Wall clock time and date at job start Fri Apr 10 2020 23:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47435 * 239.99612 * 3 2 1 5 5 H 1.48504 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47268 * 119.99848 * 3 2 1 7 7 C 1.39943 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99899 * 191.63492 * 7 2 1 9 9 C 1.41398 * 120.00225 * 11.62934 * 7 2 1 10 10 C 1.40744 * 120.23969 * 208.79958 * 9 7 2 11 11 C 1.37609 * 119.77120 * 179.77041 * 10 9 7 12 12 C 1.38640 * 120.25846 * 0.50685 * 11 10 9 13 13 S 1.76202 * 119.75259 * 179.76379 * 12 11 10 14 14 O 1.42100 * 106.40144 * 1.81709 * 13 12 11 15 15 O 1.42098 * 106.40279 * 228.89443 * 13 12 11 16 16 N 1.65602 * 107.21384 * 115.35378 * 13 12 11 17 17 C 1.46500 * 120.00234 * 295.87427 * 16 13 12 18 18 C 1.53776 * 113.61345 * 117.77141 * 17 16 13 19 19 C 1.53946 * 87.02008 * 89.22887 * 18 17 16 20 20 C 1.53778 * 87.11289 * 25.36448 * 19 18 17 21 21 C 1.38731 * 120.49035 * 359.48944 * 12 11 10 22 22 Cl 1.73593 * 119.89006 * 180.27507 * 21 12 11 23 23 C 1.37759 * 120.21804 * 0.25408 * 21 12 11 24 24 H 0.96998 * 120.00349 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.11407 * 0.04318 * 10 9 7 26 26 H 1.07992 * 119.87111 * 180.27399 * 11 10 9 27 27 H 0.97002 * 119.99496 * 115.88083 * 16 13 12 28 28 H 1.08998 * 112.84782 * 346.57536 * 17 16 13 29 29 H 1.08997 * 113.61570 * 203.75355 * 18 17 16 30 30 H 1.09003 * 113.61226 * 334.65067 * 18 17 16 31 31 H 1.09002 * 113.54095 * 270.80765 * 19 18 17 32 32 H 1.09007 * 113.66729 * 139.93100 * 19 18 17 33 33 H 1.08999 * 113.61665 * 220.09155 * 20 19 18 34 34 H 1.08994 * 113.69334 * 89.19537 * 20 19 18 35 35 H 1.08010 * 120.13060 * 179.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0713 -1.2217 0.1881 9 6 1.3227 -2.4238 -0.2479 10 6 1.7903 -3.6289 0.3089 11 6 1.1132 -4.8020 0.0658 12 6 -0.0198 -4.8019 -0.7331 13 16 -0.8728 -6.3127 -1.0408 14 8 -0.1861 -7.3177 -0.3076 15 8 -1.0782 -6.3787 -2.4453 16 7 -2.3738 -6.1765 -0.3546 17 6 -2.5052 -6.0341 1.0976 18 6 -3.1543 -4.7088 1.5303 19 6 -4.5095 -5.4318 1.4271 20 6 -3.7422 -6.7409 1.6765 21 6 -0.4902 -3.6204 -1.2875 22 17 -1.9145 -3.6372 -2.2797 23 6 0.1691 -2.4338 -1.0528 24 1 -0.4850 0.8400 -0.0004 25 1 2.6748 -3.6322 0.9285 26 1 1.4680 -5.7268 0.4959 27 1 -3.1660 -6.1912 -0.9142 28 1 -1.5823 -6.2628 1.6305 29 1 -2.8964 -4.4073 2.5455 30 1 -3.0309 -3.9048 0.8046 31 1 -4.9606 -5.3718 0.4366 32 1 -5.2048 -5.1742 2.2261 33 1 -4.0928 -7.5751 1.0687 34 1 -3.6448 -6.9973 2.7313 35 1 -0.1982 -1.5148 -1.4855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334901876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:07 Heat of formation + Delta-G solvation = -55.130267 kcal Electronic energy + Delta-G solvation = -22311.426909 eV Core-core repulsion = 18848.081872 eV Total energy + Delta-G solvation = -3463.345037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.82877 -37.86572 -36.49109 -35.62051 -35.12650 -34.07522 -32.26249 -30.31668 -29.47452 -26.02807 -25.42435 -24.65559 -21.77601 -21.33785 -19.53607 -18.91449 -17.82744 -17.31828 -16.60063 -15.84111 -15.53439 -14.96588 -14.63157 -14.50554 -13.88927 -13.72185 -13.39273 -12.84433 -12.74424 -12.49118 -12.40995 -12.21961 -11.64233 -11.62042 -11.48765 -11.39360 -11.30985 -11.18790 -10.69945 -10.59234 -10.55750 -10.49889 -10.39477 -10.09233 -10.06705 -9.68819 -9.59973 -8.99627 -8.07351 -7.73184 -7.21240 -4.95696 1.21937 2.02779 2.63758 2.83226 2.85219 2.87824 2.98953 3.59589 3.65405 4.10484 4.47003 4.69348 4.80874 5.01414 5.08419 5.14085 5.30084 5.49752 5.77738 5.85193 5.92057 5.98021 6.07677 6.23206 6.35085 6.38617 6.55916 6.64465 6.68848 6.80175 6.98953 7.15973 7.30493 7.38949 7.57231 7.76084 8.08243 8.34751 8.39782 9.68877 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.005007 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.780585 B = 5590.800116 C = 5950.133808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.069 3.931 3 Si 0.922 3.078 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.091 0.909 9 C 0.145 3.855 10 C -0.233 4.233 11 C 0.008 3.992 12 C -0.786 4.786 13 S 2.698 3.302 14 O -0.986 6.986 15 O -0.970 6.970 16 N -1.101 6.101 17 C 0.135 3.865 18 C -0.156 4.156 19 C -0.141 4.141 20 C -0.146 4.146 21 C 0.077 3.923 22 Cl -0.102 7.102 23 C -0.163 4.163 24 H 0.292 0.708 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.410 0.590 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 -3.516 3.185 7.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.153 4.153 3 Si 0.745 3.255 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.455 4.455 8 H 0.109 0.891 9 C 0.141 3.859 10 C -0.254 4.254 11 C -0.013 4.013 12 C -0.881 4.881 13 S 2.794 3.206 14 O -0.976 6.976 15 O -0.960 6.960 16 N -0.856 5.856 17 C 0.027 3.973 18 C -0.195 4.195 19 C -0.178 4.178 20 C -0.186 4.186 21 C 0.048 3.952 22 Cl -0.074 7.074 23 C -0.184 4.184 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.135 0.865 27 H 0.244 0.756 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.611 -4.121 2.758 7.488 hybrid contribution -0.145 1.622 0.034 1.629 sum -5.756 -2.499 2.792 6.868 Atomic orbital electron populations 1.69757 1.07804 1.30718 1.30651 1.26156 0.95052 1.02217 0.91905 0.86108 0.80056 0.78860 0.80473 1.18302 1.19813 1.18480 1.19921 0.96818 0.90300 1.38503 0.89057 1.17734 0.89724 0.92516 0.85971 1.21155 1.03945 0.93011 1.07265 1.20211 0.91437 0.97686 0.91917 1.29103 1.16724 1.16421 1.25873 1.01226 0.72139 0.74367 0.72888 1.93478 1.73156 1.57031 1.73917 1.93553 1.85151 1.87648 1.29681 1.55419 1.25280 1.91054 1.13826 1.21485 0.99148 0.96494 0.80221 1.23423 0.95759 0.97874 1.02470 1.22863 0.96813 0.96504 1.01622 1.23271 0.96519 0.97380 1.01400 1.20029 0.87768 0.94530 0.92839 1.98314 1.40416 1.98721 1.69914 1.21299 0.99051 0.95464 1.02561 0.89700 0.87510 0.86487 0.75640 0.88170 0.89458 0.90124 0.90425 0.91710 0.91082 0.89283 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.47 10.89 55.55 0.61 -16.87 16 2 C 0.07 1.51 5.24 -17.34 -0.09 1.42 16 3 Si 0.92 16.38 29.57 -169.99 -5.03 11.35 16 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 6 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 7 C -0.43 -9.96 9.06 -37.74 -0.34 -10.30 16 8 H 0.09 1.99 7.87 -52.49 -0.41 1.57 16 9 C 0.14 3.49 5.55 -106.83 -0.59 2.89 16 10 C -0.23 -5.21 9.80 -38.86 -0.38 -5.59 16 11 C 0.01 0.17 9.52 -39.66 -0.38 -0.21 16 12 C -0.79 -17.02 5.89 -39.25 -0.23 -17.26 16 13 S 2.70 52.76 5.01 -107.50 -0.54 52.22 16 14 O -0.99 -20.70 16.51 -57.17 -0.94 -21.64 16 15 O -0.97 -20.97 16.51 -57.17 -0.94 -21.91 16 16 N -1.10 -17.23 5.45 -4.20 -0.02 -17.25 16 17 C 0.14 1.92 4.49 -67.12 -0.30 1.62 16 18 C -0.16 -2.13 7.89 -25.83 -0.20 -2.33 16 19 C -0.14 -1.58 7.91 -25.83 -0.20 -1.78 16 20 C -0.15 -1.64 7.87 -25.92 -0.20 -1.84 16 21 C 0.08 1.73 6.29 -39.57 -0.25 1.48 16 22 Cl -0.10 -2.06 26.40 -51.86 -1.37 -3.43 16 23 C -0.16 -3.92 8.43 -38.84 -0.33 -4.25 16 24 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 25 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 26 H 0.12 2.29 7.31 -52.49 -0.38 1.91 16 27 H 0.41 5.65 8.79 -34.47 -0.30 5.35 16 28 H 0.10 1.47 7.80 -51.93 -0.41 1.07 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.08 0.86 8.11 -51.93 -0.42 0.43 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.13 3.31 6.26 -52.48 -0.33 2.98 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -27.49 322.80 -10.81 -38.30 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -3.92 Total: 10.53 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: -3.50 Total: -36.16 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.58 Total: -34.12 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -1.89 Total: -43.56 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Atomic # 16 Polarization: 52.76 SS G_CDS: -0.54 Total: 52.22 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -1.37 Total: -3.43 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.49 -10.81 -38.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334901876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.831 kcal (2) G-P(sol) polarization free energy of solvation -27.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds