Wall clock time and date at job start Fri Apr 10 2020 23:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99889 * 2 1 4 4 C 1.53000 * 117.50101 * 14.21989 * 3 2 1 5 5 C 1.53004 * 117.49981 * 305.56066 * 3 2 1 6 6 S 1.65606 * 119.99817 * 180.02562 * 2 1 3 7 7 O 1.42099 * 106.40007 * 164.55882 * 6 2 1 8 8 O 1.42097 * 106.40229 * 31.63846 * 6 2 1 9 9 C 1.76197 * 107.21491 * 278.09935 * 6 2 1 10 10 C 1.38637 * 119.75751 * 113.53146 * 9 6 2 11 11 C 1.37601 * 120.25872 * 180.25795 * 10 9 6 12 12 C 1.40739 * 119.77729 * 359.44421 * 11 10 9 13 13 C 1.41391 * 120.24248 * 180.25629 * 12 11 10 14 14 H 1.08000 * 120.00342 * 152.00563 * 13 12 11 15 15 C 1.39945 * 120.00089 * 332.00909 * 13 12 11 16 16 N 1.30828 * 120.00402 * 161.20726 * 15 13 12 17 17 Si 1.86796 * 119.99749 * 341.21462 * 15 13 12 18 18 H 1.48501 * 109.47554 * 87.77242 * 17 15 13 19 19 H 1.48505 * 109.47222 * 207.77575 * 17 15 13 20 20 H 1.48503 * 109.47212 * 327.77450 * 17 15 13 21 21 C 1.40677 * 119.52221 * 0.27689 * 12 11 10 22 22 C 1.37758 * 119.73316 * 359.97438 * 21 12 11 23 23 Cl 1.73600 * 119.89296 * 179.97438 * 22 21 12 24 24 H 1.09001 * 109.47414 * 269.99967 * 1 2 3 25 25 H 1.09001 * 109.47469 * 29.99969 * 1 2 3 26 26 H 1.09008 * 109.47300 * 149.99863 * 1 2 3 27 27 H 1.09000 * 115.54796 * 159.89388 * 3 2 1 28 28 H 1.09001 * 117.49542 * 0.02562 * 4 3 2 29 29 H 1.08999 * 117.49648 * 145.02226 * 4 3 2 30 30 H 1.09003 * 117.49696 * 214.98262 * 5 3 2 31 31 H 1.09001 * 117.49738 * 359.97438 * 5 3 2 32 32 H 1.07996 * 119.87014 * 359.97438 * 10 9 6 33 33 H 1.08006 * 120.10891 * 179.72154 * 11 10 9 34 34 H 0.96993 * 120.00152 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.13582 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 1.4114 2.5383 0.3334 5 6 1.8671 2.2752 -1.1041 6 16 2.2930 -1.4342 -0.0006 7 8 3.6315 -1.1246 -0.3634 8 8 1.4885 -2.3616 -0.7161 9 6 2.3483 -2.0051 1.6654 10 6 1.6707 -3.1616 2.0193 11 6 1.7025 -3.6139 3.3185 12 6 2.4362 -2.9046 4.2877 13 6 2.4801 -3.3635 5.6243 14 1 3.3359 -3.1402 6.2441 15 6 1.4146 -4.1071 6.1443 16 7 1.5874 -4.8358 7.2170 17 14 -0.2542 -4.0593 5.3065 18 1 -0.3072 -5.1002 4.2487 19 1 -1.3190 -4.3176 6.3089 20 1 -0.4634 -2.7219 4.6957 21 6 3.1251 -1.7354 3.9171 22 6 3.0754 -1.2977 2.6119 23 17 3.9234 0.1449 2.1501 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.2322 1.2141 0.3381 28 1 0.3493 2.4295 0.5531 29 1 1.9292 3.3191 0.8904 30 1 2.6846 2.8830 -1.4920 31 1 1.1051 1.9931 -1.8306 32 1 1.1118 -3.7072 1.2734 33 1 1.1700 -4.5127 3.5925 34 1 0.8488 -5.3508 7.5775 35 1 3.6915 -1.1836 4.6527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334807994.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:52 Heat of formation + Delta-G solvation = -47.084611 kcal Electronic energy + Delta-G solvation = -22393.406251 eV Core-core repulsion = 18930.410100 eV Total energy + Delta-G solvation = -3462.996151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85865 -39.10389 -38.28647 -37.50938 -36.83607 -35.81966 -34.10750 -32.74608 -31.58053 -27.74630 -27.58589 -23.80048 -23.23414 -23.16024 -22.45150 -20.03472 -19.69356 -19.20126 -18.51757 -17.45828 -17.23819 -16.40416 -16.25705 -15.96321 -15.50591 -15.24017 -14.79166 -14.72062 -14.63272 -14.39697 -13.80170 -13.52898 -13.45151 -13.19141 -13.07113 -12.93040 -12.80902 -12.70143 -12.52980 -12.25119 -12.23744 -12.11005 -12.06605 -11.74592 -11.43173 -11.19803 -11.01241 -10.11348 -9.70868 -9.59741 -9.21691 -6.89994 -0.49980 0.08965 0.55152 1.03479 1.20582 1.32782 1.42052 1.94088 2.01236 2.26668 2.74881 3.01152 3.13985 3.38058 3.83364 3.97370 4.01996 4.13488 4.17464 4.37062 4.57873 4.59277 4.65029 4.69842 4.82854 4.87899 4.89367 5.08205 5.10330 5.20848 5.27163 5.29110 5.32203 5.58939 5.70232 5.80651 6.01417 6.34886 6.44330 7.82118 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.005175 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.594971 B = 5409.660927 C = 5707.888350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.969 5.969 3 C 0.048 3.952 4 C -0.167 4.167 5 C -0.183 4.183 6 S 2.715 3.285 7 O -0.981 6.981 8 O -0.991 6.991 9 C -0.804 4.804 10 C 0.020 3.980 11 C -0.273 4.273 12 C 0.110 3.890 13 C -0.433 4.433 14 H 0.079 0.921 15 C 0.054 3.946 16 N -0.799 5.799 17 Si 0.961 3.039 18 H -0.247 1.247 19 H -0.266 1.266 20 H -0.252 1.252 21 C -0.224 4.224 22 C 0.091 3.909 23 Cl -0.066 7.066 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.308 0.692 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 10.646 -9.417 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.806 5.806 3 C -0.058 4.058 4 C -0.206 4.206 5 C -0.223 4.223 6 S 2.810 3.190 7 O -0.971 6.971 8 O -0.982 6.982 9 C -0.896 4.896 10 C 0.000 4.000 11 C -0.293 4.293 12 C 0.106 3.894 13 C -0.459 4.459 14 H 0.097 0.903 15 C -0.168 4.168 16 N -0.420 5.420 17 Si 0.782 3.218 18 H -0.172 1.172 19 H -0.191 1.191 20 H -0.175 1.175 21 C -0.245 4.245 22 C 0.063 3.937 23 Cl -0.037 7.037 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.098 0.902 27 H 0.143 0.857 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.119 0.881 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.083 10.158 -9.915 15.077 hybrid contribution -0.221 -0.259 1.121 1.171 sum -5.304 9.899 -8.794 14.264 Atomic orbital electron populations 1.21805 0.77134 1.05117 1.03016 1.56810 1.15595 1.19313 1.88854 1.21844 0.96846 0.80498 1.06651 1.23423 1.01604 0.97221 0.98380 1.23519 1.04572 1.01769 0.92403 1.00802 0.72570 0.72104 0.73547 1.93505 1.36397 1.84203 1.83016 1.93454 1.70797 1.62549 1.71377 1.29756 1.23440 1.12440 1.23920 1.20513 0.91888 0.91466 0.96138 1.21417 1.10528 1.03549 0.93782 1.17896 0.89086 0.89301 0.93127 1.19845 1.04523 1.25151 0.96398 0.90324 1.26991 1.04717 0.90345 0.94794 1.69651 1.36530 1.16820 1.19018 0.85609 0.75727 0.81817 0.78599 1.17191 1.19128 1.17517 1.21082 1.09751 0.99312 0.94329 1.20130 0.92667 0.87193 0.93705 1.98312 1.76723 1.37154 1.91533 0.92052 0.87812 0.90201 0.85694 0.87026 0.87047 0.86923 0.87610 0.84170 0.86033 0.88061 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.67 9.80 127.77 1.25 2.92 16 2 N -0.97 -28.02 3.52 -516.51 -1.82 -29.84 16 3 C 0.05 1.23 5.24 44.99 0.24 1.47 16 4 C -0.17 -3.08 9.75 30.62 0.30 -2.79 16 5 C -0.18 -3.43 10.02 30.62 0.31 -3.13 16 6 S 2.72 100.36 5.10 -56.49 -0.29 100.07 16 7 O -0.98 -39.84 15.19 -128.00 -1.94 -41.78 16 8 O -0.99 -38.90 15.73 -128.00 -2.01 -40.91 16 9 C -0.80 -33.11 5.94 22.49 0.13 -32.98 16 10 C 0.02 0.83 9.52 22.21 0.21 1.04 16 11 C -0.27 -12.22 7.34 22.73 0.17 -12.05 16 12 C 0.11 5.23 5.15 -21.30 -0.11 5.12 16 13 C -0.43 -21.55 9.58 23.46 0.22 -21.32 16 14 H 0.08 4.14 8.06 -2.91 -0.02 4.11 16 15 C 0.05 2.51 5.41 85.26 0.46 2.97 16 16 N -0.80 -37.80 13.93 21.83 0.30 -37.50 16 17 Si 0.96 37.16 24.61 68.60 1.69 38.85 16 18 H -0.25 -9.04 6.29 99.48 0.63 -8.41 16 19 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 20 H -0.25 -10.03 7.10 99.48 0.71 -9.33 16 21 C -0.22 -10.00 9.57 22.75 0.22 -9.78 16 22 C 0.09 3.81 6.29 22.28 0.14 3.95 16 23 Cl -0.07 -2.35 22.90 -2.72 -0.06 -2.42 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.10 1.67 6.24 -2.39 -0.01 1.65 16 26 H 0.08 1.85 7.12 -2.38 -0.02 1.83 16 27 H 0.13 3.60 4.83 -2.39 -0.01 3.59 16 28 H 0.11 1.80 6.69 -2.39 -0.02 1.78 16 29 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.11 1.78 7.79 -2.39 -0.02 1.76 16 32 H 0.14 5.24 7.31 -2.91 -0.02 5.22 16 33 H 0.12 5.20 4.31 -2.91 -0.01 5.19 16 34 H 0.31 12.81 8.30 -92.71 -0.77 12.04 16 35 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -57.74 308.20 0.46 -57.28 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 1.05 Total: 20.83 kcal Atomic # 6 Polarization: -68.12 SS G_CDS: 3.54 Total: -64.58 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -1.52 Total: -67.34 kcal Atomic # 8 Polarization: -78.74 SS G_CDS: -3.96 Total: -82.70 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 1.69 Total: 38.85 kcal Atomic # 16 Polarization: 100.36 SS G_CDS: -0.29 Total: 100.07 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.06 Total: -2.42 kcal Total: -57.74 0.46 -57.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334807994.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.200 kcal (2) G-P(sol) polarization free energy of solvation -57.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds