Wall clock time and date at job start Fri Apr 10 2020 23:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38239 * 120.01039 * 2 1 4 4 C 1.38217 * 120.01659 * 179.74470 * 3 2 1 5 5 C 1.38266 * 120.02617 * 0.23753 * 4 3 2 6 6 C 1.38192 * 120.00906 * 0.04297 * 5 4 3 7 7 S 1.76200 * 120.00179 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40290 * 228.53780 * 7 6 5 9 9 O 1.42101 * 106.40413 * 1.45866 * 7 6 5 10 10 N 1.65603 * 107.22106 * 114.99735 * 7 6 5 11 11 C 1.36940 * 119.99847 * 89.99549 * 10 7 6 12 12 H 1.08001 * 119.99803 * 230.55140 * 11 10 7 13 13 C 1.38813 * 119.99805 * 50.55260 * 11 10 7 14 14 N 1.31614 * 120.00233 * 22.14578 * 13 11 10 15 15 Si 1.86797 * 119.99816 * 202.14876 * 13 11 10 16 16 H 1.48507 * 109.47358 * 89.99736 * 15 13 11 17 17 H 1.48501 * 109.47237 * 209.99701 * 15 13 11 18 18 H 1.48502 * 109.47356 * 329.99927 * 15 13 11 19 19 C 1.46498 * 119.99990 * 270.00012 * 10 7 6 20 20 C 1.53002 * 117.49718 * 187.01306 * 19 10 7 21 21 C 1.53000 * 60.00196 * 252.51282 * 20 19 10 22 22 C 1.38332 * 120.00773 * 180.28314 * 2 1 3 23 23 Cl 1.73604 * 120.01244 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47508 * 89.99488 * 1 2 3 25 25 H 1.09003 * 109.47326 * 209.99765 * 1 2 3 26 26 H 1.09007 * 109.46846 * 329.99667 * 1 2 3 27 27 H 1.08009 * 119.98801 * 0.02940 * 3 2 1 28 28 H 1.08000 * 119.98821 * 180.25355 * 4 3 2 29 29 H 1.07998 * 119.99125 * 180.02562 * 5 4 3 30 30 H 0.96994 * 120.00524 * 174.15850 * 14 13 11 31 31 H 1.08998 * 115.55026 * 332.72516 * 19 10 7 32 32 H 1.09000 * 117.50097 * 0.02562 * 20 19 10 33 33 H 1.08995 * 117.49686 * 145.02245 * 20 19 10 34 34 H 1.09000 * 117.50241 * 252.51494 * 21 20 19 35 35 H 1.09000 * 117.50178 * 107.49120 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5805 1.1972 0.0053 5 6 4.2725 0.0002 0.0057 6 6 3.5825 -1.1971 -0.0001 7 16 4.4645 -2.7224 0.0010 8 8 3.8891 -3.5195 -1.0250 9 8 5.8449 -2.3877 0.0432 10 7 4.1243 -3.4844 1.4314 11 6 3.0556 -4.3364 1.5160 12 1 2.3365 -4.2231 2.3138 13 6 2.8966 -5.3457 0.5764 14 7 3.9340 -5.7746 -0.1108 15 14 1.2102 -6.0953 0.2872 16 1 0.5061 -5.3346 -0.7764 17 1 1.3634 -7.5106 -0.1354 18 1 0.4203 -6.0365 1.5433 19 6 4.9666 -3.2469 2.6063 20 6 4.7035 -4.1008 3.8484 21 6 4.3036 -2.6240 3.8365 22 6 2.1988 -1.1979 -0.0059 23 17 1.3313 -2.7016 -0.0127 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6583 2.1324 0.0005 28 1 4.1202 2.1327 0.0095 29 1 5.3525 0.0010 0.0103 30 1 3.8412 -6.5356 -0.7050 31 1 5.9993 -2.9687 2.3959 32 1 3.9040 -4.8394 3.7912 33 1 5.5632 -4.3845 4.4553 34 1 4.9003 -1.9361 4.4356 35 1 3.2409 -2.3908 3.7717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335961052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:19 Heat of formation + Delta-G solvation = -10.480326 kcal Electronic energy + Delta-G solvation = -23345.830980 eV Core-core repulsion = 19884.422110 eV Total energy + Delta-G solvation = -3461.408870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.91058 -37.15814 -35.92218 -35.36102 -34.03888 -33.26652 -32.54341 -30.67089 -30.33187 -26.69873 -24.97025 -22.68397 -21.59521 -21.39656 -20.48840 -18.81154 -17.34385 -16.40308 -16.05920 -15.58239 -15.26544 -15.06745 -14.26347 -14.07333 -13.94047 -13.71019 -13.22226 -13.09505 -12.38166 -12.24094 -12.12566 -11.80304 -11.56523 -11.49147 -11.35354 -11.00050 -10.89622 -10.76759 -10.57958 -10.42332 -10.31210 -10.27419 -10.05064 -9.94227 -9.40780 -9.32348 -8.77005 -8.57077 -8.18084 -7.50715 -6.54035 -4.10606 1.28931 1.55437 2.01122 2.63412 3.19587 3.21513 3.32822 3.80060 4.08034 4.57372 4.72554 4.93736 4.97759 5.06953 5.27631 5.41757 5.49343 5.68087 5.74211 5.74874 5.79555 5.86106 5.89570 6.05797 6.24746 6.31333 6.32568 6.41383 6.50802 6.62020 6.66400 6.77994 7.00131 7.13825 7.37728 7.52369 8.18819 8.87601 9.30747 10.51790 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.009069 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.179846 B = 3086.661760 C = 3899.007230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.112 4.112 3 C -0.084 4.084 4 C -0.146 4.146 5 C -0.035 4.035 6 C -0.651 4.651 7 S 2.545 3.455 8 O -0.932 6.932 9 O -1.016 7.016 10 N -0.781 5.781 11 C -0.256 4.256 12 H 0.082 0.918 13 C 0.070 3.930 14 N -0.769 5.769 15 Si 0.892 3.108 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.265 1.265 19 C 0.099 3.901 20 C -0.162 4.162 21 C -0.214 4.214 22 C 0.048 3.952 23 Cl -0.023 7.023 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.137 0.863 30 H 0.281 0.719 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.693 8.228 3.744 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.113 4.113 3 C -0.103 4.103 4 C -0.165 4.165 5 C -0.054 4.054 6 C -0.726 4.726 7 S 2.643 3.357 8 O -0.920 6.920 9 O -1.006 7.006 10 N -0.602 5.602 11 C -0.405 4.405 12 H 0.099 0.901 13 C -0.149 4.149 14 N -0.405 5.405 15 Si 0.718 3.282 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.189 1.189 19 C -0.010 4.010 20 C -0.201 4.201 21 C -0.254 4.254 22 C 0.020 3.980 23 Cl 0.006 6.994 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.155 0.845 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.067 8.044 2.690 9.407 hybrid contribution -1.231 0.309 -0.117 1.274 sum -5.298 8.353 2.573 10.220 Atomic orbital electron populations 1.20831 0.90637 1.03165 1.02540 1.19842 0.96442 0.91965 1.03061 1.21019 0.94285 0.96718 0.98234 1.21247 0.94362 0.98188 1.02706 1.20913 1.00206 0.90782 0.93535 1.32587 1.04702 1.25281 1.10003 1.11667 0.74394 0.72331 0.77280 1.93460 1.77756 1.63875 1.56861 1.93269 1.34478 1.85011 1.87812 1.52410 1.36629 1.46139 1.24995 1.18920 1.02466 1.05456 1.13660 0.90053 1.25586 0.97876 0.95515 0.95919 1.69757 1.30104 1.19958 1.20634 0.86400 0.83094 0.79111 0.79628 1.18703 1.20028 1.18898 1.21362 0.93975 1.03411 0.82294 1.23067 1.03295 0.93870 0.99878 1.23341 1.01633 0.96215 1.04182 1.20576 0.91645 0.88615 0.97181 1.98470 1.77047 1.28063 1.95776 0.91128 0.90688 0.91589 0.85726 0.85781 0.84500 0.90852 0.86397 0.87322 0.89804 0.89865 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.61 36.00 0.35 -1.21 16 2 C -0.11 -1.90 5.88 -104.59 -0.62 -2.52 16 3 C -0.08 -1.26 9.70 -39.59 -0.38 -1.64 16 4 C -0.15 -2.29 10.05 -39.58 -0.40 -2.69 16 5 C -0.04 -0.68 9.55 -39.59 -0.38 -1.05 16 6 C -0.65 -14.32 5.91 -39.55 -0.23 -14.55 16 7 S 2.54 64.59 4.96 -107.50 -0.53 64.06 16 8 O -0.93 -26.14 12.61 -57.17 -0.72 -26.86 16 9 O -1.02 -27.18 15.76 -57.17 -0.90 -28.08 16 10 N -0.78 -18.64 3.03 -53.42 -0.16 -18.80 16 11 C -0.26 -6.14 4.91 -15.06 -0.07 -6.21 16 12 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 13 C 0.07 1.76 3.63 -17.43 -0.06 1.70 16 14 N -0.77 -20.82 11.49 55.49 0.64 -20.18 16 15 Si 0.89 19.59 27.46 -169.99 -4.67 14.92 16 16 H -0.26 -5.81 6.97 56.52 0.39 -5.41 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 19 C 0.10 2.06 6.37 -67.93 -0.43 1.62 16 20 C -0.16 -2.89 9.84 -26.73 -0.26 -3.15 16 21 C -0.21 -3.71 10.30 -26.73 -0.28 -3.98 16 22 C 0.05 0.98 6.30 -39.50 -0.25 0.74 16 23 Cl -0.02 -0.50 19.19 -51.86 -1.00 -1.49 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.05 6.92 -51.93 -0.36 0.69 16 26 H 0.07 0.72 8.09 -51.92 -0.42 0.30 16 27 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 28 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.14 2.54 7.33 -52.49 -0.38 2.15 16 30 H 0.28 7.19 8.32 -40.82 -0.34 6.85 16 31 H 0.12 2.45 7.40 -51.93 -0.38 2.07 16 32 H 0.11 2.05 6.98 -51.93 -0.36 1.68 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 309.20 15.07 4.66 4.66 Total: -1.00 -30.39 309.20 -9.70 -40.09 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.00 Total: 4.65 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: -3.02 Total: -32.96 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.48 Total: -38.98 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -1.62 Total: -54.94 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.92 kcal Atomic # 16 Polarization: 64.59 SS G_CDS: -0.53 Total: 64.06 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.00 Total: -1.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.39 -9.70 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335961052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.611 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds