Wall clock time and date at job start Fri Apr 10 2020 23:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99746 * 2 1 4 4 H 1.48499 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47232 * 299.99746 * 3 2 1 6 6 H 1.48496 * 109.47433 * 59.99651 * 3 2 1 7 7 C 1.37872 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00167 * 0.02562 * 7 2 1 10 10 O 1.42896 * 113.28196 * 46.93605 * 9 7 2 11 11 C 1.53501 * 114.20656 * 180.02562 * 9 7 2 12 12 N 1.47068 * 87.98632 * 139.65320 * 11 9 7 13 13 C 1.34780 * 136.05672 * 152.83780 * 12 11 9 14 14 O 1.21594 * 119.99913 * 4.96366 * 13 12 11 15 15 C 1.47531 * 119.99955 * 184.95800 * 13 12 11 16 16 C 1.39755 * 120.17549 * 330.46662 * 15 13 12 17 17 C 1.37968 * 119.90191 * 180.02562 * 16 15 13 18 18 F 1.35098 * 119.87053 * 180.25681 * 17 16 15 19 19 C 1.38734 * 120.25994 * 359.97438 * 17 16 15 20 20 C 1.38138 * 120.35159 * 359.97438 * 19 17 16 21 21 Cl 1.73606 * 119.94982 * 180.02562 * 20 19 17 22 22 C 1.38793 * 120.09249 * 0.03300 * 20 19 17 23 23 O 1.35723 * 120.12738 * 179.97438 * 22 20 19 24 24 C 1.47065 * 87.88666 * 333.10092 * 12 11 9 25 25 H 0.96993 * 120.00447 * 0.02562 * 1 2 3 26 26 H 0.96699 * 114.00266 * 313.06082 * 10 9 7 27 27 H 1.09000 * 113.46881 * 24.87118 * 11 9 7 28 28 H 1.09001 * 113.51982 * 254.44210 * 11 9 7 29 29 H 1.07994 * 120.04702 * 0.02690 * 16 15 13 30 30 H 1.07996 * 119.81938 * 179.97438 * 19 17 16 31 31 H 0.96707 * 114.00026 * 89.99801 * 23 22 20 32 32 H 1.08996 * 113.46958 * 141.67862 * 24 12 11 33 33 H 1.08999 * 113.46433 * 272.12089 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.1929 -2.5404 -0.9588 11 6 2.1489 -3.7442 0.0018 12 7 1.2094 -4.3570 0.9529 13 6 0.8338 -5.6108 1.2746 14 8 1.3928 -6.5626 0.7646 15 6 -0.2554 -5.8283 2.2455 16 6 -0.4871 -4.8972 3.2617 17 6 -1.5069 -5.1065 4.1670 18 9 -1.7336 -4.2034 5.1458 19 6 -2.3043 -6.2379 4.0726 20 6 -2.0854 -7.1646 3.0718 21 17 -3.0900 -8.5763 2.9630 22 6 -1.0634 -6.9687 2.1533 23 8 -0.8474 -7.8790 1.1701 24 6 0.8552 -2.9995 1.3938 25 1 -0.4850 0.8399 -0.0004 26 1 -0.3708 -1.7547 -0.9567 27 1 3.1383 -3.5655 0.4230 28 1 2.1867 -4.2542 -0.9608 29 1 0.1313 -4.0151 3.3380 30 1 -3.1004 -6.3949 4.7853 31 1 -1.3426 -7.7056 0.3578 32 1 -0.2056 -2.8769 1.6122 33 1 1.4964 -2.6205 2.1896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331958546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:38 Heat of formation + Delta-G solvation = -103.934471 kcal Electronic energy + Delta-G solvation = -23922.326593 eV Core-core repulsion = 19890.652070 eV Total energy + Delta-G solvation = -4031.674522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -49.08646 -40.48067 -39.19888 -37.35515 -36.73677 -36.54793 -34.13323 -32.28043 -31.67993 -29.53958 -28.65068 -25.70760 -25.32992 -23.95211 -22.72976 -20.54979 -19.17383 -18.43985 -17.83655 -17.24263 -17.17059 -16.30842 -15.85506 -15.49085 -15.46639 -15.06612 -14.94930 -14.55670 -14.29907 -13.97885 -13.54094 -13.26022 -12.90985 -12.65578 -12.54195 -12.21799 -12.05645 -11.65352 -11.39569 -11.37657 -11.15286 -11.09372 -10.90059 -10.54144 -10.35821 -9.80581 -9.34970 -9.24996 -8.86892 -8.73653 -8.49408 -7.99298 -6.48822 -4.59423 0.46795 0.67536 1.71963 2.70760 3.08728 3.18295 3.21271 3.28360 3.48526 3.86925 3.99432 4.11694 4.41309 4.63770 4.75276 4.80048 5.06042 5.37250 5.43520 5.50587 5.65051 5.73919 5.85852 6.05626 6.26912 6.29761 6.32898 6.49023 6.56279 6.99461 7.47019 7.54864 7.70569 8.28212 8.44996 8.55455 9.12569 9.38605 10.58083 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.003893 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.367666 B = 7189.996385 C = 7967.711032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.242 3.758 10 O -0.571 6.571 11 C 0.110 3.890 12 N -0.628 5.628 13 C 0.577 3.423 14 O -0.533 6.533 15 C -0.101 4.101 16 C -0.101 4.101 17 C 0.099 3.901 18 F -0.127 7.127 19 C -0.117 4.117 20 C -0.048 4.048 21 Cl -0.043 7.043 22 C 0.161 3.839 23 O -0.463 6.463 24 C 0.064 3.936 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.396 0.604 32 H 0.068 0.932 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 -8.220 7.178 12.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.093 0.907 9 C 0.200 3.800 10 O -0.385 6.385 11 C -0.012 4.012 12 N -0.361 5.361 13 C 0.365 3.635 14 O -0.411 6.411 15 C -0.105 4.105 16 C -0.121 4.121 17 C 0.079 3.921 18 F -0.106 7.106 19 C -0.136 4.136 20 C -0.076 4.076 21 Cl -0.013 7.013 22 C 0.113 3.887 23 O -0.273 6.273 24 C -0.059 4.059 25 H 0.085 0.915 26 H 0.251 0.749 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.254 0.746 32 H 0.086 0.914 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.348 -9.738 7.232 13.256 hybrid contribution -0.417 1.702 0.211 1.765 sum -5.765 -8.036 7.442 12.378 Atomic orbital electron populations 1.69258 1.06234 1.28263 1.50070 1.25077 0.95020 1.00003 0.92871 0.86250 0.80096 0.82100 0.77945 1.19358 1.20564 1.20613 1.21461 0.94027 0.89615 1.52182 0.90745 1.19482 0.85415 0.91135 0.84010 1.86039 1.45182 1.48467 1.58767 1.23390 0.93813 0.91943 0.92017 1.49648 1.41966 1.04371 1.40112 1.17196 0.82856 0.81773 0.81665 1.90807 1.55865 1.40178 1.54288 1.20190 0.98571 0.93842 0.97931 1.21611 0.97202 0.99907 0.93340 1.17197 0.97251 0.88660 0.88973 1.91554 1.93996 1.65425 1.59616 1.20976 1.00977 0.92660 0.99037 1.20886 0.95371 0.92068 0.99226 1.98384 1.67130 1.38091 1.97742 1.18054 0.91594 0.87891 0.91123 1.84841 1.70443 1.47063 1.24987 1.24346 1.00651 0.77690 1.03244 0.91523 0.74856 0.89349 0.91230 0.82647 0.82968 0.74566 0.91369 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.78 11.01 55.43 0.61 -21.17 16 2 C 0.07 1.73 5.39 -17.82 -0.10 1.64 16 3 Si 0.91 18.67 29.54 -169.99 -5.02 13.65 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.53 -12.72 8.69 -34.44 -0.30 -13.02 16 8 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.24 5.47 1.57 -91.39 -0.14 5.33 16 10 O -0.57 -14.01 13.54 -35.23 -0.48 -14.49 16 11 C 0.11 2.27 8.04 -8.50 -0.07 2.20 16 12 N -0.63 -12.56 3.68 -186.59 -0.69 -13.24 16 13 C 0.58 11.39 7.69 -12.47 -0.10 11.29 16 14 O -0.53 -11.91 16.51 -14.04 -0.23 -12.15 16 15 C -0.10 -1.66 5.83 -104.86 -0.61 -2.27 16 16 C -0.10 -1.48 8.67 -39.11 -0.34 -1.82 16 17 C 0.10 1.28 7.28 -39.50 -0.29 0.99 16 18 F -0.13 -1.66 17.26 2.25 0.04 -1.62 16 19 C -0.12 -1.34 9.79 -39.43 -0.39 -1.72 16 20 C -0.05 -0.60 6.33 -39.41 -0.25 -0.85 16 21 Cl -0.04 -0.47 28.50 -51.86 -1.48 -1.95 16 22 C 0.16 2.38 6.68 -38.69 -0.26 2.12 16 23 O -0.46 -6.78 11.44 -38.20 -0.44 -7.22 16 24 C 0.06 1.27 5.65 -8.63 -0.05 1.22 16 25 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 26 H 0.39 9.83 6.33 45.56 0.29 10.12 16 27 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.16 2.27 5.84 -52.49 -0.31 1.96 16 30 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.40 4.29 9.06 45.56 0.41 4.70 16 32 H 0.07 1.36 7.36 -51.93 -0.38 0.98 16 33 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -27.70 311.49 -7.09 -34.79 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -1.22 Total: 13.59 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.88 Total: 5.10 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: -0.08 Total: -34.41 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.15 Total: -33.86 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.48 Total: -1.95 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.70 -7.09 -34.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331958546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.143 kcal (2) G-P(sol) polarization free energy of solvation -27.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds