Wall clock time and date at job start Fri Apr 10 2020 23:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48499 * 109.47508 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47174 * 120.00151 * 3 2 1 7 7 C 1.39897 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00134 * 175.39382 * 7 2 1 9 9 C 1.41152 * 119.99785 * 355.39377 * 7 2 1 10 10 C 1.40894 * 120.15731 * 214.82631 * 9 7 2 11 11 C 1.36373 * 119.84632 * 179.73769 * 10 9 7 12 12 C 1.39464 * 120.18338 * 0.54355 * 11 10 9 13 13 N 1.39262 * 119.84483 * 179.75459 * 12 11 10 14 14 C 1.34776 * 119.99409 * 34.82650 * 13 12 11 15 15 O 1.21276 * 120.00528 * 355.38235 * 14 13 12 16 16 C 1.50707 * 119.99658 * 175.65793 * 14 13 12 17 17 C 1.53780 * 113.61407 * 279.13435 * 16 14 13 18 18 C 1.53957 * 87.02108 * 220.04818 * 17 16 14 19 19 F 1.39897 * 113.53942 * 270.81329 * 18 17 16 20 20 F 1.39901 * 113.66342 * 139.93487 * 18 17 16 21 21 C 1.53778 * 113.61304 * 181.53082 * 16 14 13 22 22 C 1.39588 * 120.31672 * 359.47936 * 12 11 10 23 23 Cl 1.73597 * 119.92506 * 180.25822 * 22 12 11 24 24 C 1.36475 * 120.14631 * 0.22961 * 22 12 11 25 25 H 0.97003 * 120.00263 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.07323 * 0.02684 * 10 9 7 27 27 H 1.08007 * 119.91046 * 180.29330 * 11 10 9 28 28 H 0.96994 * 120.00294 * 214.82663 * 13 12 11 29 29 H 1.08995 * 112.85118 * 50.33634 * 16 14 13 30 30 H 1.09003 * 113.61655 * 334.57120 * 17 16 14 31 31 H 1.08996 * 113.61164 * 105.47176 * 17 16 14 32 32 H 1.08999 * 113.61786 * 254.53086 * 21 16 14 33 33 H 1.08996 * 113.62025 * 25.34606 * 21 16 14 34 34 H 1.07998 * 120.08978 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0857 -1.2129 -0.0757 9 6 1.3060 -2.4320 0.0971 10 6 1.8668 -3.5172 0.7992 11 6 1.1804 -4.6917 0.8941 12 6 -0.0690 -4.8246 0.2888 13 7 -0.7616 -6.0289 0.3859 14 6 -0.6739 -6.7679 1.5095 15 8 0.0726 -6.4274 2.4026 16 6 -1.4990 -8.0208 1.6537 17 6 -2.9529 -7.7554 2.0786 18 6 -2.8281 -8.9916 2.9878 19 9 -3.1815 -10.1883 2.3552 20 9 -3.4395 -8.8344 4.2363 21 6 -1.3131 -8.7285 3.0062 22 6 -0.6313 -3.7543 -0.4090 23 17 -2.1901 -3.9287 -1.1528 24 6 0.0415 -2.5710 -0.5072 25 1 -0.4851 0.8400 0.0004 26 1 2.8361 -3.4175 1.2650 27 1 1.6073 -5.5227 1.4360 28 1 -1.3070 -6.3358 -0.3552 29 1 -1.4095 -8.6875 0.7961 30 1 -3.0844 -6.8221 2.6262 31 1 -3.6734 -7.8779 1.2700 32 1 -0.7117 -9.6355 2.9454 33 1 -0.9940 -8.0622 3.8076 34 1 -0.3942 -1.7437 -1.0477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335038576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:09 Heat of formation + Delta-G solvation = -118.330905 kcal Electronic energy + Delta-G solvation = -23187.847371 eV Core-core repulsion = 19167.921363 eV Total energy + Delta-G solvation = -4019.926009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86225 -48.20558 -41.55803 -39.60652 -37.88561 -37.22754 -36.13358 -34.76911 -31.30999 -31.00595 -27.99978 -27.28266 -26.17398 -23.67581 -22.84306 -21.88840 -20.78877 -19.49427 -19.10209 -18.21077 -17.82610 -17.39011 -17.27820 -17.11291 -16.32631 -16.01904 -15.67555 -15.24027 -15.06717 -14.84257 -14.66488 -14.47928 -14.33657 -14.11841 -13.65880 -13.47598 -13.22696 -13.07053 -12.78899 -12.66724 -12.53474 -12.46009 -12.27608 -11.97052 -11.71944 -11.58583 -11.47547 -11.23806 -10.84019 -10.65231 -9.39710 -8.83502 -8.55122 -6.39952 0.59249 0.95490 1.39325 1.41656 1.44848 1.52930 1.66300 2.13495 2.23262 2.43829 2.70045 2.75523 3.16345 3.25613 3.40865 3.53725 3.95165 4.25615 4.36085 4.37436 4.46086 4.61847 4.71876 4.72279 4.91564 5.00247 5.08410 5.21575 5.28903 5.45822 5.71799 5.84037 6.02679 6.22795 6.51169 6.59240 6.85681 6.89499 7.25905 8.36443 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.025089 B = 0.003183 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.750381 B = 8795.244883 C = 9246.716148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.030 3.970 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.490 4.490 8 H 0.082 0.918 9 C 0.080 3.920 10 C -0.212 4.212 11 C -0.082 4.082 12 C 0.023 3.977 13 N -0.640 5.640 14 C 0.517 3.483 15 O -0.563 6.563 16 C -0.120 4.120 17 C -0.144 4.144 18 C 0.256 3.744 19 F -0.179 7.179 20 F -0.200 7.200 21 C -0.140 4.140 22 C -0.027 4.027 23 Cl -0.085 7.085 24 C -0.154 4.154 25 H 0.287 0.713 26 H 0.108 0.892 27 H 0.124 0.876 28 H 0.416 0.584 29 H 0.161 0.839 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -13.220 0.007 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.520 4.520 8 H 0.100 0.900 9 C 0.077 3.923 10 C -0.232 4.232 11 C -0.102 4.102 12 C -0.072 4.072 13 N -0.284 5.284 14 C 0.305 3.695 15 O -0.441 6.441 16 C -0.141 4.141 17 C -0.182 4.182 18 C 0.220 3.780 19 F -0.160 7.160 20 F -0.181 7.181 21 C -0.178 4.178 22 C -0.056 4.056 23 Cl -0.057 7.057 24 C -0.175 4.175 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.142 0.858 28 H 0.253 0.747 29 H 0.178 0.822 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.681 -12.900 0.590 14.108 hybrid contribution -0.192 0.681 -0.187 0.732 sum -5.873 -12.219 0.403 13.563 Atomic orbital electron populations 1.69799 1.08635 1.30368 1.37318 1.26754 0.95751 1.04411 0.91428 0.85141 0.78494 0.75475 0.79954 1.18174 1.19497 1.18798 1.19747 0.95250 0.90909 1.46103 0.90035 1.17901 0.92154 0.93087 0.89164 1.21058 1.01940 0.95084 1.05167 1.20525 0.92522 0.98000 0.99138 1.16960 0.93979 0.86668 1.09551 1.42910 1.48122 1.19575 1.17816 1.20774 0.82550 0.85327 0.80855 1.90686 1.40089 1.71774 1.41591 1.22586 0.95027 0.94913 1.01525 1.24070 0.96526 0.97189 1.00421 1.22054 0.94006 0.83461 0.78529 1.93021 1.93313 1.48209 1.81424 1.93001 1.85520 1.95488 1.44050 1.23975 0.92653 1.03280 0.97940 1.20455 0.87465 0.94951 1.02720 1.98251 1.27945 1.97768 1.81729 1.21109 0.97638 0.95208 1.03568 0.90229 0.87352 0.85776 0.74672 0.82179 0.87365 0.85376 0.86434 0.87123 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.40 10.59 21.82 0.23 -42.17 16 2 C 0.03 1.46 5.42 85.24 0.46 1.92 16 3 Si 0.99 37.36 29.56 68.60 2.03 39.39 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.49 -25.37 9.02 23.39 0.21 -25.16 16 8 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 9 C 0.08 4.15 5.55 -21.28 -0.12 4.03 16 10 C -0.21 -10.20 9.74 22.48 0.22 -9.98 16 11 C -0.08 -3.62 8.62 22.13 0.19 -3.43 16 12 C 0.02 0.95 6.32 38.58 0.24 1.19 16 13 N -0.64 -19.59 5.01 -303.02 -1.52 -21.11 16 14 C 0.52 14.95 7.19 87.66 0.63 15.58 16 15 O -0.56 -21.15 13.29 -3.02 -0.04 -21.19 16 16 C -0.12 -2.17 4.12 -11.01 -0.05 -2.21 16 17 C -0.14 -2.41 7.43 31.18 0.23 -2.17 16 18 C 0.26 4.75 3.28 31.18 0.10 4.85 16 19 F -0.18 -3.34 17.38 44.97 0.78 -2.56 16 20 F -0.20 -4.57 17.41 44.97 0.78 -3.79 16 21 C -0.14 -2.58 7.18 31.12 0.22 -2.36 16 22 C -0.03 -1.19 6.30 22.18 0.14 -1.05 16 23 Cl -0.09 -3.00 27.92 -2.72 -0.08 -3.07 16 24 C -0.15 -7.73 8.38 22.49 0.19 -7.54 16 25 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 26 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 27 H 0.12 5.32 6.18 -2.91 -0.02 5.30 16 28 H 0.42 10.06 8.05 -92.71 -0.75 9.31 16 29 H 0.16 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.11 2.10 8.09 -2.39 -0.02 2.08 16 31 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 2.47 7.45 -2.39 -0.02 2.46 16 34 H 0.13 6.74 6.13 -2.91 -0.02 6.72 16 Total: -1.00 -60.61 315.58 5.29 -55.31 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.43 Total: 25.53 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 2.68 Total: -26.35 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -1.29 Total: -63.28 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.04 Total: -21.19 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 1.56 Total: -6.34 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.08 Total: -3.07 kcal Total: -60.61 5.29 -55.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335038576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.017 kcal (2) G-P(sol) polarization free energy of solvation -60.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds