Wall clock time and date at job start Fri Apr 10 2020 23:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38239 * 120.01039 * 2 1 4 4 C 1.38217 * 120.01659 * 179.74470 * 3 2 1 5 5 C 1.38266 * 120.02617 * 0.23753 * 4 3 2 6 6 C 1.38192 * 120.00906 * 0.04297 * 5 4 3 7 7 S 1.76200 * 120.00179 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40290 * 228.53780 * 7 6 5 9 9 O 1.42101 * 106.40413 * 1.45866 * 7 6 5 10 10 N 1.65603 * 107.22106 * 114.99735 * 7 6 5 11 11 C 1.36940 * 119.99847 * 89.99549 * 10 7 6 12 12 H 1.08001 * 119.99803 * 230.55140 * 11 10 7 13 13 C 1.38813 * 119.99805 * 50.55260 * 11 10 7 14 14 N 1.31614 * 120.00233 * 22.14578 * 13 11 10 15 15 Si 1.86797 * 119.99816 * 202.14876 * 13 11 10 16 16 H 1.48507 * 109.47358 * 89.99736 * 15 13 11 17 17 H 1.48501 * 109.47237 * 209.99701 * 15 13 11 18 18 H 1.48502 * 109.47356 * 329.99927 * 15 13 11 19 19 C 1.46498 * 119.99990 * 270.00012 * 10 7 6 20 20 C 1.53002 * 117.49718 * 187.01306 * 19 10 7 21 21 C 1.53000 * 60.00196 * 252.51282 * 20 19 10 22 22 C 1.38332 * 120.00773 * 180.28314 * 2 1 3 23 23 Cl 1.73604 * 120.01244 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47508 * 89.99488 * 1 2 3 25 25 H 1.09003 * 109.47326 * 209.99765 * 1 2 3 26 26 H 1.09007 * 109.46846 * 329.99667 * 1 2 3 27 27 H 1.08009 * 119.98801 * 0.02940 * 3 2 1 28 28 H 1.08000 * 119.98821 * 180.25355 * 4 3 2 29 29 H 1.07998 * 119.99125 * 180.02562 * 5 4 3 30 30 H 0.96994 * 120.00524 * 174.15850 * 14 13 11 31 31 H 1.08998 * 115.55026 * 332.72516 * 19 10 7 32 32 H 1.09000 * 117.50097 * 0.02562 * 20 19 10 33 33 H 1.08995 * 117.49686 * 145.02245 * 20 19 10 34 34 H 1.09000 * 117.50241 * 252.51494 * 21 20 19 35 35 H 1.09000 * 117.50178 * 107.49120 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5805 1.1972 0.0053 5 6 4.2725 0.0002 0.0057 6 6 3.5825 -1.1971 -0.0001 7 16 4.4645 -2.7224 0.0010 8 8 3.8891 -3.5195 -1.0250 9 8 5.8449 -2.3877 0.0432 10 7 4.1243 -3.4844 1.4314 11 6 3.0556 -4.3364 1.5160 12 1 2.3365 -4.2231 2.3138 13 6 2.8966 -5.3457 0.5764 14 7 3.9340 -5.7746 -0.1108 15 14 1.2102 -6.0953 0.2872 16 1 0.5061 -5.3346 -0.7764 17 1 1.3634 -7.5106 -0.1354 18 1 0.4203 -6.0365 1.5433 19 6 4.9666 -3.2469 2.6063 20 6 4.7035 -4.1008 3.8484 21 6 4.3036 -2.6240 3.8365 22 6 2.1988 -1.1979 -0.0059 23 17 1.3313 -2.7016 -0.0127 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6583 2.1324 0.0005 28 1 4.1202 2.1327 0.0095 29 1 5.3525 0.0010 0.0103 30 1 3.8412 -6.5356 -0.7050 31 1 5.9993 -2.9687 2.3959 32 1 3.9040 -4.8394 3.7912 33 1 5.5632 -4.3845 4.4553 34 1 4.9003 -1.9361 4.4356 35 1 3.2409 -2.3908 3.7717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335961052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:18 Heat of formation + Delta-G solvation = -29.809277 kcal Electronic energy + Delta-G solvation = -23346.669146 eV Core-core repulsion = 19884.422110 eV Total energy + Delta-G solvation = -3462.247036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.26823 -38.77114 -37.70720 -37.11901 -36.04543 -35.07205 -33.82649 -32.44791 -31.74964 -27.90600 -26.82423 -24.11151 -23.01009 -22.77317 -22.11484 -20.66354 -19.00834 -18.07461 -17.75219 -17.22891 -16.83927 -16.75799 -15.99889 -15.50262 -15.29906 -15.15563 -14.95555 -14.48152 -14.10286 -13.63165 -13.41495 -13.28462 -13.16352 -13.05861 -12.96210 -12.61814 -12.42175 -12.37615 -12.29698 -12.19579 -12.10872 -12.04233 -11.68746 -11.60283 -11.09635 -10.93362 -10.48037 -10.09525 -9.58385 -9.26872 -8.42424 -6.01038 -0.15915 0.18225 0.19101 1.05086 1.42529 1.47147 1.64449 2.26656 2.44093 2.84270 3.04021 3.22508 3.49418 3.72862 3.89650 4.12361 4.20646 4.21980 4.29476 4.41339 4.42294 4.55261 4.70720 4.75545 4.81710 4.89810 4.96095 5.14536 5.20026 5.25141 5.28895 5.33992 5.47372 5.56406 5.83099 5.85614 6.29238 7.03033 7.46952 8.64086 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.009069 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.179846 B = 3086.661760 C = 3899.007230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.112 4.112 3 C -0.068 4.068 4 C -0.132 4.132 5 C -0.056 4.056 6 C -0.680 4.680 7 S 2.546 3.454 8 O -0.971 6.971 9 O -1.046 7.046 10 N -0.791 5.791 11 C -0.247 4.247 12 H 0.090 0.910 13 C 0.036 3.964 14 N -0.815 5.815 15 Si 0.927 3.073 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.240 1.240 19 C 0.055 3.945 20 C -0.150 4.150 21 C -0.185 4.185 22 C 0.022 3.978 23 Cl -0.045 7.045 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.177 0.823 28 H 0.168 0.832 29 H 0.131 0.869 30 H 0.277 0.723 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 11.278 5.305 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.113 4.113 3 C -0.086 4.086 4 C -0.151 4.151 5 C -0.076 4.076 6 C -0.760 4.760 7 S 2.649 3.351 8 O -0.960 6.960 9 O -1.036 7.036 10 N -0.613 5.613 11 C -0.396 4.396 12 H 0.108 0.892 13 C -0.179 4.179 14 N -0.452 5.452 15 Si 0.750 3.250 16 H -0.195 1.195 17 H -0.197 1.197 18 H -0.163 1.163 19 C -0.053 4.053 20 C -0.189 4.189 21 C -0.224 4.224 22 C -0.006 4.006 23 Cl -0.015 7.015 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.195 0.805 28 H 0.186 0.814 29 H 0.149 0.851 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.876 11.044 4.290 13.225 hybrid contribution -0.654 -0.389 -0.585 0.960 sum -6.529 10.655 3.705 13.034 Atomic orbital electron populations 1.20934 0.88101 1.04513 1.03634 1.20349 0.98411 0.91218 1.01368 1.21644 0.94117 0.97829 0.95015 1.21722 0.95086 0.98260 0.99991 1.21074 1.00272 0.91512 0.94707 1.32015 1.05510 1.24618 1.13859 1.11036 0.73816 0.73002 0.77209 1.93403 1.78195 1.65892 1.58492 1.93208 1.36380 1.85737 1.88233 1.52285 1.37149 1.46469 1.25401 1.19062 1.02506 1.04689 1.13368 0.89205 1.26270 1.00031 0.95980 0.95665 1.69849 1.32039 1.21047 1.22291 0.85850 0.80364 0.78447 0.80311 1.19517 1.19681 1.16276 1.21575 0.93786 1.07386 0.82578 1.23141 1.03840 0.94053 0.97829 1.23355 1.01471 0.96410 1.01184 1.20781 0.91272 0.89121 0.99406 1.98443 1.77120 1.29918 1.96063 0.90038 0.91663 0.87981 0.80523 0.81422 0.85092 0.91266 0.87407 0.88463 0.87009 0.86797 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.61 71.23 0.68 -2.01 16 2 C -0.11 -3.46 5.88 -19.84 -0.12 -3.57 16 3 C -0.07 -1.69 9.70 22.26 0.22 -1.47 16 4 C -0.13 -3.61 10.05 22.27 0.22 -3.38 16 5 C -0.06 -2.11 9.55 22.27 0.21 -1.90 16 6 C -0.68 -30.15 5.91 22.29 0.13 -30.02 16 7 S 2.55 134.72 4.96 -56.49 -0.28 134.44 16 8 O -0.97 -57.42 12.61 -128.00 -1.61 -59.03 16 9 O -1.05 -58.81 15.76 -128.00 -2.02 -60.83 16 10 N -0.79 -38.86 3.03 -322.93 -0.98 -39.84 16 11 C -0.25 -12.11 4.91 84.03 0.41 -11.70 16 12 H 0.09 4.13 7.74 -2.91 -0.02 4.11 16 13 C 0.04 1.84 3.63 84.86 0.31 2.15 16 14 N -0.82 -46.26 11.49 21.65 0.25 -46.01 16 15 Si 0.93 40.47 27.46 68.60 1.88 42.35 16 16 H -0.27 -12.00 6.97 99.48 0.69 -11.31 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.24 -9.38 7.11 99.48 0.71 -8.67 16 19 C 0.05 2.31 6.37 44.99 0.29 2.60 16 20 C -0.15 -5.18 9.84 30.59 0.30 -4.87 16 21 C -0.18 -6.09 10.30 30.60 0.32 -5.77 16 22 C 0.02 0.89 6.30 22.32 0.14 1.04 16 23 Cl -0.04 -1.94 19.19 -2.72 -0.05 -1.99 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.67 6.92 -2.39 -0.02 1.65 16 26 H 0.10 1.64 8.09 -2.38 -0.02 1.62 16 27 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 28 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.13 4.91 7.33 -2.91 -0.02 4.89 16 30 H 0.28 15.04 8.32 -92.71 -0.77 14.27 16 31 H 0.11 4.65 7.40 -2.39 -0.02 4.63 16 32 H 0.10 3.60 6.98 -2.39 -0.02 3.59 16 33 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -70.74 309.20 1.40 -69.34 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 1.10 Total: 20.47 kcal Atomic # 6 Polarization: -62.03 SS G_CDS: 3.12 Total: -58.91 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -0.73 Total: -85.85 kcal Atomic # 8 Polarization: -116.23 SS G_CDS: -3.63 Total: -119.86 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.88 Total: 42.35 kcal Atomic # 16 Polarization: 134.72 SS G_CDS: -0.28 Total: 134.44 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.05 Total: -1.99 kcal Total: -70.74 1.40 -69.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335961052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.530 kcal (2) G-P(sol) polarization free energy of solvation -70.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds