Wall clock time and date at job start Fri Apr 10 2020 23:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48499 * 109.47508 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47174 * 120.00151 * 3 2 1 7 7 C 1.39897 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00134 * 175.39382 * 7 2 1 9 9 C 1.41152 * 119.99785 * 355.39377 * 7 2 1 10 10 C 1.40894 * 120.15731 * 214.82631 * 9 7 2 11 11 C 1.36373 * 119.84632 * 179.73769 * 10 9 7 12 12 C 1.39464 * 120.18338 * 0.54355 * 11 10 9 13 13 N 1.39262 * 119.84483 * 179.75459 * 12 11 10 14 14 C 1.34776 * 119.99409 * 34.82650 * 13 12 11 15 15 O 1.21276 * 120.00528 * 355.38235 * 14 13 12 16 16 C 1.50707 * 119.99658 * 175.65793 * 14 13 12 17 17 C 1.53780 * 113.61407 * 279.13435 * 16 14 13 18 18 C 1.53957 * 87.02108 * 220.04818 * 17 16 14 19 19 F 1.39897 * 113.53942 * 270.81329 * 18 17 16 20 20 F 1.39901 * 113.66342 * 139.93487 * 18 17 16 21 21 C 1.53778 * 113.61304 * 181.53082 * 16 14 13 22 22 C 1.39588 * 120.31672 * 359.47936 * 12 11 10 23 23 Cl 1.73597 * 119.92506 * 180.25822 * 22 12 11 24 24 C 1.36475 * 120.14631 * 0.22961 * 22 12 11 25 25 H 0.97003 * 120.00263 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.07323 * 0.02684 * 10 9 7 27 27 H 1.08007 * 119.91046 * 180.29330 * 11 10 9 28 28 H 0.96994 * 120.00294 * 214.82663 * 13 12 11 29 29 H 1.08995 * 112.85118 * 50.33634 * 16 14 13 30 30 H 1.09003 * 113.61655 * 334.57120 * 17 16 14 31 31 H 1.08996 * 113.61164 * 105.47176 * 17 16 14 32 32 H 1.08999 * 113.61786 * 254.53086 * 21 16 14 33 33 H 1.08996 * 113.62025 * 25.34606 * 21 16 14 34 34 H 1.07998 * 120.08978 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0857 -1.2129 -0.0757 9 6 1.3060 -2.4320 0.0971 10 6 1.8668 -3.5172 0.7992 11 6 1.1804 -4.6917 0.8941 12 6 -0.0690 -4.8246 0.2888 13 7 -0.7616 -6.0289 0.3859 14 6 -0.6739 -6.7679 1.5095 15 8 0.0726 -6.4274 2.4026 16 6 -1.4990 -8.0208 1.6537 17 6 -2.9529 -7.7554 2.0786 18 6 -2.8281 -8.9916 2.9878 19 9 -3.1815 -10.1883 2.3552 20 9 -3.4395 -8.8344 4.2363 21 6 -1.3131 -8.7285 3.0062 22 6 -0.6313 -3.7543 -0.4090 23 17 -2.1901 -3.9287 -1.1528 24 6 0.0415 -2.5710 -0.5072 25 1 -0.4851 0.8400 0.0004 26 1 2.8361 -3.4175 1.2650 27 1 1.6073 -5.5227 1.4360 28 1 -1.3070 -6.3358 -0.3552 29 1 -1.4095 -8.6875 0.7961 30 1 -3.0844 -6.8221 2.6262 31 1 -3.6734 -7.8779 1.2700 32 1 -0.7117 -9.6355 2.9454 33 1 -0.9940 -8.0622 3.8076 34 1 -0.3942 -1.7437 -1.0477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335038576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:10 Heat of formation + Delta-G solvation = -104.580227 kcal Electronic energy + Delta-G solvation = -23187.251097 eV Core-core repulsion = 19167.921363 eV Total energy + Delta-G solvation = -4019.329735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -48.99836 -47.32829 -40.24260 -38.10159 -36.69370 -35.59110 -34.55795 -33.08961 -29.54110 -29.29173 -26.67708 -26.47068 -24.68728 -22.10804 -21.27857 -20.52840 -19.65695 -18.16889 -17.55150 -16.98821 -16.68311 -16.38722 -16.23955 -15.42509 -15.14201 -14.44143 -14.20351 -14.16371 -14.05573 -13.61673 -13.37755 -13.01313 -12.83418 -12.65097 -12.43526 -12.08043 -11.81641 -11.65336 -11.59645 -11.45641 -11.17105 -10.99721 -10.68837 -10.65473 -10.39909 -10.08367 -9.83896 -9.60090 -9.27449 -9.06792 -7.62691 -7.10358 -6.78379 -4.53806 2.24653 2.75082 2.88175 3.02182 3.04075 3.06929 3.12377 3.21337 3.44487 3.61654 3.86397 4.01839 4.14858 4.31161 4.50149 5.02867 5.04310 5.20149 5.25550 5.36153 5.39565 5.50863 5.90686 6.12000 6.44118 6.55927 6.80799 6.91865 7.08081 7.24084 7.49305 7.57166 7.78490 7.98709 8.05094 8.35803 8.53165 8.71000 8.73581 10.11769 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.025089 B = 0.003183 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.750381 B = 8795.244883 C = 9246.716148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.110 3.890 10 C -0.203 4.203 11 C -0.073 4.073 12 C 0.006 3.994 13 N -0.643 5.643 14 C 0.515 3.485 15 O -0.525 6.525 16 C -0.132 4.132 17 C -0.148 4.148 18 C 0.254 3.746 19 F -0.180 7.180 20 F -0.188 7.188 21 C -0.140 4.140 22 C -0.020 4.020 23 Cl -0.119 7.119 24 C -0.137 4.137 25 H 0.283 0.717 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.400 0.600 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -11.882 0.430 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.147 4.147 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.106 3.894 10 C -0.223 4.223 11 C -0.093 4.093 12 C -0.087 4.087 13 N -0.286 5.286 14 C 0.301 3.699 15 O -0.401 6.401 16 C -0.153 4.153 17 C -0.187 4.187 18 C 0.217 3.783 19 F -0.161 7.161 20 F -0.169 7.169 21 C -0.178 4.178 22 C -0.048 4.048 23 Cl -0.091 7.091 24 C -0.157 4.157 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.136 0.864 28 H 0.234 0.766 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.770 -11.518 1.030 12.509 hybrid contribution -0.366 0.462 -0.344 0.682 sum -5.136 -11.057 0.686 12.211 Atomic orbital electron populations 1.69722 1.07355 1.29406 1.36372 1.25941 0.95007 1.01462 0.92328 0.86175 0.79798 0.79716 0.79922 1.18886 1.20275 1.18929 1.19500 0.94987 0.89931 1.44072 0.90064 1.17609 0.91250 0.92350 0.88147 1.20904 1.01492 0.94776 1.05120 1.20387 0.91888 0.98245 0.98809 1.16895 0.94506 0.85400 1.11924 1.42906 1.48254 1.20928 1.16543 1.19951 0.83175 0.84660 0.82133 1.90693 1.38361 1.70661 1.40434 1.22528 0.95660 0.97132 0.99988 1.24058 0.96631 0.98008 0.99972 1.22072 0.94116 0.83236 0.78855 1.93014 1.93321 1.48207 1.81556 1.93021 1.85318 1.95405 1.43162 1.23972 0.92325 1.02813 0.98670 1.20427 0.86136 0.95529 1.02691 1.98254 1.30519 1.97903 1.82378 1.21212 0.97193 0.94563 1.02740 0.90629 0.87835 0.86375 0.76582 0.85783 0.86322 0.87984 0.88366 0.85495 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.89 10.59 55.55 0.59 -19.30 16 2 C 0.07 1.66 5.42 -17.34 -0.09 1.57 16 3 Si 0.92 18.05 29.56 -169.99 -5.03 13.02 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.39 9.02 -37.86 -0.34 -11.73 16 8 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 9 C 0.11 2.75 5.55 -106.81 -0.59 2.16 16 10 C -0.20 -4.75 9.74 -39.25 -0.38 -5.13 16 11 C -0.07 -1.62 8.62 -39.80 -0.34 -1.96 16 12 C 0.01 0.13 6.32 -83.52 -0.53 -0.40 16 13 N -0.64 -10.54 5.01 -9.71 -0.05 -10.59 16 14 C 0.51 7.99 7.19 -10.98 -0.08 7.91 16 15 O -0.52 -10.11 13.29 5.56 0.07 -10.04 16 16 C -0.13 -1.41 4.12 -90.96 -0.37 -1.79 16 17 C -0.15 -1.47 7.43 -25.83 -0.19 -1.66 16 18 C 0.25 2.69 3.28 -25.83 -0.08 2.61 16 19 F -0.18 -1.98 17.38 2.25 0.04 -1.94 16 20 F -0.19 -2.31 17.41 2.25 0.04 -2.27 16 21 C -0.14 -1.46 7.18 -25.92 -0.19 -1.64 16 22 C -0.02 -0.43 6.30 -39.71 -0.25 -0.68 16 23 Cl -0.12 -2.17 27.92 -51.86 -1.45 -3.62 16 24 C -0.14 -3.34 8.38 -39.24 -0.33 -3.66 16 25 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 26 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 27 H 0.12 2.54 6.18 -52.48 -0.32 2.21 16 28 H 0.40 5.45 8.05 -40.82 -0.33 5.12 16 29 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.12 1.28 8.09 -51.93 -0.42 0.86 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.13 1.49 7.45 -51.93 -0.39 1.10 16 34 H 0.14 3.69 6.13 -52.49 -0.32 3.37 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -27.40 315.58 -7.82 -35.22 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.02 Total: 9.17 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.78 Total: -14.41 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.54 Total: -29.89 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.08 Total: -4.21 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -1.45 Total: -3.62 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.40 -7.82 -35.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335038576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.355 kcal (2) G-P(sol) polarization free energy of solvation -27.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds