Wall clock time and date at job start Fri Apr 10 2020 23:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99880 * 2 1 4 4 H 1.48505 * 109.47133 * 269.99720 * 3 2 1 5 5 H 1.48499 * 109.47109 * 29.99365 * 3 2 1 6 6 H 1.48494 * 109.47297 * 149.99913 * 3 2 1 7 7 C 1.38801 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00050 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99678 * 180.02562 * 7 2 1 10 10 C 1.81004 * 100.00006 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47038 * 179.97438 * 10 9 7 12 12 O 1.21300 * 120.00370 * 5.52134 * 11 10 9 13 13 N 1.34776 * 119.99843 * 185.51572 * 11 10 9 14 14 C 1.47299 * 121.16184 * 354.19145 * 13 11 10 15 15 C 1.53537 * 107.57644 * 221.93405 * 14 13 11 16 16 O 1.42952 * 108.80289 * 301.79430 * 15 14 13 17 17 C 1.35962 * 117.77644 * 49.49301 * 16 15 14 18 18 C 1.38863 * 119.63717 * 159.85539 * 17 16 15 19 19 F 1.35104 * 120.00125 * 359.81440 * 18 17 16 20 20 C 1.38542 * 120.00234 * 179.79507 * 18 17 16 21 21 F 1.35101 * 119.89166 * 179.97438 * 20 18 17 22 22 C 1.38465 * 120.21845 * 359.94745 * 20 18 17 23 23 C 1.38250 * 120.04383 * 0.32511 * 22 20 18 24 24 C 1.38607 * 119.95064 * 359.50785 * 23 22 20 25 25 H 0.96994 * 120.00044 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46882 * 59.99549 * 10 9 7 27 27 H 1.08997 * 109.46866 * 299.99755 * 10 9 7 28 28 H 1.08993 * 109.84165 * 102.40816 * 14 13 11 29 29 H 1.09002 * 109.83005 * 341.44560 * 14 13 11 30 30 H 1.08995 * 109.58017 * 182.00073 * 15 14 13 31 31 H 1.09001 * 109.58117 * 61.59095 * 15 14 13 32 32 H 1.07995 * 119.97212 * 180.02562 * 22 20 18 33 33 H 1.08004 * 120.01894 * 179.76263 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3434 -2.3009 0.1020 13 7 6.0466 -4.4893 -0.1116 14 6 5.1386 -5.6490 -0.1084 15 6 5.7831 -6.7402 0.7584 16 8 7.0668 -7.0603 0.2171 17 6 7.9104 -6.0316 -0.0638 18 6 9.2726 -6.2736 -0.1828 19 9 9.7535 -7.5251 -0.0160 20 6 10.1385 -5.2318 -0.4730 21 9 11.4635 -5.4697 -0.5878 22 6 9.6505 -3.9477 -0.6463 23 6 8.2960 -3.6996 -0.5235 24 6 7.4253 -4.7392 -0.2367 25 1 -0.4850 0.8400 -0.0004 26 1 3.6440 -3.4313 -0.8892 27 1 3.6434 -3.4317 0.8907 28 1 5.0039 -6.0162 -1.1258 29 1 4.1749 -5.3630 0.3130 30 1 5.1529 -7.6295 0.7545 31 1 5.8976 -6.3756 1.7792 32 1 10.3290 -3.1386 -0.8728 33 1 7.9162 -2.6971 -0.6549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334882192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:02 Heat of formation + Delta-G solvation = -133.174486 kcal Electronic energy + Delta-G solvation = -23397.850726 eV Core-core repulsion = 19379.324758 eV Total energy + Delta-G solvation = -4018.525968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -50.56635 -49.63997 -42.58890 -40.32176 -38.58487 -36.68659 -34.66572 -32.33430 -31.89513 -30.78655 -28.95628 -27.83813 -25.74157 -24.60641 -23.05209 -21.23829 -19.94924 -19.67926 -19.00912 -18.92027 -17.82384 -17.70675 -17.33989 -17.24968 -17.10384 -16.67755 -16.26009 -16.14709 -15.88144 -15.82533 -15.36821 -15.06013 -14.83633 -14.69071 -14.32249 -13.96373 -13.58917 -13.48006 -13.33072 -13.02533 -12.79889 -12.69827 -12.57191 -12.07608 -11.87843 -11.27338 -11.16616 -10.87319 -10.55305 -9.70305 -9.15032 -8.99304 -8.51046 -6.22410 -0.36827 -0.19704 0.82331 1.22274 1.30220 1.32771 1.49604 1.70571 1.78895 2.22511 2.24507 2.60903 2.77651 2.87975 3.07463 3.22989 3.39341 3.57455 3.65190 3.87551 3.91863 4.02463 4.12551 4.27999 4.38252 4.52692 4.62642 4.67112 4.71568 4.99671 5.16149 5.47829 5.71121 5.80131 5.97782 6.13221 6.70264 6.94397 8.60969 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.003315 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.952920 B = 8445.436960 C = 9410.042731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.234 1.234 7 C -0.527 4.527 8 H 0.068 0.932 9 S -0.167 6.167 10 C -0.108 4.108 11 C 0.543 3.457 12 O -0.521 6.521 13 N -0.553 5.553 14 C 0.053 3.947 15 C 0.045 3.955 16 O -0.309 6.309 17 C 0.089 3.911 18 C 0.045 3.955 19 F -0.127 7.127 20 C 0.074 3.926 21 F -0.128 7.128 22 C -0.118 4.118 23 C -0.104 4.104 24 C 0.097 3.903 25 H 0.276 0.724 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.170 0.830 31 H 0.079 0.921 32 H 0.177 0.823 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.078 -14.421 -0.152 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.158 1.158 7 C -0.675 4.675 8 H 0.086 0.914 9 S 0.060 5.940 10 C -0.258 4.258 11 C 0.333 3.667 12 O -0.397 6.397 13 N -0.279 5.279 14 C -0.068 4.068 15 C -0.029 4.029 16 O -0.223 6.223 17 C 0.040 3.960 18 C 0.024 3.976 19 F -0.106 7.106 20 C 0.053 3.947 21 F -0.106 7.106 22 C -0.137 4.137 23 C -0.124 4.124 24 C 0.002 3.998 25 H 0.086 0.914 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.187 0.813 31 H 0.097 0.903 32 H 0.194 0.806 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 16.011 -13.192 -0.093 20.746 hybrid contribution -0.958 -0.494 0.027 1.079 sum 15.053 -13.686 -0.066 20.344 Atomic orbital electron populations 1.70007 1.07327 1.29015 1.49067 1.25522 0.95195 1.02184 0.92963 0.85922 0.80814 0.79833 0.80179 1.18756 1.18747 1.15750 1.22434 0.90036 0.96786 1.58234 0.91424 1.84760 1.06707 1.04938 1.97610 1.23288 0.93650 1.00650 1.08252 1.20269 0.90487 0.81247 0.74688 1.90562 1.58378 1.43147 1.47580 1.45825 1.04474 1.07600 1.69953 1.23207 0.94763 0.84565 1.04273 1.23792 0.81139 1.01620 0.96391 1.86103 1.27449 1.29837 1.78930 1.18002 0.88512 0.87010 1.02516 1.16764 0.89094 0.80396 1.11354 1.91498 1.88033 1.37476 1.93549 1.17390 0.77601 0.93283 1.06435 1.91523 1.30235 1.95141 1.93728 1.21203 0.96057 0.94900 1.01533 1.21773 0.92026 1.01036 0.97534 1.17857 0.84681 0.92923 1.04377 0.91405 0.85951 0.85655 0.87183 0.84606 0.81305 0.90308 0.80555 0.81263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.34 13.97 21.65 0.30 -53.04 16 2 C 0.05 2.61 5.50 84.86 0.47 3.07 16 3 Si 0.91 42.45 27.74 68.60 1.90 44.36 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.23 -10.76 6.74 99.48 0.67 -10.09 16 7 C -0.53 -28.36 10.04 67.95 0.68 -27.67 16 8 H 0.07 3.81 8.03 -2.91 -0.02 3.78 16 9 S -0.17 -7.57 18.55 -56.49 -1.05 -8.62 16 10 C -0.11 -3.42 4.63 71.23 0.33 -3.09 16 11 C 0.54 16.21 7.61 87.66 0.67 16.87 16 12 O -0.52 -18.78 12.74 -3.09 -0.04 -18.82 16 13 N -0.55 -12.81 3.01 -627.66 -1.89 -14.71 16 14 C 0.05 0.74 6.40 86.41 0.55 1.30 16 15 C 0.05 0.55 7.18 72.16 0.52 1.07 16 16 O -0.31 -6.27 10.17 -93.12 -0.95 -7.22 16 17 C 0.09 2.08 6.52 22.63 0.15 2.23 16 18 C 0.05 1.11 7.31 22.49 0.16 1.27 16 19 F -0.13 -3.30 17.00 44.97 0.76 -2.54 16 20 C 0.07 1.68 7.30 22.40 0.16 1.85 16 21 F -0.13 -2.95 17.17 44.97 0.77 -2.18 16 22 C -0.12 -2.43 10.02 22.33 0.22 -2.20 16 23 C -0.10 -2.55 8.94 22.36 0.20 -2.35 16 24 C 0.10 2.38 6.33 38.02 0.24 2.62 16 25 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 26 H 0.12 3.44 8.08 -2.40 -0.02 3.42 16 27 H 0.13 3.47 7.63 -2.40 -0.02 3.45 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.14 1.43 6.44 -2.39 -0.02 1.41 16 30 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.17 4.78 5.15 -4.57 -0.02 4.75 16 Total: -1.00 -68.80 305.21 5.30 -63.50 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.13 Total: 4.31 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 4.36 Total: -5.04 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -1.59 Total: -67.75 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.99 Total: -26.04 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 1.54 Total: -4.72 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.90 Total: 44.36 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.05 Total: -8.62 kcal Total: -68.80 5.30 -63.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334882192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.674 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds