.024 3.976 15 N -0.864 5.864 16 Si 0.974 3.026 17 H -0.287 1.287 18 H -0.249 1.249 19 H -0.283 1.283 20 C 0.009 3.991 21 C -0.151 4.151 22 C -0.172 4.172 23 C -0.036 4.036 24 H 0.140 0.860 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.218 0.782 28 H 0.263 0.737 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -13.171 -10.778 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.706 3.294 3 O -0.983 6.983 4 O -0.962 6.962 5 C -0.781 4.781 6 C -0.306 4.306 7 S 0.600 5.400 8 C -0.400 4.400 9 C 0.310 3.690 10 O -0.463 6.463 11 N -0.144 5.144 12 C -0.488 4.488 13 H 0.107 0.893 14 C -0.184 4.184 15 N -0.498 5.498 16 Si 0.798 3.202 17 H -0.213 1.213 18 H -0.173 1.173 19 H -0.209 1.209 20 C -0.097 4.097 21 C -0.188 4.188 22 C -0.210 4.210 23 C -0.066 4.066 24 H 0.159 0.841 25 H 0.177 0.823 26 H 0.179 0.821 27 H 0.235 0.765 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.107 0.893 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.100 0.900 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.422 -13.451 -10.507 17.408 hybrid contribution -0.499 2.336 0.655 2.477 sum -3.920 -11.114 -9.852 15.361 Atomic orbital electron populations 1.30018 1.19414 1.14506 1.13777 1.04428 0.79926 0.72804 0.72211 1.93530 1.79951 1.38630 1.86195 1.93513 1.79733 1.62031 1.60903 1.29318 1.24111 1.01816 1.22836 1.26292 0.98964 0.99326 1.05973 1.82987 1.59107 1.00909 0.96957 1.25250 1.15606 1.00224 0.98917 1.17348 0.82286 0.86545 0.82802 1.90627 1.54902 1.15641 1.85137 1.42770 1.60260 1.03852 1.07563 1.19149 1.17230 1.13229 0.99231 0.89318 1.26203 0.94384 0.98927 0.98888 1.69938 1.11702 1.27578 1.40586 0.85320 0.77896 0.78302 0.78655 1.21269 1.17308 1.20861 1.22275 1.01789 0.81504 1.04175 1.23176 1.02247 1.00692 0.92723 1.23483 0.93367 1.01472 1.02712 1.20205 0.96059 1.00481 0.89900 0.84102 0.82280 0.82076 0.76476 0.92814 0.85895 0.89310 0.85534 0.84656 0.90016 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -7.24 10.80 113.37 1.22 -6.01 16 2 S 2.53 58.44 5.85 -56.49 -0.33 58.11 16 3 O -0.99 -32.62 17.48 -127.65 -2.23 -34.85 16 4 O -0.96 -25.17 17.46 -127.65 -2.23 -27.40 16 5 C -0.68 -19.62 5.55 21.08 0.12 -19.51 16 6 C -0.17 -3.92 10.34 66.82 0.69 -3.23 16 7 S 0.33 9.13 17.88 -56.49 -1.01 8.12 16 8 C -0.28 -11.83 6.26 24.07 0.15 -11.68 16 9 C 0.52 28.26 7.05 86.39 0.61 28.87 16 10 O -0.58 -37.23 14.51 -4.46 -0.06 -37.30 16 11 N -0.43 -21.48 2.80 -617.83 -1.73 -23.21 16 12 C -0.36 -19.66 7.88 84.09 0.66 -19.00 16 13 H 0.09 4.55 7.33 -2.91 -0.02 4.53 16 14 C 0.02 1.34 4.37 84.94 0.37 1.72 16 15 N -0.86 -52.71 11.79 21.67 0.26 -52.46 16 16 Si 0.97 45.29 29.60 68.60 2.03 47.32 16 17 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 18 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 20 C 0.01 0.34 4.47 44.99 0.20 0.55 16 21 C -0.15 -4.66 9.81 30.62 0.30 -4.36 16 22 C -0.17 -4.88 9.99 30.62 0.31 -4.57 16 23 C -0.04 -1.39 9.48 21.74 0.21 -1.18 16 24 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.22 3.21 7.93 -2.91 -0.02 3.19 16 28 H 0.26 15.39 8.32 -92.71 -0.77 14.62 16 29 H 0.12 4.04 5.07 -18.70 -0.09 3.94 16 30 H 0.09 3.20 6.75 -2.39 -0.02 3.18 16 31 H 0.13 2.94 8.14 -2.38 -0.02 2.92 16 32 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.14 5.78 7.94 -2.91 -0.02 5.76 16 Total: -1.00 -88.65 316.86 0.58 -88.07 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.05 Total: 12.01 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 4.84 Total: -38.42 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.48 Total: -75.67 kcal Atomic # 8 Polarization: -95.02 SS G_CDS: -4.52 Total: -99.55 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 67.58 SS G_CDS: -1.34 Total: 66.24 kcal Total: -88.65 0.58 -88.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331420469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.243 kcal (2) G-P(sol) polarization free energy of solvation -88.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds