Wall clock time and date at job start Fri Apr 10 2020 23:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99746 * 2 1 4 4 H 1.48499 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47232 * 299.99746 * 3 2 1 6 6 H 1.48496 * 109.47433 * 59.99651 * 3 2 1 7 7 C 1.37872 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00167 * 0.02562 * 7 2 1 10 10 O 1.42896 * 113.28196 * 46.93605 * 9 7 2 11 11 C 1.53501 * 114.20656 * 180.02562 * 9 7 2 12 12 N 1.47068 * 87.98632 * 139.65320 * 11 9 7 13 13 C 1.34780 * 136.05672 * 152.83780 * 12 11 9 14 14 O 1.21594 * 119.99913 * 4.96366 * 13 12 11 15 15 C 1.47531 * 119.99955 * 184.95800 * 13 12 11 16 16 C 1.39755 * 120.17549 * 330.46662 * 15 13 12 17 17 C 1.37968 * 119.90191 * 180.02562 * 16 15 13 18 18 F 1.35098 * 119.87053 * 180.25681 * 17 16 15 19 19 C 1.38734 * 120.25994 * 359.97438 * 17 16 15 20 20 C 1.38138 * 120.35159 * 359.97438 * 19 17 16 21 21 Cl 1.73606 * 119.94982 * 180.02562 * 20 19 17 22 22 C 1.38793 * 120.09249 * 0.03300 * 20 19 17 23 23 O 1.35723 * 120.12738 * 179.97438 * 22 20 19 24 24 C 1.47065 * 87.88666 * 333.10092 * 12 11 9 25 25 H 0.96993 * 120.00447 * 0.02562 * 1 2 3 26 26 H 0.96699 * 114.00266 * 313.06082 * 10 9 7 27 27 H 1.09000 * 113.46881 * 24.87118 * 11 9 7 28 28 H 1.09001 * 113.51982 * 254.44210 * 11 9 7 29 29 H 1.07994 * 120.04702 * 0.02690 * 16 15 13 30 30 H 1.07996 * 119.81938 * 179.97438 * 19 17 16 31 31 H 0.96707 * 114.00026 * 89.99801 * 23 22 20 32 32 H 1.08996 * 113.46958 * 141.67862 * 24 12 11 33 33 H 1.08999 * 113.46433 * 272.12089 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.1929 -2.5404 -0.9588 11 6 2.1489 -3.7442 0.0018 12 7 1.2094 -4.3570 0.9529 13 6 0.8338 -5.6108 1.2746 14 8 1.3928 -6.5626 0.7646 15 6 -0.2554 -5.8283 2.2455 16 6 -0.4871 -4.8972 3.2617 17 6 -1.5069 -5.1065 4.1670 18 9 -1.7336 -4.2034 5.1458 19 6 -2.3043 -6.2379 4.0726 20 6 -2.0854 -7.1646 3.0718 21 17 -3.0900 -8.5763 2.9630 22 6 -1.0634 -6.9687 2.1533 23 8 -0.8474 -7.8790 1.1701 24 6 0.8552 -2.9995 1.3938 25 1 -0.4850 0.8399 -0.0004 26 1 -0.3708 -1.7547 -0.9567 27 1 3.1383 -3.5655 0.4230 28 1 2.1867 -4.2542 -0.9608 29 1 0.1313 -4.0151 3.3380 30 1 -3.1004 -6.3949 4.7853 31 1 -1.3426 -7.7056 0.3578 32 1 -0.2056 -2.8769 1.6122 33 1 1.4964 -2.6205 2.1896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331958546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:37 Heat of formation + Delta-G solvation = -122.939232 kcal Electronic energy + Delta-G solvation = -23923.150701 eV Core-core repulsion = 19890.652070 eV Total energy + Delta-G solvation = -4032.498630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -50.11278 -41.83976 -40.60767 -38.88774 -37.83166 -37.56956 -35.91880 -34.12536 -32.87555 -30.67271 -30.22169 -27.39368 -26.95270 -25.19636 -23.84555 -22.10893 -20.61578 -19.59223 -19.48428 -18.66124 -18.39801 -17.61168 -17.18593 -16.96516 -16.63111 -16.51616 -16.32866 -16.01687 -15.81970 -15.06437 -14.96223 -14.71249 -14.30839 -14.15582 -13.85335 -13.72553 -13.42499 -13.25539 -12.80958 -12.77592 -12.46000 -12.33766 -12.23078 -12.15463 -12.01287 -11.41923 -11.03151 -10.67006 -10.33330 -10.25274 -9.80521 -9.61898 -8.28282 -6.44921 -0.64869 -0.38395 0.73637 1.45301 1.46629 1.52252 1.61722 1.78779 2.18353 2.40979 2.80577 2.88882 2.94026 3.18526 3.56704 3.68163 3.75773 3.94514 4.11541 4.28248 4.43020 4.44211 4.58517 4.60757 4.68873 4.74111 4.87142 4.90652 5.21738 5.28742 5.73152 5.89801 6.49068 6.61464 6.71673 6.99030 7.29322 7.47980 8.78213 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.003893 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.367666 B = 7189.996385 C = 7967.711032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.035 3.965 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.221 3.779 10 O -0.585 6.585 11 C 0.110 3.890 12 N -0.630 5.630 13 C 0.575 3.425 14 O -0.566 6.566 15 C -0.127 4.127 16 C -0.103 4.103 17 C 0.100 3.900 18 F -0.125 7.125 19 C -0.093 4.093 20 C -0.047 4.047 21 Cl -0.024 7.024 22 C 0.160 3.840 23 O -0.477 6.477 24 C 0.081 3.919 25 H 0.277 0.723 26 H 0.390 0.610 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.152 0.848 30 H 0.187 0.813 31 H 0.410 0.590 32 H 0.066 0.934 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.774 -8.249 8.670 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.165 4.165 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.179 3.821 10 O -0.398 6.398 11 C -0.012 4.012 12 N -0.362 5.362 13 C 0.366 3.634 14 O -0.448 6.448 15 C -0.131 4.131 16 C -0.122 4.122 17 C 0.080 3.920 18 F -0.104 7.104 19 C -0.112 4.112 20 C -0.074 4.074 21 Cl 0.005 6.995 22 C 0.112 3.888 23 O -0.290 6.290 24 C -0.042 4.042 25 H 0.087 0.913 26 H 0.246 0.754 27 H 0.124 0.876 28 H 0.077 0.923 29 H 0.170 0.830 30 H 0.204 0.796 31 H 0.270 0.730 32 H 0.084 0.916 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.171 -9.770 8.726 14.481 hybrid contribution -0.226 1.639 -0.262 1.675 sum -6.397 -8.132 8.464 13.368 Atomic orbital electron populations 1.69317 1.07143 1.28953 1.50351 1.25721 0.95704 1.02569 0.92550 0.85337 0.79028 0.78621 0.77639 1.19071 1.20883 1.20272 1.21687 0.94280 0.90394 1.52589 0.90594 1.19745 0.85519 0.91695 0.85132 1.86025 1.45698 1.48244 1.59857 1.23397 0.94578 0.91155 0.92106 1.49653 1.41881 1.04695 1.39973 1.17690 0.83098 0.80967 0.81643 1.90773 1.57162 1.40919 1.55901 1.19926 0.98980 0.95728 0.98465 1.21548 0.97797 0.99409 0.93460 1.17141 0.96998 0.89157 0.88658 1.91565 1.93916 1.65488 1.59411 1.21291 1.00501 0.91019 0.98394 1.20850 0.94975 0.92867 0.98724 1.98396 1.66317 1.37073 1.97681 1.18162 0.91862 0.87251 0.91572 1.84792 1.71195 1.47158 1.25841 1.24126 1.00755 0.77326 1.01982 0.91317 0.75408 0.87559 0.92308 0.83047 0.79604 0.72997 0.91568 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.34 11.01 21.45 0.24 -44.10 16 2 C 0.04 1.65 5.39 84.65 0.46 2.11 16 3 Si 0.97 37.78 29.54 68.60 2.03 39.80 16 4 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.55 -26.14 8.69 25.60 0.22 -25.92 16 8 H 0.08 3.49 7.81 -2.91 -0.02 3.46 16 9 C 0.22 10.05 1.57 -11.29 -0.02 10.04 16 10 O -0.59 -29.24 13.54 -148.98 -2.02 -31.26 16 11 C 0.11 4.57 8.04 83.18 0.67 5.24 16 12 N -0.63 -25.34 3.68 -862.99 -3.18 -28.51 16 13 C 0.58 22.94 7.69 86.69 0.67 23.61 16 14 O -0.57 -25.77 16.51 14.47 0.24 -25.53 16 15 C -0.13 -4.12 5.83 -20.02 -0.12 -4.23 16 16 C -0.10 -2.90 8.67 22.57 0.20 -2.71 16 17 C 0.10 2.37 7.28 22.32 0.16 2.53 16 18 F -0.13 -2.95 17.26 44.97 0.78 -2.18 16 19 C -0.09 -1.83 9.79 22.36 0.22 -1.61 16 20 C -0.05 -1.05 6.33 22.38 0.14 -0.91 16 21 Cl -0.02 -0.46 28.50 -2.72 -0.08 -0.54 16 22 C 0.16 4.54 6.68 22.85 0.15 4.69 16 23 O -0.48 -13.72 11.44 -71.98 -0.82 -14.55 16 24 C 0.08 3.21 5.65 83.10 0.47 3.67 16 25 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 26 H 0.39 19.82 6.33 -74.06 -0.47 19.35 16 27 H 0.11 3.98 8.10 -2.39 -0.02 3.96 16 28 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.15 4.32 5.84 -2.91 -0.02 4.31 16 30 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.41 8.75 9.06 -74.05 -0.67 8.08 16 32 H 0.07 2.64 7.36 -2.39 -0.02 2.62 16 33 H 0.10 3.65 8.09 -2.39 -0.02 3.63 16 Total: -1.00 -58.40 311.49 0.48 -57.92 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.07 Total: 32.44 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 3.22 Total: 16.50 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -2.94 Total: -72.61 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -2.60 Total: -71.33 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.80 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -58.40 0.48 -57.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331958546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.020 kcal (2) G-P(sol) polarization free energy of solvation -58.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds