Wall clock time and date at job start Fri Apr 10 2020 23:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48497 * 109.47001 * 240.00104 * 3 2 1 5 5 H 1.48500 * 109.46950 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47238 * 119.99713 * 3 2 1 7 7 C 1.39943 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99821 * 197.86146 * 7 2 1 9 9 C 1.41395 * 120.00403 * 17.86634 * 7 2 1 10 10 C 1.40745 * 120.23406 * 24.40513 * 9 7 2 11 11 C 1.37603 * 119.76987 * 179.97438 * 10 9 7 12 12 C 1.38637 * 120.26296 * 359.97438 * 11 10 9 13 13 S 1.76203 * 119.75478 * 179.74630 * 12 11 10 14 14 O 1.42095 * 106.40105 * 228.54216 * 13 12 11 15 15 O 1.42099 * 106.40215 * 1.46026 * 13 12 11 16 16 N 1.65594 * 107.21761 * 115.00135 * 13 12 11 17 17 C 1.47030 * 125.64843 * 269.68949 * 16 13 12 18 18 C 1.54314 * 107.27591 * 180.96604 * 17 16 13 19 19 C 1.55164 * 102.86367 * 22.53127 * 18 17 16 20 20 C 1.47424 * 125.65191 * 89.99617 * 16 13 12 21 21 C 1.38729 * 120.48455 * 0.02562 * 12 11 10 22 22 Cl 1.73606 * 119.88635 * 179.97438 * 21 12 11 23 23 C 1.37749 * 120.22573 * 359.97438 * 21 12 11 24 24 H 0.96994 * 119.99711 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.11582 * 359.96268 * 10 9 7 26 26 H 1.08005 * 119.86902 * 180.02562 * 11 10 9 27 27 H 1.08993 * 109.88282 * 300.51525 * 17 16 13 28 28 H 1.09000 * 109.87719 * 61.67950 * 17 16 13 29 29 H 1.08992 * 110.93112 * 264.11597 * 18 17 16 30 30 H 1.09002 * 110.58884 * 140.78260 * 18 17 16 31 31 H 1.09001 * 111.00516 * 206.23004 * 19 18 17 32 32 H 1.08998 * 111.00849 * 82.36930 * 19 18 17 33 33 H 1.09000 * 110.36943 * 274.67911 * 20 16 13 34 34 H 1.09009 * 110.36297 * 36.89100 * 20 16 13 35 35 H 1.08003 * 120.13604 * 179.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2863 9 6 1.3522 -2.4068 -0.3767 10 6 0.2211 -2.3614 -1.2131 11 6 -0.4094 -3.5301 -1.5737 12 6 0.0656 -4.7499 -1.1169 13 16 -0.7561 -6.2377 -1.5816 14 8 -0.9468 -6.9810 -0.3856 15 8 -1.8238 -5.8558 -2.4379 16 7 0.2998 -7.1109 -2.5115 17 6 0.4225 -7.0296 -3.9744 18 6 1.5116 -8.0367 -4.3996 19 6 1.5366 -9.0390 -3.2155 20 6 1.2681 -8.1032 -2.0104 21 6 1.1796 -4.8071 -0.2921 22 17 1.7607 -6.3429 0.2713 23 6 1.8262 -3.6496 0.0813 24 1 -0.4849 0.8400 -0.0004 25 1 -0.1508 -1.4125 -1.5705 26 1 -1.2772 -3.4971 -2.2158 27 1 -0.5276 -7.2891 -4.4411 28 1 0.7181 -6.0218 -4.2661 29 1 2.4775 -7.5433 -4.5076 30 1 1.2287 -8.5395 -5.3245 31 1 2.5122 -9.5173 -3.1289 32 1 0.7461 -9.7827 -3.3163 33 1 2.1895 -7.6109 -1.6997 34 1 0.8402 -8.6649 -1.1799 35 1 2.6931 -3.6958 0.7238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335168723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:14 Heat of formation + Delta-G solvation = -85.256377 kcal Electronic energy + Delta-G solvation = -22238.830278 eV Core-core repulsion = 18774.178875 eV Total energy + Delta-G solvation = -3464.651403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.64699 -39.16560 -38.24664 -37.44403 -36.82718 -35.78855 -32.25065 -31.77945 -31.15383 -29.85762 -27.79700 -23.61083 -23.42667 -23.12794 -22.00625 -19.97624 -19.60992 -18.93362 -18.26436 -17.34546 -17.17146 -16.47380 -16.24364 -15.65874 -15.11670 -14.78621 -14.64439 -14.56274 -14.52321 -14.13282 -13.92393 -13.55325 -13.33142 -13.16011 -13.11666 -12.95547 -12.78093 -12.63534 -12.32109 -12.26994 -12.10139 -12.05057 -11.87279 -11.78280 -11.44394 -11.28019 -11.21399 -10.00546 -9.87289 -9.48757 -8.95997 -6.76208 -0.44726 0.28552 0.78457 1.12382 1.35903 1.43581 1.51461 2.08344 2.14298 2.42315 2.84400 3.30761 3.40266 3.71551 3.93499 4.14041 4.18462 4.41259 4.62639 4.65839 4.69973 4.73123 4.88862 4.96091 4.97997 5.02855 5.08761 5.11357 5.19369 5.22990 5.31906 5.44341 5.54369 5.62564 5.76034 5.92328 6.33529 6.54034 6.60225 7.98989 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.004397 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.479600 B = 6366.058644 C = 6555.410464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.034 3.966 3 Si 0.996 3.004 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.447 4.447 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.201 4.201 11 C -0.016 4.016 12 C -0.807 4.807 13 S 2.729 3.271 14 O -0.986 6.986 15 O -0.999 6.999 16 N -1.011 6.011 17 C 0.107 3.893 18 C -0.118 4.118 19 C -0.121 4.121 20 C 0.102 3.898 21 C 0.086 3.914 22 Cl -0.074 7.074 23 C -0.240 4.240 24 H 0.303 0.697 25 H 0.120 0.880 26 H 0.123 0.877 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -8.464 -6.902 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.473 4.473 8 H 0.118 0.882 9 C 0.112 3.888 10 C -0.221 4.221 11 C -0.036 4.036 12 C -0.900 4.900 13 S 2.826 3.174 14 O -0.977 6.977 15 O -0.990 6.990 16 N -0.851 5.851 17 C -0.018 4.018 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.022 4.022 21 C 0.058 3.942 22 Cl -0.045 7.045 23 C -0.261 4.261 24 H 0.114 0.886 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.568 -8.674 -6.551 11.791 hybrid contribution 0.495 1.326 0.472 1.492 sum 5.064 -7.348 -6.079 10.798 Atomic orbital electron populations 1.69837 1.09579 1.32479 1.29215 1.27106 0.95570 1.05442 0.90571 0.85012 0.78739 0.74069 0.80687 1.17793 1.18849 1.17737 1.20287 0.99183 0.91595 1.36198 0.88158 1.18050 0.90760 0.92535 0.87423 1.21431 1.00526 0.97227 1.02943 1.20432 0.96699 0.91122 0.95322 1.29583 1.17283 1.18190 1.24907 1.00155 0.72500 0.72657 0.72125 1.93490 1.85331 1.71652 1.47202 1.93431 1.52990 1.84440 1.68104 1.58460 1.55191 1.54092 1.17342 1.21967 1.00851 1.00951 0.78007 1.22637 0.98145 0.95636 0.99216 1.22814 1.03860 0.96795 0.92548 1.22435 0.91917 0.89391 0.98482 1.20111 0.93632 0.86012 0.94460 1.98310 1.88354 1.29310 1.88559 1.21098 1.05361 0.91043 1.08621 0.88581 0.86242 0.85959 0.91043 0.92202 0.89854 0.87710 0.87651 0.89964 0.91388 0.91146 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.95 10.95 21.83 0.24 -36.71 16 2 C 0.03 1.50 5.14 85.26 0.44 1.94 16 3 Si 1.00 32.69 29.60 68.60 2.03 34.72 16 4 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 5 H -0.26 -8.24 7.11 99.48 0.71 -7.54 16 6 H -0.25 -8.03 7.11 99.48 0.71 -7.32 16 7 C -0.45 -21.31 9.05 23.46 0.21 -21.10 16 8 H 0.10 4.43 7.91 -2.91 -0.02 4.40 16 9 C 0.12 5.89 5.57 -21.29 -0.12 5.77 16 10 C -0.20 -10.19 8.70 22.73 0.20 -9.99 16 11 C -0.02 -0.75 9.52 22.21 0.21 -0.54 16 12 C -0.81 -37.23 5.93 22.48 0.13 -37.09 16 13 S 2.73 113.12 5.32 -56.49 -0.30 112.82 16 14 O -0.99 -44.25 15.77 -128.00 -2.02 -46.27 16 15 O -1.00 -44.58 16.52 -128.00 -2.11 -46.70 16 16 N -1.01 -32.61 3.67 -506.42 -1.86 -34.47 16 17 C 0.11 2.76 6.98 86.72 0.61 3.36 16 18 C -0.12 -2.03 6.95 31.78 0.22 -1.80 16 19 C -0.12 -2.14 7.08 31.99 0.23 -1.91 16 20 C 0.10 2.74 5.29 86.86 0.46 3.20 16 21 C 0.09 3.91 6.29 22.27 0.14 4.05 16 22 Cl -0.07 -2.84 22.97 -2.72 -0.06 -2.90 16 23 C -0.24 -11.42 9.57 22.75 0.22 -11.20 16 24 H 0.30 12.57 8.30 -92.71 -0.77 11.80 16 25 H 0.12 6.10 6.15 -2.91 -0.02 6.08 16 26 H 0.12 5.54 7.31 -2.91 -0.02 5.52 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.83 6.38 -2.39 -0.02 1.82 16 34 H 0.07 1.98 7.78 -2.38 -0.02 1.96 16 35 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -61.68 312.95 -0.03 -61.71 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.12 Total: 23.11 kcal Atomic # 6 Polarization: -68.26 SS G_CDS: 2.94 Total: -65.31 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -1.62 Total: -71.18 kcal Atomic # 8 Polarization: -88.84 SS G_CDS: -4.13 Total: -92.97 kcal Atomic # 14 Polarization: 32.69 SS G_CDS: 2.03 Total: 34.72 kcal Atomic # 16 Polarization: 113.12 SS G_CDS: -0.30 Total: 112.82 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.06 Total: -2.90 kcal Total: -61.68 -0.03 -61.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335168723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.549 kcal (2) G-P(sol) polarization free energy of solvation -61.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds