Wall clock time and date at job start Fri Apr 10 2020 23:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99729 * 2 1 4 4 H 1.48495 * 109.47211 * 270.00385 * 3 2 1 5 5 H 1.48508 * 109.47019 * 30.00428 * 3 2 1 6 6 H 1.48501 * 109.47288 * 150.00124 * 3 2 1 7 7 C 1.37875 * 120.00652 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00403 * 174.31274 * 7 2 1 9 9 C 1.50702 * 119.99786 * 354.31289 * 7 2 1 10 10 C 1.53004 * 115.54922 * 93.49439 * 9 7 2 11 11 N 1.46502 * 109.46851 * 55.57237 * 10 9 7 12 12 S 1.65601 * 120.00056 * 164.16813 * 11 10 9 13 13 O 1.42105 * 106.40294 * 311.46540 * 12 11 10 14 14 O 1.42090 * 106.40250 * 178.54241 * 12 11 10 15 15 C 1.76208 * 107.21446 * 65.00157 * 12 11 10 16 16 C 1.38238 * 120.00418 * 115.00404 * 15 12 11 17 17 C 1.38218 * 120.01201 * 179.97438 * 16 15 12 18 18 C 1.38262 * 120.02490 * 0.02562 * 17 16 15 19 19 C 1.38196 * 120.01598 * 0.02562 * 18 17 16 20 20 C 1.38333 * 120.00831 * 295.00146 * 15 12 11 21 21 Cl 1.73602 * 120.01270 * 359.97438 * 20 15 12 22 22 C 1.52995 * 117.50126 * 239.16928 * 9 7 2 23 23 C 1.53003 * 117.49770 * 307.83389 * 9 7 2 24 24 H 0.96999 * 120.00866 * 5.00099 * 1 2 3 25 25 H 1.09000 * 109.47398 * 295.57673 * 10 9 7 26 26 H 1.09003 * 109.46920 * 175.57043 * 10 9 7 27 27 H 0.97004 * 120.00070 * 344.17608 * 11 10 9 28 28 H 1.07997 * 119.98961 * 359.97438 * 16 15 12 29 29 H 1.07994 * 119.98626 * 180.27090 * 17 16 15 30 30 H 1.08002 * 119.98947 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.00699 * 180.02562 * 19 18 17 32 32 H 1.08993 * 117.50213 * 215.00251 * 22 9 7 33 33 H 1.09002 * 117.49678 * 0.02617 * 22 9 7 34 34 H 1.08995 * 117.49860 * 359.96580 * 23 9 7 35 35 H 1.08998 * 117.49850 * 144.97737 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0806 -1.1962 -0.0932 9 6 1.2567 -2.4960 0.1282 10 6 0.8837 -3.1759 -1.1907 11 7 2.0916 -3.3775 -1.9948 12 16 2.0674 -4.4251 -3.2771 13 8 1.4785 -5.6278 -2.8016 14 8 3.3607 -4.3719 -3.8632 15 6 0.9526 -3.7631 -4.4704 16 6 1.4237 -3.3523 -5.7034 17 6 0.5494 -2.8335 -6.6397 18 6 -0.7968 -2.7247 -6.3436 19 6 -1.2688 -3.1341 -5.1109 20 6 -0.3941 -3.6545 -4.1736 21 17 -0.9865 -4.1710 -2.6257 22 6 1.6070 -3.3977 1.3135 23 6 0.2790 -2.6365 1.2966 24 1 -0.4851 0.8368 -0.0732 25 1 0.1833 -2.5459 -1.7389 26 1 0.4199 -4.1404 -0.9838 27 1 2.9056 -2.8974 -1.7761 28 1 2.4752 -3.4367 -5.9350 29 1 0.9172 -2.5167 -7.6044 30 1 -1.4796 -2.3196 -7.0758 31 1 -2.3204 -3.0494 -4.8799 32 1 1.5718 -4.4753 1.1539 33 1 2.3781 -3.0489 2.0005 34 1 0.1771 -1.7875 1.9725 35 1 -0.6300 -3.2131 1.1256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332103407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:42 Heat of formation + Delta-G solvation = -34.715187 kcal Electronic energy + Delta-G solvation = -22506.498515 eV Core-core repulsion = 19044.038742 eV Total energy + Delta-G solvation = -3462.459773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.29515 -38.90708 -38.31382 -37.65302 -36.97300 -34.93324 -33.87133 -32.44924 -31.84658 -27.80960 -26.78476 -24.47686 -23.89982 -22.86445 -21.36373 -20.47703 -19.30946 -18.53743 -18.01286 -17.31284 -17.18440 -16.69643 -16.50245 -15.92760 -15.67495 -15.35879 -15.04884 -14.80470 -14.60875 -14.13802 -13.83023 -13.50086 -13.25695 -13.17275 -13.04210 -12.99406 -12.82927 -12.59342 -12.45861 -12.38306 -12.15757 -11.99286 -11.73912 -11.11856 -10.84221 -10.54589 -10.42238 -10.19956 -9.96892 -9.75814 -8.05125 -6.17177 -0.67652 -0.35976 0.06854 0.85123 1.42555 1.46483 1.54038 1.97233 2.35834 2.44949 2.64920 3.19896 3.27415 3.55472 3.72396 3.92784 4.17690 4.19954 4.22976 4.36320 4.56979 4.64637 4.68752 4.69654 4.82853 4.85565 5.04760 5.06657 5.21129 5.29818 5.31300 5.66139 5.67163 5.76210 5.80910 6.22316 6.44310 6.88221 7.50504 9.01397 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.006049 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.377014 B = 4627.800786 C = 5016.470417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.032 3.968 3 Si 0.942 3.058 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.058 0.942 9 C 0.008 3.992 10 C 0.166 3.834 11 N -1.094 6.094 12 S 2.701 3.299 13 O -0.976 6.976 14 O -0.982 6.982 15 C -0.686 4.686 16 C -0.026 4.026 17 C -0.131 4.131 18 C -0.045 4.045 19 C -0.138 4.138 20 C 0.027 3.973 21 Cl -0.051 7.051 22 C -0.197 4.197 23 C -0.146 4.146 24 H 0.259 0.741 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.423 0.577 28 H 0.160 0.840 29 H 0.178 0.822 30 H 0.182 0.818 31 H 0.160 0.840 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 -4.475 -13.635 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.169 4.169 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.006 3.994 10 C 0.040 3.960 11 N -0.856 5.856 12 S 2.792 3.208 13 O -0.966 6.966 14 O -0.973 6.973 15 C -0.775 4.775 16 C -0.045 4.045 17 C -0.150 4.150 18 C -0.063 4.063 19 C -0.157 4.157 20 C -0.001 4.001 21 Cl -0.022 7.022 22 C -0.234 4.234 23 C -0.185 4.185 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.260 0.740 28 H 0.177 0.823 29 H 0.195 0.805 30 H 0.200 0.800 31 H 0.177 0.823 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.669 -5.276 -13.535 14.770 hybrid contribution 0.052 1.603 0.441 1.663 sum -2.617 -3.673 -13.094 13.849 Atomic orbital electron populations 1.70083 1.06776 1.27168 1.49580 1.25568 0.95504 1.01415 0.94404 0.85810 0.78894 0.80337 0.78115 1.20245 1.21415 1.19582 1.20600 0.92925 0.89673 1.51190 0.92348 1.19182 0.99510 0.94376 0.86350 1.21418 0.84490 0.97486 0.92589 1.55078 1.21393 1.64214 1.44930 1.01367 0.72959 0.73601 0.72900 1.93564 1.79133 1.43854 1.80018 1.93512 1.38497 1.87253 1.78025 1.30733 1.08756 1.21785 1.16212 1.21309 1.02039 0.91234 0.89962 1.21874 0.93390 0.98711 1.00996 1.21985 0.96598 0.92511 0.95233 1.21603 1.00897 0.99559 0.93646 1.20868 0.93096 0.97591 0.88574 1.98470 1.89215 1.88877 1.25593 1.23117 0.99059 0.96693 1.04577 1.22334 0.91916 1.00476 1.03749 0.93141 0.92110 0.92350 0.74026 0.82294 0.80484 0.80024 0.82257 0.89834 0.90244 0.91617 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.45 12.40 21.45 0.27 -48.18 16 2 C 0.03 1.68 5.36 84.66 0.45 2.13 16 3 Si 0.94 41.53 29.54 68.60 2.03 43.56 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.51 -25.88 8.06 25.60 0.21 -25.67 16 8 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 9 C 0.01 0.37 1.73 -52.93 -0.09 0.28 16 10 C 0.17 7.12 4.00 86.38 0.35 7.46 16 11 N -1.09 -42.64 5.92 -187.48 -1.11 -43.75 16 12 S 2.70 96.86 5.44 -56.49 -0.31 96.55 16 13 O -0.98 -38.84 15.96 -128.00 -2.04 -40.88 16 14 O -0.98 -36.57 16.97 -128.00 -2.17 -38.74 16 15 C -0.69 -21.48 5.89 22.29 0.13 -21.35 16 16 C -0.03 -0.65 9.55 22.26 0.21 -0.43 16 17 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 18 C -0.05 -0.76 10.05 22.27 0.22 -0.53 16 19 C -0.14 -3.19 9.83 22.29 0.22 -2.97 16 20 C 0.03 0.83 6.10 22.32 0.14 0.96 16 21 Cl -0.05 -1.76 20.61 -2.72 -0.06 -1.81 16 22 C -0.20 -8.45 9.93 30.62 0.30 -8.15 16 23 C -0.15 -6.77 8.98 30.62 0.28 -6.50 16 24 H 0.26 13.46 8.32 -92.71 -0.77 12.69 16 25 H 0.06 2.73 6.22 -2.39 -0.01 2.72 16 26 H 0.06 2.43 5.76 -2.39 -0.01 2.42 16 27 H 0.42 16.23 8.00 -96.74 -0.77 15.46 16 28 H 0.16 3.52 7.33 -2.91 -0.02 3.50 16 29 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.07 3.30 7.99 -2.39 -0.02 3.28 16 35 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -65.38 317.73 -0.40 -65.78 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.35 Total: 24.33 kcal Atomic # 6 Polarization: -59.49 SS G_CDS: 2.64 Total: -56.85 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -0.84 Total: -91.93 kcal Atomic # 8 Polarization: -75.40 SS G_CDS: -4.22 Total: -79.62 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 96.86 SS G_CDS: -0.31 Total: 96.55 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.06 Total: -1.81 kcal Total: -65.38 -0.40 -65.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332103407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.064 kcal (2) G-P(sol) polarization free energy of solvation -65.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds