Wall clock time and date at job start Fri Apr 10 2020 23:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38269 * 119.99386 * 2 1 4 4 C 1.38219 * 120.02359 * 180.25364 * 3 2 1 5 5 C 1.38231 * 120.01783 * 359.49319 * 4 3 2 6 6 C 1.38337 * 119.98169 * 0.25008 * 5 4 3 7 7 Cl 1.73609 * 120.00961 * 180.02562 * 6 5 4 8 8 C 1.38194 * 119.99502 * 179.74391 * 2 1 3 9 9 S 1.76198 * 120.00583 * 0.02562 * 8 2 1 10 10 O 1.42107 * 106.40142 * 32.45984 * 9 8 2 11 11 O 1.42103 * 106.40282 * 165.37881 * 9 8 2 12 12 N 1.65598 * 107.21924 * 278.91885 * 9 8 2 13 13 C 1.36938 * 119.99985 * 90.00157 * 12 9 8 14 14 H 1.07999 * 120.00084 * 229.24535 * 13 12 9 15 15 C 1.38814 * 120.00135 * 49.23803 * 13 12 9 16 16 N 1.31610 * 119.99739 * 25.28040 * 15 13 12 17 17 Si 1.86799 * 119.99908 * 205.28035 * 15 13 12 18 18 H 1.48503 * 109.47429 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47300 * 120.00460 * 17 15 13 20 20 H 1.48505 * 109.47140 * 240.00181 * 17 15 13 21 21 C 1.46500 * 120.00092 * 269.99949 * 12 9 8 22 22 C 1.53000 * 117.49914 * 182.56172 * 21 12 9 23 23 C 1.53001 * 117.49590 * 113.93819 * 21 12 9 24 24 H 1.09002 * 109.46719 * 254.15914 * 1 2 3 25 25 H 1.09000 * 109.46931 * 14.15826 * 1 2 3 26 26 H 1.09004 * 109.46727 * 134.16140 * 1 2 3 27 27 H 1.07993 * 119.98697 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.98790 * 179.76772 * 4 3 2 29 29 H 1.08002 * 120.00959 * 180.27755 * 5 4 3 30 30 H 0.97007 * 119.99939 * 184.50143 * 16 15 13 31 31 H 1.09000 * 115.55112 * 328.27114 * 21 12 9 32 32 H 1.08999 * 117.49955 * 359.97438 * 22 21 12 33 33 H 1.08995 * 117.49893 * 145.01797 * 22 21 12 34 34 H 1.09001 * 117.49422 * 214.97778 * 23 21 12 35 35 H 1.08998 * 117.50503 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 -0.0053 5 6 4.2726 0.0017 0.0000 6 6 3.5816 -1.1967 0.0054 7 17 4.4502 -2.6998 0.0127 8 6 2.1979 -1.1968 0.0053 9 16 1.3169 -2.7228 0.0115 10 8 0.1204 -2.4983 -0.7216 11 8 2.2588 -3.7312 -0.3280 12 7 0.8588 -3.0181 1.5752 13 6 -0.3451 -2.5552 2.0350 14 1 -0.3949 -2.0143 2.9685 15 6 -1.5016 -2.7810 1.3012 16 7 -1.5690 -3.8056 0.4779 17 14 -2.9622 -1.6307 1.4824 18 1 -2.6347 -0.5654 2.4638 19 1 -3.2732 -1.0146 0.1675 20 1 -4.1404 -2.3981 1.9604 21 6 1.7416 -3.7745 2.4667 22 6 1.2360 -4.0659 3.8810 23 6 2.3427 -3.0324 3.6620 24 1 -0.3633 -0.2805 0.9887 25 1 -0.3633 0.9965 -0.2514 26 1 -0.3633 -0.7160 -0.7373 27 1 1.6580 2.1326 0.0004 28 1 4.1197 2.1340 -0.0091 29 1 5.3526 0.0025 0.0004 30 1 -2.3512 -3.9265 -0.0830 31 1 2.3567 -4.5347 1.9852 32 1 0.2467 -3.6944 4.1484 33 1 1.5182 -5.0181 4.3302 34 1 3.3531 -3.3047 3.9671 35 1 2.0818 -1.9812 3.7849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334818398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:57 Heat of formation + Delta-G solvation = -15.765808 kcal Electronic energy + Delta-G solvation = -23570.973503 eV Core-core repulsion = 20109.335437 eV Total energy + Delta-G solvation = -3461.638066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.26408 -38.75020 -37.91063 -37.18591 -36.08614 -35.05430 -33.63689 -32.38687 -31.80539 -27.93271 -26.71335 -24.06370 -23.02394 -22.69064 -22.19423 -20.67231 -19.14675 -17.92359 -17.65160 -17.09278 -16.89479 -16.74805 -15.90992 -15.57714 -15.54732 -15.04168 -14.86150 -14.33515 -14.07482 -13.79515 -13.52781 -13.33609 -13.15154 -13.09541 -12.78718 -12.70755 -12.48529 -12.36173 -12.31258 -12.14443 -12.11409 -11.91923 -11.56651 -11.18580 -10.96049 -10.83754 -10.43014 -10.14049 -9.58808 -9.32287 -8.34946 -6.06008 -0.17955 0.18371 0.22278 1.14931 1.49055 1.52339 1.62310 2.33813 2.46489 2.88023 3.04694 3.23116 3.53868 3.70216 3.95880 4.04338 4.20414 4.28485 4.31181 4.40198 4.44129 4.54490 4.72028 4.83556 4.90373 4.93838 4.97374 5.09232 5.25227 5.27419 5.39091 5.51988 5.53781 5.60824 5.83377 5.89082 6.34783 7.08440 7.51511 8.69198 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.008494 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.320600 B = 3295.723847 C = 4076.727311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.018 3.982 3 C -0.148 4.148 4 C -0.055 4.055 5 C -0.150 4.150 6 C 0.025 3.975 7 Cl -0.050 7.050 8 C -0.694 4.694 9 S 2.578 3.422 10 O -0.973 6.973 11 O -1.017 7.017 12 N -0.798 5.798 13 C -0.290 4.290 14 H 0.090 0.910 15 C 0.032 3.968 16 N -0.825 5.825 17 Si 0.944 3.056 18 H -0.238 1.238 19 H -0.276 1.276 20 H -0.278 1.278 21 C 0.060 3.940 22 C -0.152 4.152 23 C -0.185 4.185 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.163 0.837 28 H 0.180 0.820 29 H 0.160 0.840 30 H 0.274 0.726 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 10.188 3.874 13.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.017 3.983 3 C -0.166 4.166 4 C -0.073 4.073 5 C -0.169 4.169 6 C -0.003 4.003 7 Cl -0.020 7.020 8 C -0.776 4.776 9 S 2.679 3.321 10 O -0.962 6.962 11 O -1.007 7.007 12 N -0.621 5.621 13 C -0.434 4.434 14 H 0.108 0.892 15 C -0.182 4.182 16 N -0.461 5.461 17 Si 0.766 3.234 18 H -0.160 1.160 19 H -0.201 1.201 20 H -0.204 1.204 21 C -0.048 4.048 22 C -0.191 4.191 23 C -0.225 4.225 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.181 0.819 28 H 0.197 0.803 29 H 0.177 0.823 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.448 9.423 2.876 12.351 hybrid contribution -0.374 0.335 -0.239 0.557 sum 7.073 9.759 2.637 12.338 Atomic orbital electron populations 1.21821 0.90451 1.05093 1.05815 1.19768 0.96455 0.91710 0.90372 1.21682 0.95287 0.97797 1.01883 1.21755 0.93914 0.98559 0.93039 1.21492 1.01600 0.90386 1.03449 1.20834 0.91113 0.89114 0.99274 1.98414 1.75865 1.31469 1.96301 1.31633 1.04848 1.24393 1.16682 1.08873 0.72164 0.74411 0.76617 1.93301 1.45349 1.85273 1.72282 1.93405 1.64039 1.58665 1.84548 1.52210 1.21482 1.58776 1.29660 1.19101 0.81474 1.33256 1.09609 0.89236 1.26350 1.00712 0.95087 0.96061 1.70008 1.30865 1.24306 1.20922 0.85669 0.78430 0.80045 0.79211 1.16045 1.20145 1.20421 1.21512 0.97891 0.98313 0.87127 1.23126 0.99329 1.00349 0.96267 1.23330 0.98335 0.97893 1.02942 0.89425 0.88937 0.88563 0.81948 0.80305 0.82280 0.91570 0.87951 0.88373 0.87268 0.87238 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.74 8.60 71.24 0.61 -6.12 16 2 C 0.02 0.69 5.87 -19.87 -0.12 0.57 16 3 C -0.15 -4.08 9.67 22.27 0.22 -3.87 16 4 C -0.05 -1.28 10.04 22.26 0.22 -1.06 16 5 C -0.15 -4.26 9.83 22.29 0.22 -4.04 16 6 C 0.02 0.94 6.31 22.32 0.14 1.08 16 7 Cl -0.05 -1.94 25.32 -2.72 -0.07 -2.01 16 8 C -0.69 -29.62 5.96 22.29 0.13 -29.49 16 9 S 2.58 130.83 5.05 -56.49 -0.29 130.55 16 10 O -0.97 -54.09 10.54 -128.00 -1.35 -55.44 16 11 O -1.02 -54.71 13.18 -128.00 -1.69 -56.39 16 12 N -0.80 -38.45 3.03 -322.94 -0.98 -39.43 16 13 C -0.29 -13.97 6.18 84.03 0.52 -13.45 16 14 H 0.09 4.03 7.52 -2.91 -0.02 4.01 16 15 C 0.03 1.60 3.86 84.86 0.33 1.93 16 16 N -0.82 -45.90 11.64 21.65 0.25 -45.64 16 17 Si 0.94 38.97 28.04 68.60 1.92 40.89 16 18 H -0.24 -8.74 7.11 99.48 0.71 -8.03 16 19 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 21 C 0.06 2.54 6.31 44.99 0.28 2.82 16 22 C -0.15 -5.34 9.82 30.60 0.30 -5.04 16 23 C -0.19 -6.26 10.37 30.60 0.32 -5.94 16 24 H 0.09 3.51 4.91 -2.39 -0.01 3.50 16 25 H 0.09 2.75 7.94 -2.39 -0.02 2.73 16 26 H 0.10 4.39 5.15 -2.38 -0.01 4.38 16 27 H 0.16 3.24 7.99 -2.91 -0.02 3.22 16 28 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 29 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.27 14.68 8.32 -92.70 -0.77 13.91 16 31 H 0.10 4.53 7.48 -2.39 -0.02 4.51 16 32 H 0.10 3.65 6.82 -2.39 -0.02 3.63 16 33 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -66.71 307.61 2.10 -64.61 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 1.12 Total: 25.48 kcal Atomic # 6 Polarization: -65.79 SS G_CDS: 3.18 Total: -62.61 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -0.73 Total: -85.07 kcal Atomic # 8 Polarization: -108.79 SS G_CDS: -3.04 Total: -111.83 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.92 Total: 40.89 kcal Atomic # 16 Polarization: 130.83 SS G_CDS: -0.29 Total: 130.55 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.07 Total: -2.01 kcal Total: -66.71 2.10 -64.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334818398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.843 kcal (2) G-P(sol) polarization free energy of solvation -66.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds