Wall clock time and date at job start Fri Apr 10 2020 23:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99880 * 2 1 4 4 H 1.48505 * 109.47133 * 269.99720 * 3 2 1 5 5 H 1.48499 * 109.47109 * 29.99365 * 3 2 1 6 6 H 1.48494 * 109.47297 * 149.99913 * 3 2 1 7 7 C 1.38801 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00050 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99678 * 180.02562 * 7 2 1 10 10 C 1.81004 * 100.00006 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47038 * 179.97438 * 10 9 7 12 12 O 1.21300 * 120.00370 * 5.52134 * 11 10 9 13 13 N 1.34776 * 119.99843 * 185.51572 * 11 10 9 14 14 C 1.47299 * 121.16184 * 354.19145 * 13 11 10 15 15 C 1.53537 * 107.57644 * 221.93405 * 14 13 11 16 16 O 1.42952 * 108.80289 * 301.79430 * 15 14 13 17 17 C 1.35962 * 117.77644 * 49.49301 * 16 15 14 18 18 C 1.38863 * 119.63717 * 159.85539 * 17 16 15 19 19 F 1.35104 * 120.00125 * 359.81440 * 18 17 16 20 20 C 1.38542 * 120.00234 * 179.79507 * 18 17 16 21 21 F 1.35101 * 119.89166 * 179.97438 * 20 18 17 22 22 C 1.38465 * 120.21845 * 359.94745 * 20 18 17 23 23 C 1.38250 * 120.04383 * 0.32511 * 22 20 18 24 24 C 1.38607 * 119.95064 * 359.50785 * 23 22 20 25 25 H 0.96994 * 120.00044 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46882 * 59.99549 * 10 9 7 27 27 H 1.08997 * 109.46866 * 299.99755 * 10 9 7 28 28 H 1.08993 * 109.84165 * 102.40816 * 14 13 11 29 29 H 1.09002 * 109.83005 * 341.44560 * 14 13 11 30 30 H 1.08995 * 109.58017 * 182.00073 * 15 14 13 31 31 H 1.09001 * 109.58117 * 61.59095 * 15 14 13 32 32 H 1.07995 * 119.97212 * 180.02562 * 22 20 18 33 33 H 1.08004 * 120.01894 * 179.76263 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3434 -2.3009 0.1020 13 7 6.0466 -4.4893 -0.1116 14 6 5.1386 -5.6490 -0.1084 15 6 5.7831 -6.7402 0.7584 16 8 7.0668 -7.0603 0.2171 17 6 7.9104 -6.0316 -0.0638 18 6 9.2726 -6.2736 -0.1828 19 9 9.7535 -7.5251 -0.0160 20 6 10.1385 -5.2318 -0.4730 21 9 11.4635 -5.4697 -0.5878 22 6 9.6505 -3.9477 -0.6463 23 6 8.2960 -3.6996 -0.5235 24 6 7.4253 -4.7392 -0.2367 25 1 -0.4850 0.8400 -0.0004 26 1 3.6440 -3.4313 -0.8892 27 1 3.6434 -3.4317 0.8907 28 1 5.0039 -6.0162 -1.1258 29 1 4.1749 -5.3630 0.3130 30 1 5.1529 -7.6295 0.7545 31 1 5.8976 -6.3756 1.7792 32 1 10.3290 -3.1386 -0.8728 33 1 7.9162 -2.6971 -0.6549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334882192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:04 Heat of formation + Delta-G solvation = -113.557304 kcal Electronic energy + Delta-G solvation = -23397.000062 eV Core-core repulsion = 19379.324758 eV Total energy + Delta-G solvation = -4017.675304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.58241 -48.65081 -41.62158 -39.23324 -37.68172 -35.65059 -32.57232 -31.39827 -30.86911 -29.75374 -27.91789 -25.75887 -24.91810 -23.59861 -22.12162 -20.15179 -18.91763 -18.24830 -18.01609 -17.58429 -16.83300 -16.73676 -16.28706 -16.20880 -15.64004 -15.32447 -15.28090 -15.09384 -14.92372 -14.37208 -14.18192 -13.83583 -13.74213 -13.31637 -13.04244 -12.89738 -12.66755 -12.32275 -11.89556 -11.77554 -11.40435 -11.28299 -11.12158 -10.81506 -10.30801 -9.98473 -9.67586 -9.13344 -8.75911 -8.70292 -8.15757 -7.10409 -6.41628 -4.16256 0.62232 0.74190 2.10163 2.37561 2.59978 2.82515 3.19107 3.23029 3.38947 3.40474 3.67798 3.96812 4.09430 4.19884 4.23736 4.45388 4.50224 4.55719 4.73870 4.79763 4.85198 4.97366 5.07682 5.15915 5.25894 5.43804 5.59722 5.60902 5.70480 5.96876 6.11480 6.39014 6.81397 6.87764 7.80816 7.87639 8.27877 9.03688 10.67385 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.003315 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.952920 B = 8445.436960 C = 9410.042731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.098 3.902 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.525 4.525 8 H 0.090 0.910 9 S -0.134 6.134 10 C -0.124 4.124 11 C 0.539 3.461 12 O -0.487 6.487 13 N -0.560 5.560 14 C 0.062 3.938 15 C 0.047 3.953 16 O -0.300 6.300 17 C 0.082 3.918 18 C 0.059 3.941 19 F -0.120 7.120 20 C 0.073 3.927 21 F -0.127 7.127 22 C -0.129 4.129 23 C -0.097 4.097 24 C 0.110 3.890 25 H 0.272 0.728 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.245 -13.470 -0.190 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.112 4.112 3 Si 0.680 3.320 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.673 4.673 8 H 0.108 0.892 9 S 0.092 5.908 10 C -0.274 4.274 11 C 0.329 3.671 12 O -0.360 6.360 13 N -0.286 5.286 14 C -0.061 4.061 15 C -0.028 4.028 16 O -0.213 6.213 17 C 0.033 3.967 18 C 0.038 3.962 19 F -0.099 7.099 20 C 0.052 3.948 21 F -0.105 7.105 22 C -0.148 4.148 23 C -0.117 4.117 24 C 0.015 3.985 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.170 0.830 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 15.178 -12.195 -0.132 19.471 hybrid contribution -0.737 -0.589 0.043 0.944 sum 14.441 -12.784 -0.089 19.287 Atomic orbital electron populations 1.69925 1.05917 1.27974 1.47449 1.24703 0.94459 0.98996 0.93008 0.86753 0.81880 0.83306 0.80024 1.19100 1.19760 1.15909 1.22252 0.87834 0.97651 1.59528 0.89222 1.84846 1.09886 0.98600 1.97459 1.23339 0.92217 1.05597 1.06239 1.20586 0.91378 0.80473 0.74619 1.90556 1.57979 1.41758 1.45735 1.45909 1.03919 1.07664 1.71141 1.22821 0.94727 0.85713 1.02835 1.23442 0.82315 1.00215 0.96855 1.86101 1.26292 1.30000 1.78930 1.18049 0.88393 0.87059 1.03151 1.16578 0.88606 0.80448 1.10582 1.91519 1.87939 1.37039 1.93403 1.17318 0.77732 0.93120 1.06672 1.91525 1.30138 1.95111 1.93739 1.21039 0.96386 0.94619 1.02796 1.21833 0.91239 1.01574 0.97012 1.17785 0.84572 0.92652 1.03538 0.91757 0.87893 0.87745 0.88678 0.86415 0.85135 0.90487 0.82968 0.79953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 13.97 55.49 0.78 -24.51 16 2 C 0.10 2.71 5.50 -17.43 -0.10 2.61 16 3 Si 0.86 20.61 27.74 -169.99 -4.72 15.89 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.24 -5.61 6.74 56.52 0.38 -5.23 16 7 C -0.53 -14.11 10.04 30.94 0.31 -13.80 16 8 H 0.09 2.50 8.03 -52.49 -0.42 2.08 16 9 S -0.13 -3.10 18.55 -107.50 -1.99 -5.09 16 10 C -0.12 -2.08 4.63 36.00 0.17 -1.91 16 11 C 0.54 8.47 7.61 -10.99 -0.08 8.39 16 12 O -0.49 -8.96 12.74 5.54 0.07 -8.89 16 13 N -0.56 -7.07 3.01 -112.32 -0.34 -7.41 16 14 C 0.06 0.53 6.40 -3.33 -0.02 0.51 16 15 C 0.05 0.37 7.18 37.44 0.27 0.64 16 16 O -0.30 -3.39 10.17 -19.62 -0.20 -3.59 16 17 C 0.08 1.03 6.52 -39.02 -0.25 0.78 16 18 C 0.06 0.76 7.31 -39.24 -0.29 0.47 16 19 F -0.12 -1.63 17.00 2.25 0.04 -1.59 16 20 C 0.07 0.88 7.30 -39.39 -0.29 0.59 16 21 F -0.13 -1.55 17.17 2.25 0.04 -1.51 16 22 C -0.13 -1.42 10.02 -39.49 -0.40 -1.82 16 23 C -0.10 -1.24 8.94 -39.44 -0.35 -1.59 16 24 C 0.11 1.43 6.33 -83.33 -0.53 0.90 16 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.10 1.57 8.08 -51.92 -0.42 1.15 16 27 H 0.10 1.58 7.63 -51.92 -0.40 1.18 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.12 0.84 6.44 -51.93 -0.33 0.50 16 30 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.18 2.61 5.15 -52.59 -0.27 2.34 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -31.74 305.21 -5.97 -37.71 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -2.69 Total: -1.39 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.56 Total: -4.23 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.44 Total: -31.91 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.13 Total: -12.48 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.72 Total: 15.89 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -1.99 Total: -5.09 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.74 -5.97 -37.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334882192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.845 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds