Wall clock time and date at job start Fri Apr 10 2020 23:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47095 * 272.38427 * 3 2 1 5 5 H 1.48507 * 109.47486 * 32.38242 * 3 2 1 6 6 H 1.48503 * 109.47481 * 152.38344 * 3 2 1 7 7 C 1.37870 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00466 * 356.58328 * 7 2 1 9 9 C 1.50706 * 119.99900 * 176.85059 * 7 2 1 10 10 C 1.52993 * 115.55179 * 294.27194 * 9 7 2 11 11 N 1.46501 * 109.46924 * 294.51547 * 10 9 7 12 12 S 1.65606 * 119.99827 * 160.10376 * 11 10 9 13 13 O 1.42108 * 106.40026 * 175.68493 * 12 11 10 14 14 O 1.42104 * 106.39989 * 308.60494 * 12 11 10 15 15 C 1.76194 * 107.21807 * 62.14607 * 12 11 10 16 16 C 1.38269 * 119.99495 * 269.72209 * 15 12 11 17 17 C 1.38212 * 120.02836 * 179.76708 * 16 15 12 18 18 C 1.38243 * 120.01325 * 0.51382 * 17 16 15 19 19 C 1.38332 * 119.98433 * 359.73828 * 18 17 16 20 20 Cl 1.73596 * 120.01203 * 180.02562 * 19 18 17 21 21 C 1.38200 * 119.99521 * 89.99964 * 15 12 11 22 22 C 1.53004 * 117.49569 * 148.59810 * 9 7 2 23 23 C 1.53007 * 117.49503 * 79.94237 * 9 7 2 24 24 H 0.97008 * 119.99820 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47488 * 54.51847 * 10 9 7 26 26 H 1.09000 * 109.47077 * 174.52149 * 10 9 7 27 27 H 0.96996 * 120.00235 * 340.10597 * 11 10 9 28 28 H 1.08004 * 119.98304 * 0.02562 * 16 15 12 29 29 H 1.07996 * 119.99753 * 180.25376 * 17 16 15 30 30 H 1.07993 * 120.00663 * 179.77094 * 18 17 16 31 31 H 1.08002 * 120.00202 * 359.95643 * 21 15 12 32 32 H 1.09000 * 117.50224 * 0.02562 * 22 9 7 33 33 H 1.08996 * 117.49564 * 145.02440 * 22 9 7 34 34 H 1.08998 * 117.49371 * 214.97947 * 23 9 7 35 35 H 1.08995 * 117.50180 * 359.97344 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4462 2.0755 -1.3989 5 1 1.4728 2.6377 0.7499 6 1 3.5711 1.4262 0.6490 7 6 2.0044 -1.1940 0.0005 8 1 1.4659 -2.1285 0.0567 9 6 3.5098 -1.1950 -0.0712 10 6 4.1087 -0.6634 -1.3748 11 7 3.7487 -1.5577 -2.4779 12 16 3.8177 -1.0141 -4.0407 13 8 3.5135 -2.1294 -4.8672 14 8 3.0835 0.2021 -4.0752 15 6 5.4958 -0.5919 -4.3725 16 6 5.9467 0.6922 -4.1286 17 6 7.2641 1.0229 -4.3841 18 6 8.1293 0.0726 -4.8937 19 6 7.6774 -1.2109 -5.1428 20 17 8.7633 -2.4049 -5.7820 21 6 6.3597 -1.5428 -4.8818 22 6 4.2498 -2.3338 0.6336 23 6 4.2788 -0.9213 1.2230 24 1 -0.4850 0.8401 0.0004 25 1 3.7181 0.3345 -1.5738 26 1 5.1939 -0.6174 -1.2838 27 1 3.4700 -2.4682 -2.2930 28 1 5.2701 1.4361 -3.7344 29 1 7.6168 2.0249 -4.1896 30 1 9.1577 0.3321 -5.0968 31 1 6.0064 -2.5448 -5.0758 32 1 3.6479 -3.0824 1.1488 33 1 5.1635 -2.7039 0.1687 34 1 5.2116 -0.3628 1.1454 35 1 3.6960 -0.7400 2.1260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332197819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:49 Heat of formation + Delta-G solvation = -50.178459 kcal Electronic energy + Delta-G solvation = -22051.100884 eV Core-core repulsion = 18587.970574 eV Total energy + Delta-G solvation = -3463.130310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36115 -39.07100 -38.36637 -37.56362 -37.01931 -34.95153 -34.19817 -32.51733 -31.92432 -28.26004 -26.62297 -24.56800 -23.92027 -23.14331 -21.08366 -20.56586 -19.29260 -18.84101 -18.21463 -17.25540 -17.18420 -16.80572 -16.40041 -16.17277 -15.71603 -15.07510 -14.98925 -14.85971 -14.77957 -14.59832 -14.06731 -13.49471 -13.30035 -13.23931 -13.21423 -12.87127 -12.79521 -12.77306 -12.62759 -12.35328 -12.09795 -12.02272 -11.76633 -11.46596 -10.91984 -10.63489 -10.55308 -10.40789 -10.18618 -9.98446 -8.25094 -6.30004 -0.75588 -0.41209 -0.02239 0.95753 1.39911 1.41311 1.52227 1.92453 2.29733 2.42231 2.68750 3.06121 3.24567 3.39062 3.65330 3.85393 3.91145 4.03442 4.17145 4.25863 4.31307 4.48517 4.49892 4.55068 4.61846 4.79750 4.96963 4.99509 5.04124 5.06607 5.19983 5.47629 5.52515 5.60718 5.74381 6.13479 6.35127 6.77514 7.38633 8.90459 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.004588 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.410273 B = 6100.809361 C = 6252.615092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.020 3.980 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.299 1.299 6 H -0.203 1.203 7 C -0.477 4.477 8 H 0.032 0.968 9 C -0.043 4.043 10 C 0.151 3.849 11 N -1.093 6.093 12 S 2.697 3.303 13 O -0.986 6.986 14 O -0.991 6.991 15 C -0.663 4.663 16 C -0.032 4.032 17 C -0.115 4.115 18 C -0.047 4.047 19 C -0.064 4.064 20 Cl -0.056 7.056 21 C -0.022 4.022 22 C -0.159 4.159 23 C -0.178 4.178 24 H 0.262 0.738 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.425 0.575 28 H 0.147 0.853 29 H 0.180 0.820 30 H 0.175 0.825 31 H 0.150 0.850 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.842 1.104 -8.538 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.178 4.178 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.227 1.227 6 H -0.124 1.124 7 C -0.514 4.514 8 H 0.050 0.950 9 C -0.045 4.045 10 C 0.025 3.975 11 N -0.855 5.855 12 S 2.789 3.211 13 O -0.976 6.976 14 O -0.981 6.981 15 C -0.753 4.753 16 C -0.051 4.051 17 C -0.134 4.134 18 C -0.065 4.065 19 C -0.092 4.092 20 Cl -0.027 7.027 21 C -0.042 4.042 22 C -0.196 4.196 23 C -0.216 4.216 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.261 0.739 28 H 0.164 0.836 29 H 0.197 0.803 30 H 0.192 0.808 31 H 0.168 0.832 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 22.134 1.342 -9.207 24.010 hybrid contribution -0.307 0.135 0.198 0.390 sum 21.827 1.477 -9.009 23.659 Atomic orbital electron populations 1.70046 1.08516 1.27806 1.52770 1.25780 0.95131 1.02983 0.93864 0.86386 0.82270 0.79268 0.79104 1.19614 1.22651 1.12435 1.20436 0.89431 0.92425 1.49140 0.94965 1.19422 0.92223 1.02823 0.90030 1.21065 0.98562 0.91569 0.86273 1.54942 1.84070 1.24767 1.21691 1.01395 0.74584 0.72710 0.72369 1.93527 1.84408 1.53055 1.66627 1.93568 1.69811 1.48246 1.86501 1.30613 1.24413 1.03103 1.17150 1.21369 0.97762 0.93510 0.92502 1.21686 0.91747 1.01682 0.98243 1.21811 1.02133 0.89899 0.92705 1.21112 0.91386 0.92488 1.04211 1.98390 1.62909 1.56405 1.84965 1.20879 0.91559 0.99352 0.92398 1.22869 1.01636 0.91155 1.03962 1.23119 1.01660 0.99382 0.97482 0.92905 0.93318 0.89131 0.73891 0.83564 0.80284 0.80799 0.83229 0.90648 0.87130 0.87546 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.21 13.96 21.44 0.30 -59.91 16 2 C 0.02 1.13 5.47 84.65 0.46 1.60 16 3 Si 0.91 42.52 24.88 68.60 1.71 44.22 16 4 H -0.27 -12.85 7.02 99.48 0.70 -12.15 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.20 -7.88 5.81 99.48 0.58 -7.31 16 7 C -0.48 -25.82 9.31 25.60 0.24 -25.58 16 8 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 9 C -0.04 -1.73 0.85 -52.92 -0.05 -1.78 16 10 C 0.15 5.37 5.66 86.38 0.49 5.86 16 11 N -1.09 -37.81 5.88 -187.50 -1.10 -38.91 16 12 S 2.70 92.69 5.73 -56.49 -0.32 92.37 16 13 O -0.99 -37.01 17.28 -128.00 -2.21 -39.23 16 14 O -0.99 -41.86 16.79 -128.00 -2.15 -44.01 16 15 C -0.66 -17.12 5.89 22.27 0.13 -16.98 16 16 C -0.03 -0.69 9.52 22.27 0.21 -0.48 16 17 C -0.11 -1.66 10.05 22.26 0.22 -1.43 16 18 C -0.05 -0.65 9.83 22.29 0.22 -0.43 16 19 C -0.06 -1.19 6.32 22.32 0.14 -1.05 16 20 Cl -0.06 -0.94 28.96 -2.72 -0.08 -1.02 16 21 C -0.02 -0.50 9.31 22.29 0.21 -0.29 16 22 C -0.16 -5.30 9.96 30.62 0.30 -4.99 16 23 C -0.18 -6.16 8.15 30.62 0.25 -5.91 16 24 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 25 H 0.05 1.92 4.51 -2.39 -0.01 1.91 16 26 H 0.09 2.39 8.09 -2.39 -0.02 2.37 16 27 H 0.42 14.12 8.69 -96.75 -0.84 13.28 16 28 H 0.15 3.21 7.61 -2.91 -0.02 3.19 16 29 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 30 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 31 H 0.15 3.35 7.62 -2.91 -0.02 3.33 16 32 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.11 2.96 8.14 -2.39 -0.02 2.95 16 35 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -75.39 325.29 -0.88 -76.27 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.15 Total: 21.69 kcal Atomic # 6 Polarization: -54.32 SS G_CDS: 2.83 Total: -51.49 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -0.80 Total: -98.82 kcal Atomic # 8 Polarization: -78.87 SS G_CDS: -4.36 Total: -83.24 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.71 Total: 44.22 kcal Atomic # 16 Polarization: 92.69 SS G_CDS: -0.32 Total: 92.37 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -75.39 -0.88 -76.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332197819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.093 kcal (2) G-P(sol) polarization free energy of solvation -75.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds