Wall clock time and date at job start Fri Apr 10 2020 23:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99729 * 2 1 4 4 H 1.48495 * 109.47211 * 270.00385 * 3 2 1 5 5 H 1.48508 * 109.47019 * 30.00428 * 3 2 1 6 6 H 1.48501 * 109.47288 * 150.00124 * 3 2 1 7 7 C 1.37875 * 120.00652 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00403 * 174.31274 * 7 2 1 9 9 C 1.50702 * 119.99786 * 354.31289 * 7 2 1 10 10 C 1.53004 * 115.54922 * 93.49439 * 9 7 2 11 11 N 1.46502 * 109.46851 * 55.57237 * 10 9 7 12 12 S 1.65601 * 120.00056 * 164.16813 * 11 10 9 13 13 O 1.42105 * 106.40294 * 311.46540 * 12 11 10 14 14 O 1.42090 * 106.40250 * 178.54241 * 12 11 10 15 15 C 1.76208 * 107.21446 * 65.00157 * 12 11 10 16 16 C 1.38238 * 120.00418 * 115.00404 * 15 12 11 17 17 C 1.38218 * 120.01201 * 179.97438 * 16 15 12 18 18 C 1.38262 * 120.02490 * 0.02562 * 17 16 15 19 19 C 1.38196 * 120.01598 * 0.02562 * 18 17 16 20 20 C 1.38333 * 120.00831 * 295.00146 * 15 12 11 21 21 Cl 1.73602 * 120.01270 * 359.97438 * 20 15 12 22 22 C 1.52995 * 117.50126 * 239.16928 * 9 7 2 23 23 C 1.53003 * 117.49770 * 307.83389 * 9 7 2 24 24 H 0.96999 * 120.00866 * 5.00099 * 1 2 3 25 25 H 1.09000 * 109.47398 * 295.57673 * 10 9 7 26 26 H 1.09003 * 109.46920 * 175.57043 * 10 9 7 27 27 H 0.97004 * 120.00070 * 344.17608 * 11 10 9 28 28 H 1.07997 * 119.98961 * 359.97438 * 16 15 12 29 29 H 1.07994 * 119.98626 * 180.27090 * 17 16 15 30 30 H 1.08002 * 119.98947 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.00699 * 180.02562 * 19 18 17 32 32 H 1.08993 * 117.50213 * 215.00251 * 22 9 7 33 33 H 1.09002 * 117.49678 * 0.02617 * 22 9 7 34 34 H 1.08995 * 117.49860 * 359.96580 * 23 9 7 35 35 H 1.08998 * 117.49850 * 144.97737 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0806 -1.1962 -0.0932 9 6 1.2567 -2.4960 0.1282 10 6 0.8837 -3.1759 -1.1907 11 7 2.0916 -3.3775 -1.9948 12 16 2.0674 -4.4251 -3.2771 13 8 1.4785 -5.6278 -2.8016 14 8 3.3607 -4.3719 -3.8632 15 6 0.9526 -3.7631 -4.4704 16 6 1.4237 -3.3523 -5.7034 17 6 0.5494 -2.8335 -6.6397 18 6 -0.7968 -2.7247 -6.3436 19 6 -1.2688 -3.1341 -5.1109 20 6 -0.3941 -3.6545 -4.1736 21 17 -0.9865 -4.1710 -2.6257 22 6 1.6070 -3.3977 1.3135 23 6 0.2790 -2.6365 1.2966 24 1 -0.4851 0.8368 -0.0732 25 1 0.1833 -2.5459 -1.7389 26 1 0.4199 -4.1404 -0.9838 27 1 2.9056 -2.8974 -1.7761 28 1 2.4752 -3.4367 -5.9350 29 1 0.9172 -2.5167 -7.6044 30 1 -1.4796 -2.3196 -7.0758 31 1 -2.3204 -3.0494 -4.8799 32 1 1.5718 -4.4753 1.1539 33 1 2.3781 -3.0489 2.0005 34 1 0.1771 -1.7875 1.9725 35 1 -0.6300 -3.2131 1.1256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332103407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:43 Heat of formation + Delta-G solvation = -15.105753 kcal Electronic energy + Delta-G solvation = -22505.648186 eV Core-core repulsion = 19044.038742 eV Total energy + Delta-G solvation = -3461.609444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.29667 -37.28803 -36.77258 -36.41257 -35.50449 -33.31801 -31.92745 -31.44663 -30.85957 -25.95526 -25.02669 -23.43874 -22.90421 -21.06459 -19.59859 -19.12217 -18.06497 -17.02260 -16.38544 -16.14607 -15.77040 -15.28945 -14.86438 -14.67746 -14.14478 -14.02445 -13.88169 -13.37051 -13.12318 -12.59885 -12.44366 -12.10588 -11.78577 -11.69376 -11.62620 -11.41225 -11.31366 -11.11730 -11.00684 -10.81574 -10.51434 -10.35061 -10.17033 -9.57248 -9.39829 -9.08583 -8.79859 -8.64258 -8.37702 -8.08186 -6.08730 -4.16692 0.55418 0.83123 1.04721 1.99630 3.21112 3.24007 3.32003 3.35435 3.50505 3.99581 4.34287 4.45825 4.68985 4.85517 5.00578 5.16699 5.26357 5.35909 5.36216 5.61625 5.81783 5.90850 5.92526 6.11776 6.28733 6.37543 6.44096 6.55544 6.57720 6.80112 6.99711 7.13016 7.42450 7.59765 7.76551 7.80543 8.36578 8.84643 9.49510 10.98292 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.006049 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.377014 B = 4627.800786 C = 5016.470417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.061 0.939 9 C 0.030 3.970 10 C 0.153 3.847 11 N -1.088 6.088 12 S 2.689 3.311 13 O -0.952 6.952 14 O -0.970 6.970 15 C -0.668 4.668 16 C -0.012 4.012 17 C -0.141 4.141 18 C -0.059 4.059 19 C -0.131 4.131 20 C 0.053 3.947 21 Cl -0.025 7.025 22 C -0.213 4.213 23 C -0.142 4.142 24 H 0.260 0.740 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.424 0.576 28 H 0.150 0.850 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -5.169 -11.290 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.535 4.535 8 H 0.079 0.921 9 C 0.028 3.972 10 C 0.027 3.973 11 N -0.851 5.851 12 S 2.775 3.225 13 O -0.941 6.941 14 O -0.960 6.960 15 C -0.752 4.752 16 C -0.031 4.031 17 C -0.160 4.160 18 C -0.078 4.078 19 C -0.151 4.151 20 C 0.025 3.975 21 Cl 0.004 6.996 22 C -0.251 4.251 23 C -0.180 4.180 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.261 0.739 28 H 0.168 0.832 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.560 -5.949 -11.224 12.959 hybrid contribution 0.029 1.812 -0.145 1.818 sum -2.531 -4.138 -11.370 12.361 Atomic orbital electron populations 1.69984 1.05794 1.26738 1.48558 1.24970 0.94820 0.98828 0.94358 0.86677 0.80074 0.83625 0.78164 1.20679 1.21220 1.19750 1.20351 0.92853 0.88562 1.51688 0.92074 1.19002 0.99085 0.94144 0.84988 1.21670 0.84136 0.97779 0.93690 1.55101 1.21959 1.64172 1.43888 1.02056 0.73082 0.74281 0.73116 1.93603 1.78805 1.42459 1.79281 1.93538 1.37390 1.87112 1.78001 1.31149 1.09127 1.19269 1.15671 1.20975 1.00810 0.91028 0.90324 1.21350 0.93615 1.00884 1.00184 1.21404 0.95917 0.94746 0.95686 1.21214 1.00226 1.00294 0.93340 1.20648 0.92569 0.95577 0.88728 1.98493 1.89186 1.88422 1.23455 1.23120 1.00092 0.96015 1.05847 1.22438 0.90903 1.00684 1.03995 0.92975 0.91014 0.92812 0.73891 0.83229 0.84620 0.84536 0.84087 0.91538 0.90356 0.89441 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.34 12.40 55.43 0.69 -22.66 16 2 C 0.07 1.92 5.36 -17.82 -0.10 1.82 16 3 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.50 -12.62 8.06 -34.44 -0.28 -12.90 16 8 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 9 C 0.03 0.70 1.73 -155.66 -0.27 0.43 16 10 C 0.15 3.23 4.00 -4.04 -0.02 3.21 16 11 N -1.09 -20.91 5.92 -10.61 -0.06 -20.98 16 12 S 2.69 47.84 5.44 -107.50 -0.58 47.25 16 13 O -0.95 -18.63 15.96 -57.17 -0.91 -19.54 16 14 O -0.97 -18.06 16.97 -57.17 -0.97 -19.03 16 15 C -0.67 -10.69 5.89 -39.55 -0.23 -10.92 16 16 C -0.01 -0.16 9.55 -39.59 -0.38 -0.54 16 17 C -0.14 -1.54 10.05 -39.58 -0.40 -1.94 16 18 C -0.06 -0.63 10.05 -39.59 -0.40 -1.02 16 19 C -0.13 -1.68 9.83 -39.55 -0.39 -2.07 16 20 C 0.05 0.84 6.10 -39.50 -0.24 0.59 16 21 Cl -0.03 -0.43 20.61 -51.86 -1.07 -1.50 16 22 C -0.21 -4.59 9.93 -26.69 -0.27 -4.86 16 23 C -0.14 -3.24 8.98 -26.69 -0.24 -3.48 16 24 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 25 H 0.07 1.58 6.22 -51.93 -0.32 1.25 16 26 H 0.05 1.10 5.76 -51.93 -0.30 0.80 16 27 H 0.42 7.98 8.00 -34.47 -0.28 7.71 16 28 H 0.15 1.79 7.33 -52.49 -0.38 1.41 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.09 2.15 7.99 -51.93 -0.42 1.73 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -30.29 317.73 -10.13 -40.41 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -3.78 Total: 7.71 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: -3.20 Total: -31.68 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.62 Total: -43.63 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.88 Total: -38.57 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 47.84 SS G_CDS: -0.58 Total: 47.25 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.07 Total: -1.50 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.29 -10.13 -40.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332103407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.306 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds