Wall clock time and date at job start Fri Apr 10 2020 23:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38269 * 119.99386 * 2 1 4 4 C 1.38219 * 120.02359 * 180.25364 * 3 2 1 5 5 C 1.38231 * 120.01783 * 359.49319 * 4 3 2 6 6 C 1.38337 * 119.98169 * 0.25008 * 5 4 3 7 7 Cl 1.73609 * 120.00961 * 180.02562 * 6 5 4 8 8 C 1.38194 * 119.99502 * 179.74391 * 2 1 3 9 9 S 1.76198 * 120.00583 * 0.02562 * 8 2 1 10 10 O 1.42107 * 106.40142 * 32.45984 * 9 8 2 11 11 O 1.42103 * 106.40282 * 165.37881 * 9 8 2 12 12 N 1.65598 * 107.21924 * 278.91885 * 9 8 2 13 13 C 1.36938 * 119.99985 * 90.00157 * 12 9 8 14 14 H 1.07999 * 120.00084 * 229.24535 * 13 12 9 15 15 C 1.38814 * 120.00135 * 49.23803 * 13 12 9 16 16 N 1.31610 * 119.99739 * 25.28040 * 15 13 12 17 17 Si 1.86799 * 119.99908 * 205.28035 * 15 13 12 18 18 H 1.48503 * 109.47429 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47300 * 120.00460 * 17 15 13 20 20 H 1.48505 * 109.47140 * 240.00181 * 17 15 13 21 21 C 1.46500 * 120.00092 * 269.99949 * 12 9 8 22 22 C 1.53000 * 117.49914 * 182.56172 * 21 12 9 23 23 C 1.53001 * 117.49590 * 113.93819 * 21 12 9 24 24 H 1.09002 * 109.46719 * 254.15914 * 1 2 3 25 25 H 1.09000 * 109.46931 * 14.15826 * 1 2 3 26 26 H 1.09004 * 109.46727 * 134.16140 * 1 2 3 27 27 H 1.07993 * 119.98697 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.98790 * 179.76772 * 4 3 2 29 29 H 1.08002 * 120.00959 * 180.27755 * 5 4 3 30 30 H 0.97007 * 119.99939 * 184.50143 * 16 15 13 31 31 H 1.09000 * 115.55112 * 328.27114 * 21 12 9 32 32 H 1.08999 * 117.49955 * 359.97438 * 22 21 12 33 33 H 1.08995 * 117.49893 * 145.01797 * 22 21 12 34 34 H 1.09001 * 117.49422 * 214.97778 * 23 21 12 35 35 H 1.08998 * 117.50503 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 -0.0053 5 6 4.2726 0.0017 0.0000 6 6 3.5816 -1.1967 0.0054 7 17 4.4502 -2.6998 0.0127 8 6 2.1979 -1.1968 0.0053 9 16 1.3169 -2.7228 0.0115 10 8 0.1204 -2.4983 -0.7216 11 8 2.2588 -3.7312 -0.3280 12 7 0.8588 -3.0181 1.5752 13 6 -0.3451 -2.5552 2.0350 14 1 -0.3949 -2.0143 2.9685 15 6 -1.5016 -2.7810 1.3012 16 7 -1.5690 -3.8056 0.4779 17 14 -2.9622 -1.6307 1.4824 18 1 -2.6347 -0.5654 2.4638 19 1 -3.2732 -1.0146 0.1675 20 1 -4.1404 -2.3981 1.9604 21 6 1.7416 -3.7745 2.4667 22 6 1.2360 -4.0659 3.8810 23 6 2.3427 -3.0324 3.6620 24 1 -0.3633 -0.2805 0.9887 25 1 -0.3633 0.9965 -0.2514 26 1 -0.3633 -0.7160 -0.7373 27 1 1.6580 2.1326 0.0004 28 1 4.1197 2.1340 -0.0091 29 1 5.3526 0.0025 0.0004 30 1 -2.3512 -3.9265 -0.0830 31 1 2.3567 -4.5347 1.9852 32 1 0.2467 -3.6944 4.1484 33 1 1.5182 -5.0181 4.3302 34 1 3.3531 -3.3047 3.9671 35 1 2.0818 -1.9812 3.7849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334818398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:58 Heat of formation + Delta-G solvation = 1.146559 kcal Electronic energy + Delta-G solvation = -23570.240127 eV Core-core repulsion = 20109.335437 eV Total energy + Delta-G solvation = -3460.904691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.91158 -37.15524 -36.21939 -35.52380 -34.16156 -33.30772 -32.24555 -30.63526 -30.42624 -26.50358 -24.92454 -22.68322 -21.58893 -21.29807 -20.55641 -18.87310 -17.53232 -16.22683 -16.01016 -15.54155 -15.40406 -15.10502 -14.24346 -14.17258 -14.05044 -13.38735 -13.25104 -12.96695 -12.40001 -12.22933 -11.97909 -11.72869 -11.62957 -11.44061 -11.25106 -11.03848 -10.94543 -10.82104 -10.78483 -10.60094 -10.36534 -10.30977 -9.93176 -9.46426 -9.36771 -9.21692 -8.73799 -8.62529 -8.22152 -7.58402 -6.53581 -4.20276 1.23310 1.55575 1.95432 2.58502 3.16939 3.22833 3.27348 3.77902 4.09391 4.56957 4.71546 4.89805 5.05436 5.08152 5.30792 5.39429 5.55961 5.74842 5.78816 5.81082 5.84969 6.04686 6.08455 6.17426 6.32095 6.38611 6.45482 6.53732 6.56972 6.73572 6.81757 6.97852 7.03788 7.27216 7.37397 7.50378 8.18788 8.86877 9.30234 10.50426 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.008494 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.320600 B = 3295.723847 C = 4076.727311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.040 3.960 3 C -0.155 4.155 4 C -0.075 4.075 5 C -0.156 4.156 6 C 0.047 3.953 7 Cl -0.037 7.037 8 C -0.666 4.666 9 S 2.570 3.430 10 O -0.943 6.943 11 O -0.991 6.991 12 N -0.785 5.785 13 C -0.288 4.288 14 H 0.081 0.919 15 C 0.067 3.933 16 N -0.773 5.773 17 Si 0.899 3.101 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.280 1.280 21 C 0.100 3.900 22 C -0.163 4.163 23 C -0.213 4.213 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.280 0.720 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 6.764 2.566 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.038 3.962 3 C -0.174 4.174 4 C -0.093 4.093 5 C -0.175 4.175 6 C 0.019 3.981 7 Cl -0.007 7.007 8 C -0.742 4.742 9 S 2.667 3.333 10 O -0.931 6.931 11 O -0.980 6.980 12 N -0.608 5.608 13 C -0.433 4.433 14 H 0.099 0.901 15 C -0.151 4.151 16 N -0.408 5.408 17 Si 0.724 3.276 18 H -0.187 1.187 19 H -0.193 1.193 20 H -0.206 1.206 21 C -0.009 4.009 22 C -0.202 4.202 23 C -0.253 4.253 24 H 0.117 0.883 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.920 6.043 1.521 8.596 hybrid contribution -0.079 1.283 0.198 1.301 sum 5.842 7.326 1.720 9.526 Atomic orbital electron populations 1.21924 0.89746 1.04056 1.07432 1.19608 0.96558 0.90870 0.89122 1.21245 0.94277 0.97930 1.03927 1.21131 0.94376 0.97201 0.96595 1.21033 0.99885 0.91278 1.05290 1.20581 0.91554 0.88222 0.97764 1.98424 1.75950 1.30212 1.96138 1.32211 1.03871 1.25309 1.12793 1.10012 0.72600 0.73950 0.76711 1.93313 1.43880 1.84452 1.71449 1.93444 1.63567 1.56952 1.84052 1.52326 1.20821 1.57766 1.29849 1.18920 0.81417 1.33642 1.09369 0.90102 1.25589 0.98545 0.94438 0.96549 1.69910 1.30067 1.22030 1.18799 0.86360 0.81098 0.80963 0.79157 1.18662 1.19340 1.20630 1.21360 0.96389 0.96894 0.86211 1.23060 0.99453 0.98925 0.98747 1.23335 0.97226 0.98267 1.06449 0.88297 0.92411 0.85296 0.85684 0.85602 0.85421 0.90971 0.86534 0.87405 0.89787 0.89816 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 8.60 36.01 0.31 -3.13 16 2 C 0.04 0.78 5.87 -104.63 -0.61 0.16 16 3 C -0.16 -2.50 9.67 -39.58 -0.38 -2.88 16 4 C -0.07 -1.09 10.04 -39.59 -0.40 -1.49 16 5 C -0.16 -2.52 9.83 -39.55 -0.39 -2.91 16 6 C 0.05 0.92 6.31 -39.50 -0.25 0.67 16 7 Cl -0.04 -0.72 25.32 -51.86 -1.31 -2.03 16 8 C -0.67 -14.31 5.96 -39.55 -0.24 -14.55 16 9 S 2.57 62.91 5.05 -107.50 -0.54 62.36 16 10 O -0.94 -24.90 10.54 -57.17 -0.60 -25.51 16 11 O -0.99 -25.47 13.18 -57.17 -0.75 -26.23 16 12 N -0.79 -18.41 3.03 -53.42 -0.16 -18.58 16 13 C -0.29 -6.79 6.18 -15.06 -0.09 -6.89 16 14 H 0.08 1.82 7.52 -52.49 -0.39 1.42 16 15 C 0.07 1.64 3.86 -17.43 -0.07 1.58 16 16 N -0.77 -20.45 11.64 55.49 0.65 -19.81 16 17 Si 0.90 18.85 28.04 -169.99 -4.77 14.08 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 C 0.10 2.10 6.31 -67.93 -0.43 1.67 16 22 C -0.16 -2.93 9.82 -26.73 -0.26 -3.19 16 23 C -0.21 -3.74 10.37 -26.73 -0.28 -4.02 16 24 H 0.10 2.00 4.91 -51.93 -0.25 1.75 16 25 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 26 H 0.13 2.86 5.15 -51.93 -0.27 2.59 16 27 H 0.13 1.64 7.99 -52.49 -0.42 1.22 16 28 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.28 7.02 8.32 -40.82 -0.34 6.68 16 31 H 0.12 2.47 7.48 -51.93 -0.39 2.08 16 32 H 0.11 2.03 6.82 -51.93 -0.35 1.67 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -28.72 307.61 -9.69 -38.40 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -3.74 Total: 7.63 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: -3.09 Total: -34.97 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.48 Total: -38.38 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -1.36 Total: -51.73 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.77 Total: 14.08 kcal Atomic # 16 Polarization: 62.91 SS G_CDS: -0.54 Total: 62.36 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.31 Total: -2.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.72 -9.69 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334818398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.551 kcal (2) G-P(sol) polarization free energy of solvation -28.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds