Wall clock time and date at job start Fri Apr 10 2020 23:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42108 * 110.54230 * 2 1 4 4 O 1.42102 * 110.54739 * 136.74968 * 2 1 3 5 5 C 1.76200 * 104.45132 * 248.37581 * 2 1 3 6 6 C 1.32765 * 124.70057 * 89.99706 * 5 2 1 7 7 C 1.44442 * 113.08214 * 179.97438 * 6 5 2 8 8 C 1.47115 * 123.46609 * 180.02562 * 7 6 5 9 9 O 1.21662 * 119.99932 * 150.38029 * 8 7 6 10 10 N 1.34774 * 120.00008 * 330.37339 * 8 7 6 11 11 C 1.36972 * 119.99857 * 184.16521 * 10 8 7 12 12 H 1.08004 * 119.99983 * 224.19784 * 11 10 8 13 13 C 1.38971 * 120.00089 * 44.20533 * 11 10 8 14 14 N 1.31423 * 119.99987 * 8.78154 * 13 11 10 15 15 Si 1.86798 * 120.00191 * 188.77790 * 13 11 10 16 16 H 1.48507 * 109.46998 * 89.99885 * 15 13 11 17 17 H 1.48493 * 109.47379 * 209.99957 * 15 13 11 18 18 H 1.48505 * 109.47057 * 330.00172 * 15 13 11 19 19 C 1.46498 * 120.00216 * 4.16623 * 10 8 7 20 20 C 1.52999 * 117.50191 * 181.61296 * 19 10 8 21 21 C 1.52998 * 60.00068 * 252.51395 * 20 19 10 22 22 C 1.36092 * 113.06359 * 0.02562 * 7 6 5 23 23 S 1.70454 * 110.80580 * 359.76292 * 22 7 6 24 24 H 1.09000 * 109.47352 * 51.62659 * 1 2 3 25 25 H 1.08999 * 109.46985 * 171.62503 * 1 2 3 26 26 H 1.09004 * 109.47603 * 291.62343 * 1 2 3 27 27 H 1.07994 * 123.45938 * 359.97042 * 6 5 2 28 28 H 0.97000 * 119.99909 * 184.99630 * 14 13 11 29 29 H 1.09005 * 115.55142 * 327.32556 * 19 10 8 30 30 H 1.08996 * 117.49560 * 0.02562 * 20 19 10 31 31 H 1.08996 * 117.49823 * 145.02327 * 20 19 10 32 32 H 1.09009 * 117.49570 * 252.51142 * 21 20 19 33 33 H 1.08997 * 117.52135 * 107.48119 * 21 20 19 34 34 H 1.07996 * 124.59788 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2536 -0.6288 -1.5862 6 6 2.4422 0.1162 -2.6688 7 6 2.7959 -0.6591 -3.8351 8 6 3.0564 -0.0652 -5.1556 9 8 3.8300 -0.6054 -5.9236 10 7 2.4381 1.0773 -5.5145 11 6 2.6143 1.5847 -6.7746 12 1 2.7916 2.6412 -6.9114 13 6 2.5647 0.7400 -7.8770 14 7 2.1799 -0.5082 -7.7316 15 14 3.0449 1.3786 -9.5654 16 1 4.4990 1.1661 -9.7799 17 1 2.2790 0.6484 -10.6071 18 1 2.7387 2.8292 -9.6514 19 6 1.5777 1.7766 -4.5570 20 6 0.8741 3.0477 -5.0367 21 6 2.0444 3.1448 -4.0560 22 6 2.8632 -1.9954 -3.5867 23 16 2.5091 -2.3260 -1.9524 24 1 -0.3634 0.6379 -0.8057 25 1 -0.3633 -1.0167 -0.1497 26 1 -0.3634 0.3787 0.9553 27 1 2.3414 1.1914 -2.6767 28 1 2.2143 -1.1173 -8.4858 29 1 1.0417 1.1391 -3.8538 30 1 1.0511 3.3634 -6.0648 31 1 -0.1251 3.2466 -4.6492 32 1 1.8151 3.4076 -3.0232 33 1 2.9918 3.5245 -4.4385 34 1 3.1118 -2.7444 -4.3239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331494762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:33 Heat of formation + Delta-G solvation = -42.126196 kcal Electronic energy + Delta-G solvation = -22318.034272 eV Core-core repulsion = 18857.296840 eV Total energy + Delta-G solvation = -3460.737432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.043 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.87400 -38.23197 -37.99582 -37.63235 -36.97091 -34.79335 -32.85616 -31.16525 -30.16790 -27.96677 -25.33485 -23.77785 -23.13172 -22.12170 -20.75501 -20.13093 -19.29412 -18.06924 -17.68034 -17.28119 -17.14728 -16.58188 -16.43543 -16.08806 -15.60135 -15.14938 -14.83557 -14.39540 -14.13894 -13.93176 -13.85541 -13.74477 -13.61214 -13.12761 -13.03027 -12.92560 -12.87855 -12.77503 -12.51826 -12.24330 -12.16495 -12.06789 -11.86998 -11.61236 -11.24789 -10.81096 -10.42081 -10.14334 -9.37055 -9.07559 -8.18976 -6.08283 -0.88889 -0.49961 0.39428 0.69617 0.89668 1.36775 1.42456 1.48861 1.85487 2.28311 2.60302 2.97112 3.05302 3.09417 3.31114 3.38213 3.87608 3.99830 4.07597 4.15931 4.17947 4.28133 4.30862 4.42417 4.54732 4.84255 4.89674 5.02659 5.06226 5.09228 5.24332 5.42212 5.47930 6.14934 6.95775 7.12783 7.58188 8.26589 8.84444 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.004833 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.997587 B = 5791.768568 C = 6696.176312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 S 2.526 3.474 3 O -0.963 6.963 4 O -0.964 6.964 5 C -0.798 4.798 6 C 0.010 3.990 7 C -0.176 4.176 8 C 0.519 3.481 9 O -0.583 6.583 10 N -0.433 5.433 11 C -0.345 4.345 12 H 0.085 0.915 13 C 0.007 3.993 14 N -0.869 5.869 15 Si 0.976 3.024 16 H -0.290 1.290 17 H -0.281 1.281 18 H -0.250 1.250 19 C 0.027 3.973 20 C -0.162 4.162 21 C -0.189 4.189 22 C -0.184 4.184 23 S 0.329 5.671 24 H 0.156 0.844 25 H 0.157 0.843 26 H 0.165 0.835 27 H 0.179 0.821 28 H 0.259 0.741 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 0.927 16.415 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.776 4.776 2 S 2.704 3.296 3 O -0.961 6.961 4 O -0.962 6.962 5 C -0.995 4.995 6 C -0.024 4.024 7 C -0.194 4.194 8 C 0.307 3.693 9 O -0.465 6.465 10 N -0.152 5.152 11 C -0.473 4.473 12 H 0.103 0.897 13 C -0.198 4.198 14 N -0.505 5.505 15 Si 0.801 3.199 16 H -0.217 1.217 17 H -0.207 1.207 18 H -0.173 1.173 19 C -0.078 4.078 20 C -0.200 4.200 21 C -0.228 4.228 22 C -0.325 4.325 23 S 0.597 5.403 24 H 0.174 0.826 25 H 0.175 0.825 26 H 0.183 0.817 27 H 0.196 0.804 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.377 -0.607 17.352 19.278 hybrid contribution 0.467 0.859 -3.230 3.375 sum -7.910 0.252 14.122 16.188 Atomic orbital electron populations 1.30049 1.18000 1.14814 1.14701 1.04708 0.80549 0.73195 0.71134 1.93552 1.80030 1.37135 1.85338 1.93548 1.80063 1.62231 1.60322 1.35716 1.29085 1.08378 1.26323 1.21594 0.90568 1.01879 0.88349 1.20870 1.08799 0.93863 0.95857 1.17810 0.82514 0.83598 0.85389 1.90566 1.38721 1.62907 1.54295 1.42811 1.39657 1.21874 1.10827 1.19255 1.51305 0.94668 0.82023 0.89707 1.26191 0.95116 0.95648 1.02880 1.69985 1.42201 1.05675 1.32626 0.85207 0.77447 0.79228 0.78057 1.21661 1.20667 1.17331 1.22400 0.99161 0.88963 0.97235 1.23226 0.97647 0.99197 0.99894 1.23495 0.98968 0.99626 1.00691 1.26051 1.02411 0.99807 1.04180 1.82249 1.62055 0.99738 0.96244 0.82605 0.82456 0.81693 0.80435 0.93184 0.85199 0.89697 0.85539 0.85099 0.90542 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -4.40 10.79 113.37 1.22 -3.18 16 2 S 2.53 49.12 5.93 -56.49 -0.33 48.79 16 3 O -0.96 -25.09 17.61 -127.65 -2.25 -27.34 16 4 O -0.96 -23.79 17.73 -127.65 -2.26 -26.05 16 5 C -0.80 -20.90 6.16 66.64 0.41 -20.49 16 6 C 0.01 0.31 7.55 22.67 0.17 0.49 16 7 C -0.18 -7.44 5.59 -19.87 -0.11 -7.55 16 8 C 0.52 28.04 6.67 86.57 0.58 28.62 16 9 O -0.58 -37.01 14.54 -4.23 -0.06 -37.07 16 10 N -0.43 -22.06 2.85 -617.12 -1.76 -23.82 16 11 C -0.34 -18.99 8.00 84.07 0.67 -18.32 16 12 H 0.09 4.46 7.13 -2.91 -0.02 4.43 16 13 C 0.01 0.41 4.69 84.93 0.40 0.81 16 14 N -0.87 -53.05 11.17 21.67 0.24 -52.80 16 15 Si 0.98 45.18 29.57 68.60 2.03 47.21 16 16 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 19 C 0.03 1.03 4.39 44.99 0.20 1.23 16 20 C -0.16 -5.20 9.80 30.59 0.30 -4.90 16 21 C -0.19 -5.88 9.45 30.59 0.29 -5.59 16 22 C -0.18 -6.78 10.64 67.32 0.72 -6.06 16 23 S 0.33 8.51 22.78 -56.49 -1.29 7.23 16 24 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.17 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.18 5.40 4.83 -2.91 -0.01 5.38 16 28 H 0.26 15.28 8.32 -92.71 -0.77 14.51 16 29 H 0.13 4.24 5.57 -2.38 -0.01 4.22 16 30 H 0.08 3.14 6.68 -2.39 -0.02 3.13 16 31 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.13 3.06 8.13 -2.38 -0.02 3.04 16 33 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.16 6.28 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -85.90 316.67 0.31 -85.59 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.15 Total: 13.21 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: 4.85 Total: -34.95 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -1.52 Total: -76.63 kcal Atomic # 8 Polarization: -85.89 SS G_CDS: -4.57 Total: -90.46 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 57.64 SS G_CDS: -1.62 Total: 56.02 kcal Total: -85.90 0.31 -85.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331494762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.466 kcal (2) G-P(sol) polarization free energy of solvation -85.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds