Wall clock time and date at job start Fri Apr 10 2020 23:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47095 * 272.38427 * 3 2 1 5 5 H 1.48507 * 109.47486 * 32.38242 * 3 2 1 6 6 H 1.48503 * 109.47481 * 152.38344 * 3 2 1 7 7 C 1.37870 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00466 * 356.58328 * 7 2 1 9 9 C 1.50706 * 119.99900 * 176.85059 * 7 2 1 10 10 C 1.52993 * 115.55179 * 294.27194 * 9 7 2 11 11 N 1.46501 * 109.46924 * 294.51547 * 10 9 7 12 12 S 1.65606 * 119.99827 * 160.10376 * 11 10 9 13 13 O 1.42108 * 106.40026 * 175.68493 * 12 11 10 14 14 O 1.42104 * 106.39989 * 308.60494 * 12 11 10 15 15 C 1.76194 * 107.21807 * 62.14607 * 12 11 10 16 16 C 1.38269 * 119.99495 * 269.72209 * 15 12 11 17 17 C 1.38212 * 120.02836 * 179.76708 * 16 15 12 18 18 C 1.38243 * 120.01325 * 0.51382 * 17 16 15 19 19 C 1.38332 * 119.98433 * 359.73828 * 18 17 16 20 20 Cl 1.73596 * 120.01203 * 180.02562 * 19 18 17 21 21 C 1.38200 * 119.99521 * 89.99964 * 15 12 11 22 22 C 1.53004 * 117.49569 * 148.59810 * 9 7 2 23 23 C 1.53007 * 117.49503 * 79.94237 * 9 7 2 24 24 H 0.97008 * 119.99820 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47488 * 54.51847 * 10 9 7 26 26 H 1.09000 * 109.47077 * 174.52149 * 10 9 7 27 27 H 0.96996 * 120.00235 * 340.10597 * 11 10 9 28 28 H 1.08004 * 119.98304 * 0.02562 * 16 15 12 29 29 H 1.07996 * 119.99753 * 180.25376 * 17 16 15 30 30 H 1.07993 * 120.00663 * 179.77094 * 18 17 16 31 31 H 1.08002 * 120.00202 * 359.95643 * 21 15 12 32 32 H 1.09000 * 117.50224 * 0.02562 * 22 9 7 33 33 H 1.08996 * 117.49564 * 145.02440 * 22 9 7 34 34 H 1.08998 * 117.49371 * 214.97947 * 23 9 7 35 35 H 1.08995 * 117.50180 * 359.97344 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4462 2.0755 -1.3989 5 1 1.4728 2.6377 0.7499 6 1 3.5711 1.4262 0.6490 7 6 2.0044 -1.1940 0.0005 8 1 1.4659 -2.1285 0.0567 9 6 3.5098 -1.1950 -0.0712 10 6 4.1087 -0.6634 -1.3748 11 7 3.7487 -1.5577 -2.4779 12 16 3.8177 -1.0141 -4.0407 13 8 3.5135 -2.1294 -4.8672 14 8 3.0835 0.2021 -4.0752 15 6 5.4958 -0.5919 -4.3725 16 6 5.9467 0.6922 -4.1286 17 6 7.2641 1.0229 -4.3841 18 6 8.1293 0.0726 -4.8937 19 6 7.6774 -1.2109 -5.1428 20 17 8.7633 -2.4049 -5.7820 21 6 6.3597 -1.5428 -4.8818 22 6 4.2498 -2.3338 0.6336 23 6 4.2788 -0.9213 1.2230 24 1 -0.4850 0.8401 0.0004 25 1 3.7181 0.3345 -1.5738 26 1 5.1939 -0.6174 -1.2838 27 1 3.4700 -2.4682 -2.2930 28 1 5.2701 1.4361 -3.7344 29 1 7.6168 2.0249 -4.1896 30 1 9.1577 0.3321 -5.0968 31 1 6.0064 -2.5448 -5.0758 32 1 3.6479 -3.0824 1.1488 33 1 5.1635 -2.7039 0.1687 34 1 5.2116 -0.3628 1.1454 35 1 3.6960 -0.7400 2.1260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332197819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:50 Heat of formation + Delta-G solvation = -26.512524 kcal Electronic energy + Delta-G solvation = -22050.074653 eV Core-core repulsion = 18587.970574 eV Total energy + Delta-G solvation = -3462.104078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.51642 -37.50912 -36.93647 -36.76546 -35.57706 -33.50854 -32.13386 -31.65563 -31.07944 -26.49838 -24.88720 -23.65423 -23.07947 -21.65139 -19.53399 -19.15820 -18.17718 -17.25585 -16.69066 -16.22172 -16.03030 -15.26143 -15.23825 -14.87209 -14.34184 -14.08488 -13.93570 -13.48329 -13.35200 -12.68339 -12.58122 -12.50230 -12.01191 -11.96870 -11.81257 -11.70315 -11.66691 -11.48426 -11.01859 -10.83407 -10.66273 -10.62992 -10.29986 -9.73669 -9.63398 -9.23537 -9.15009 -8.87864 -8.69463 -8.50464 -6.12073 -4.14884 0.35197 0.67308 0.81402 1.75586 2.96990 3.30260 3.38215 3.39443 3.41560 3.96641 4.31535 4.41907 4.53431 4.62069 4.77543 4.82375 5.02664 5.17447 5.19956 5.38735 5.54492 5.65063 5.76387 5.80503 5.85138 5.89945 5.99979 6.07089 6.31725 6.41153 6.54597 6.67003 7.00026 7.08544 7.50109 7.69475 8.46040 8.89453 9.50504 10.99633 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.004588 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.410273 B = 6100.809361 C = 6252.615092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.084 3.916 3 Si 0.852 3.148 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.249 1.249 7 C -0.487 4.487 8 H 0.078 0.922 9 C -0.008 4.008 10 C 0.149 3.851 11 N -1.087 6.087 12 S 2.690 3.310 13 O -0.962 6.962 14 O -0.946 6.946 15 C -0.662 4.662 16 C -0.017 4.017 17 C -0.128 4.128 18 C -0.061 4.061 19 C -0.059 4.059 20 Cl -0.064 7.064 21 C -0.009 4.009 22 C -0.181 4.181 23 C -0.187 4.187 24 H 0.266 0.734 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.423 0.577 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.837 0.076 -8.408 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.120 4.120 3 Si 0.679 3.321 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.173 1.173 7 C -0.524 4.524 8 H 0.096 0.904 9 C -0.011 4.011 10 C 0.023 3.977 11 N -0.849 5.849 12 S 2.776 3.224 13 O -0.952 6.952 14 O -0.936 6.936 15 C -0.746 4.746 16 C -0.036 4.036 17 C -0.146 4.146 18 C -0.080 4.080 19 C -0.086 4.086 20 Cl -0.035 7.035 21 C -0.029 4.029 22 C -0.218 4.218 23 C -0.226 4.226 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.260 0.740 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.149 0.355 -9.104 19.419 hybrid contribution 1.161 0.585 0.211 1.317 sum 18.310 0.940 -8.893 20.377 Atomic orbital electron populations 1.69872 1.06389 1.27260 1.49330 1.24902 0.94536 0.98997 0.93567 0.87229 0.81554 0.84071 0.79251 1.19036 1.21663 1.17300 1.20201 0.86111 0.94574 1.51496 0.90376 1.19501 0.95141 0.98803 0.87624 1.21091 0.96215 0.92637 0.87739 1.54987 1.83379 1.24887 1.21660 1.02138 0.73439 0.73954 0.72877 1.93569 1.83058 1.52394 1.66222 1.93626 1.67077 1.46833 1.86061 1.31419 1.27106 1.01725 1.14385 1.21177 0.96231 0.94305 0.91878 1.21297 0.93305 1.00025 1.00015 1.21358 1.00600 0.91074 0.94920 1.20989 0.91892 0.91447 1.04316 1.98381 1.63528 1.56498 1.85115 1.20829 0.90721 0.99489 0.91860 1.22808 1.01277 0.91926 1.05762 1.23065 1.01209 0.98390 0.99921 0.92417 0.91400 0.93756 0.74043 0.83390 0.83973 0.84236 0.83110 0.89526 0.90839 0.91192 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 2 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 3 Si 0.85 20.51 24.88 -169.99 -4.23 16.28 16 4 H -0.26 -6.41 7.02 56.52 0.40 -6.01 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.25 -5.40 5.81 56.52 0.33 -5.07 16 7 C -0.49 -12.80 9.31 -34.44 -0.32 -13.12 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 9 C -0.01 -0.17 0.85 -155.66 -0.13 -0.31 16 10 C 0.15 2.82 5.66 -4.04 -0.02 2.80 16 11 N -1.09 -19.03 5.88 -10.62 -0.06 -19.09 16 12 S 2.69 45.84 5.73 -107.50 -0.62 45.22 16 13 O -0.96 -17.59 17.28 -57.17 -0.99 -18.58 16 14 O -0.95 -19.44 16.79 -57.17 -0.96 -20.40 16 15 C -0.66 -9.12 5.89 -39.58 -0.23 -9.35 16 16 C -0.02 -0.21 9.52 -39.58 -0.38 -0.58 16 17 C -0.13 -1.23 10.05 -39.59 -0.40 -1.63 16 18 C -0.06 -0.57 9.83 -39.54 -0.39 -0.96 16 19 C -0.06 -0.65 6.32 -39.50 -0.25 -0.90 16 20 Cl -0.06 -0.64 28.96 -51.86 -1.50 -2.14 16 21 C -0.01 -0.12 9.31 -39.55 -0.37 -0.48 16 22 C -0.18 -3.27 9.96 -26.69 -0.27 -3.54 16 23 C -0.19 -3.59 8.15 -26.69 -0.22 -3.81 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.07 1.40 4.51 -51.93 -0.23 1.16 16 26 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.42 6.97 8.69 -34.47 -0.30 6.67 16 28 H 0.15 1.78 7.61 -52.48 -0.40 1.38 16 29 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.15 1.76 7.62 -52.49 -0.40 1.36 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -32.53 325.29 -9.68 -42.21 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.93 Total: 7.20 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -3.07 Total: -29.65 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.71 Total: -45.04 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -1.95 Total: -38.98 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.23 Total: 16.28 kcal Atomic # 16 Polarization: 45.84 SS G_CDS: -0.62 Total: 45.22 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.53 -9.68 -42.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332197819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.697 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds