Wall clock time and date at job start Fri Apr 10 2020 23:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42108 * 110.54230 * 2 1 4 4 O 1.42102 * 110.54739 * 136.74968 * 2 1 3 5 5 C 1.76200 * 104.45132 * 248.37581 * 2 1 3 6 6 C 1.32765 * 124.70057 * 89.99706 * 5 2 1 7 7 C 1.44442 * 113.08214 * 179.97438 * 6 5 2 8 8 C 1.47115 * 123.46609 * 180.02562 * 7 6 5 9 9 O 1.21662 * 119.99932 * 150.38029 * 8 7 6 10 10 N 1.34774 * 120.00008 * 330.37339 * 8 7 6 11 11 C 1.36972 * 119.99857 * 184.16521 * 10 8 7 12 12 H 1.08004 * 119.99983 * 224.19784 * 11 10 8 13 13 C 1.38971 * 120.00089 * 44.20533 * 11 10 8 14 14 N 1.31423 * 119.99987 * 8.78154 * 13 11 10 15 15 Si 1.86798 * 120.00191 * 188.77790 * 13 11 10 16 16 H 1.48507 * 109.46998 * 89.99885 * 15 13 11 17 17 H 1.48493 * 109.47379 * 209.99957 * 15 13 11 18 18 H 1.48505 * 109.47057 * 330.00172 * 15 13 11 19 19 C 1.46498 * 120.00216 * 4.16623 * 10 8 7 20 20 C 1.52999 * 117.50191 * 181.61296 * 19 10 8 21 21 C 1.52998 * 60.00068 * 252.51395 * 20 19 10 22 22 C 1.36092 * 113.06359 * 0.02562 * 7 6 5 23 23 S 1.70454 * 110.80580 * 359.76292 * 22 7 6 24 24 H 1.09000 * 109.47352 * 51.62659 * 1 2 3 25 25 H 1.08999 * 109.46985 * 171.62503 * 1 2 3 26 26 H 1.09004 * 109.47603 * 291.62343 * 1 2 3 27 27 H 1.07994 * 123.45938 * 359.97042 * 6 5 2 28 28 H 0.97000 * 119.99909 * 184.99630 * 14 13 11 29 29 H 1.09005 * 115.55142 * 327.32556 * 19 10 8 30 30 H 1.08996 * 117.49560 * 0.02562 * 20 19 10 31 31 H 1.08996 * 117.49823 * 145.02327 * 20 19 10 32 32 H 1.09009 * 117.49570 * 252.51142 * 21 20 19 33 33 H 1.08997 * 117.52135 * 107.48119 * 21 20 19 34 34 H 1.07996 * 124.59788 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2536 -0.6288 -1.5862 6 6 2.4422 0.1162 -2.6688 7 6 2.7959 -0.6591 -3.8351 8 6 3.0564 -0.0652 -5.1556 9 8 3.8300 -0.6054 -5.9236 10 7 2.4381 1.0773 -5.5145 11 6 2.6143 1.5847 -6.7746 12 1 2.7916 2.6412 -6.9114 13 6 2.5647 0.7400 -7.8770 14 7 2.1799 -0.5082 -7.7316 15 14 3.0449 1.3786 -9.5654 16 1 4.4990 1.1661 -9.7799 17 1 2.2790 0.6484 -10.6071 18 1 2.7387 2.8292 -9.6514 19 6 1.5777 1.7766 -4.5570 20 6 0.8741 3.0477 -5.0367 21 6 2.0444 3.1448 -4.0560 22 6 2.8632 -1.9954 -3.5867 23 16 2.5091 -2.3260 -1.9524 24 1 -0.3634 0.6379 -0.8057 25 1 -0.3633 -1.0167 -0.1497 26 1 -0.3634 0.3787 0.9553 27 1 2.3414 1.1914 -2.6767 28 1 2.2143 -1.1173 -8.4858 29 1 1.0417 1.1391 -3.8538 30 1 1.0511 3.3634 -6.0648 31 1 -0.1251 3.2466 -4.6492 32 1 1.8151 3.4076 -3.0232 33 1 2.9918 3.5245 -4.4385 34 1 3.1118 -2.7444 -4.3239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331494762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:33 Heat of formation + Delta-G solvation = -14.478491 kcal Electronic energy + Delta-G solvation = -22316.835377 eV Core-core repulsion = 18857.296840 eV Total energy + Delta-G solvation = -3459.538537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.043 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.21624 -37.16336 -36.60758 -36.04915 -35.93619 -32.88478 -30.97512 -30.00776 -29.43682 -26.16203 -23.72867 -22.26542 -21.78988 -20.64673 -19.13153 -18.96488 -18.17344 -16.33744 -16.27451 -16.11023 -15.99268 -15.54002 -14.65198 -14.57446 -13.84940 -13.66709 -13.40703 -13.37103 -13.27586 -12.95381 -12.50744 -12.46031 -12.13907 -12.04135 -11.79536 -11.38772 -11.21174 -11.08616 -11.01045 -10.96487 -10.84590 -10.71073 -10.26207 -10.05446 -9.80203 -9.12377 -8.85795 -8.29103 -8.04376 -7.16781 -6.16222 -4.01404 -0.04469 0.78488 1.57431 2.01696 2.33789 2.79497 3.25794 3.31141 3.33006 3.77798 4.11879 4.15781 4.26936 4.57784 4.73918 4.76921 4.84514 5.18840 5.25197 5.42668 5.44766 5.51125 5.54429 5.66016 5.81079 5.94849 6.16733 6.20960 6.41751 6.46428 6.65466 6.82612 7.51127 8.15579 8.93559 9.03914 9.50765 10.16457 10.88224 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.004833 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.997587 B = 5791.768568 C = 6696.176312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.527 3.473 3 O -0.931 6.931 4 O -0.937 6.937 5 C -0.805 4.805 6 C 0.023 3.977 7 C -0.142 4.142 8 C 0.534 3.466 9 O -0.520 6.520 10 N -0.418 5.418 11 C -0.334 4.334 12 H 0.083 0.917 13 C 0.061 3.939 14 N -0.830 5.830 15 Si 0.916 3.084 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.059 3.941 20 C -0.172 4.172 21 C -0.210 4.210 22 C -0.164 4.164 23 S 0.241 5.759 24 H 0.135 0.865 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.172 0.828 28 H 0.265 0.735 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.720 -0.007 13.587 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.703 3.297 3 O -0.928 6.928 4 O -0.934 6.934 5 C -1.005 5.005 6 C -0.012 4.012 7 C -0.159 4.159 8 C 0.320 3.680 9 O -0.397 6.397 10 N -0.138 5.138 11 C -0.461 4.461 12 H 0.100 0.900 13 C -0.150 4.150 14 N -0.464 5.464 15 Si 0.743 3.257 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.047 4.047 20 C -0.209 4.209 21 C -0.249 4.249 22 C -0.303 4.303 23 S 0.508 5.492 24 H 0.153 0.847 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.189 0.811 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.906 -1.578 14.528 15.762 hybrid contribution -0.253 1.175 -2.583 2.849 sum -6.159 -0.404 11.945 13.445 Atomic orbital electron populations 1.30237 1.25642 1.12330 1.11851 1.04485 0.77734 0.74553 0.72886 1.93593 1.77424 1.36155 1.85664 1.93580 1.77518 1.61786 1.60542 1.35111 1.31429 1.08236 1.25756 1.21827 0.88731 1.01598 0.89076 1.21137 1.05349 0.92557 0.96841 1.17008 0.83455 0.83560 0.83998 1.90639 1.36144 1.61117 1.51823 1.42590 1.39039 1.21644 1.10504 1.18977 1.51834 0.94547 0.80716 0.89987 1.25317 0.94927 0.95482 0.99230 1.69854 1.40019 1.04439 1.32137 0.86129 0.78805 0.78593 0.82190 1.20333 1.21124 1.19640 1.22056 0.97956 0.87857 0.96796 1.23132 0.95517 1.01567 1.00706 1.23474 0.99906 1.02721 0.98835 1.25917 1.02554 1.00552 1.01301 1.82585 1.64987 1.00731 1.00875 0.84663 0.84828 0.85009 0.81105 0.92436 0.87557 0.87335 0.89513 0.88960 0.88611 0.80528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.32 10.79 101.05 1.09 -3.23 16 2 S 2.53 28.94 5.93 -107.50 -0.64 28.30 16 3 O -0.93 -13.37 17.61 -57.54 -1.01 -14.38 16 4 O -0.94 -12.95 17.73 -57.54 -1.02 -13.98 16 5 C -0.80 -11.49 6.16 28.86 0.18 -11.31 16 6 C 0.02 0.38 7.55 -39.02 -0.29 0.08 16 7 C -0.14 -2.91 5.59 -104.63 -0.58 -3.50 16 8 C 0.53 13.69 6.67 -12.66 -0.08 13.61 16 9 O -0.52 -15.40 14.54 5.22 0.08 -15.32 16 10 N -0.42 -10.30 2.85 -109.04 -0.31 -10.61 16 11 C -0.33 -8.86 8.00 -14.98 -0.12 -8.98 16 12 H 0.08 2.09 7.13 -52.48 -0.37 1.71 16 13 C 0.06 1.66 4.69 -17.45 -0.08 1.58 16 14 N -0.83 -24.04 11.17 55.50 0.62 -23.42 16 15 Si 0.92 21.23 29.57 -169.99 -5.03 16.20 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.06 1.15 4.39 -67.93 -0.30 0.85 16 20 C -0.17 -2.91 9.80 -26.73 -0.26 -3.17 16 21 C -0.21 -3.47 9.45 -26.73 -0.25 -3.72 16 22 C -0.16 -2.94 10.64 29.96 0.32 -2.62 16 23 S 0.24 3.36 22.78 -107.50 -2.45 0.91 16 24 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.17 2.73 4.83 -52.49 -0.25 2.47 16 28 H 0.27 7.38 8.32 -40.82 -0.34 7.04 16 29 H 0.11 1.82 5.57 -51.93 -0.29 1.53 16 30 H 0.11 2.03 6.68 -51.93 -0.35 1.69 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.26 8.13 -51.92 -0.42 0.84 16 33 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.18 3.16 8.06 -52.49 -0.42 2.73 16 LS Contribution 316.67 15.07 4.77 4.77 Total: -1.00 -36.23 316.67 -8.74 -44.97 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.36 Total: 2.96 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -0.39 Total: -20.40 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.31 Total: -34.03 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.96 Total: -43.68 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Atomic # 16 Polarization: 32.30 SS G_CDS: -3.09 Total: 29.21 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.23 -8.74 -44.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331494762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.491 kcal (2) G-P(sol) polarization free energy of solvation -36.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds