Wall clock time and date at job start Fri Apr 10 2020 23:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53939 * 113.74522 * 2 1 4 4 N 1.47926 * 86.00014 * 138.00601 * 3 2 1 5 5 S 1.65599 * 134.50659 * 155.33847 * 4 3 2 6 6 O 1.42104 * 106.40037 * 23.56645 * 5 4 3 7 7 O 1.42094 * 106.40439 * 156.49033 * 5 4 3 8 8 C 1.76198 * 107.21751 * 270.02797 * 5 4 3 9 9 C 1.38643 * 119.75746 * 114.72521 * 8 5 4 10 10 C 1.37605 * 120.26297 * 179.72528 * 9 8 5 11 11 C 1.40741 * 119.77105 * 0.52134 * 10 9 8 12 12 C 1.41388 * 120.23801 * 179.77189 * 11 10 9 13 13 H 1.07999 * 120.00100 * 24.37777 * 12 11 10 14 14 C 1.39950 * 120.00211 * 204.37451 * 12 11 10 15 15 N 1.30824 * 119.99678 * 17.87593 * 14 12 11 16 16 Si 1.86801 * 120.00162 * 197.87156 * 14 12 11 17 17 H 1.48504 * 109.47122 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47103 * 120.00154 * 16 14 12 19 19 H 1.48496 * 109.46994 * 240.00110 * 16 14 12 20 20 C 1.40682 * 119.52420 * 359.75310 * 11 10 9 21 21 C 1.37759 * 119.73220 * 359.97438 * 20 11 10 22 22 Cl 1.73603 * 119.88632 * 179.97438 * 21 20 11 23 23 C 1.47589 * 91.00366 * 335.36079 * 4 3 2 24 24 H 1.09007 * 109.46530 * 321.26281 * 1 2 3 25 25 H 1.08996 * 109.47020 * 81.25504 * 1 2 3 26 26 H 1.08998 * 109.47104 * 201.26322 * 1 2 3 27 27 H 1.09008 * 112.94002 * 228.40528 * 2 1 3 28 28 H 1.09003 * 113.77309 * 252.35950 * 3 2 1 29 29 H 1.09001 * 113.77171 * 23.75883 * 3 2 1 30 30 H 1.07996 * 119.86285 * 359.97438 * 9 8 5 31 31 H 1.07993 * 120.11087 * 180.27658 * 10 9 8 32 32 H 0.96999 * 119.99557 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.13346 * 180.02562 * 20 11 10 34 34 H 1.09003 * 113.76079 * 270.33808 * 23 4 3 35 35 H 1.08995 * 113.87311 * 138.95701 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1499 1.4091 0.0000 4 7 3.1122 0.8730 0.9873 5 16 4.6513 1.2772 1.4459 6 8 4.8246 2.6462 1.1065 7 8 4.8219 0.7757 2.7644 8 6 5.7572 0.3665 0.4203 9 6 6.5823 1.0382 -0.4687 10 6 7.4540 0.3377 -1.2705 11 6 7.4987 -1.0669 -1.1941 12 6 8.3872 -1.7968 -2.0169 13 1 9.2793 -1.3243 -2.4007 14 6 8.1107 -3.1316 -2.3339 15 7 6.9001 -3.6031 -2.1801 16 14 9.4701 -4.2399 -2.9766 17 1 10.7379 -3.4710 -3.0595 18 1 9.6478 -5.3907 -2.0551 19 1 9.1052 -4.7387 -4.3268 20 6 6.6533 -1.7394 -0.2929 21 6 5.7924 -1.0179 0.5045 22 17 4.7469 -1.8437 1.6175 23 6 2.1498 -0.1674 1.3992 24 1 -0.3632 0.8017 0.6431 25 1 -0.3633 0.1562 -1.0157 26 1 -0.3633 -0.9577 0.3727 27 1 1.9549 -0.6664 -0.7508 28 1 2.6035 1.6896 -0.9506 29 1 1.4911 2.1789 0.4019 30 1 6.5435 2.1158 -0.5291 31 1 8.0987 0.8638 -1.9589 32 1 6.7084 -4.5282 -2.4001 33 1 6.6798 -2.8170 -0.2259 34 1 1.4910 0.1405 2.2112 35 1 2.6017 -1.1452 1.5656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336256436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:24 Heat of formation + Delta-G solvation = -37.350175 kcal Electronic energy + Delta-G solvation = -22219.598017 eV Core-core repulsion = 18757.023983 eV Total energy + Delta-G solvation = -3462.574034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.99128 -37.86558 -36.46380 -35.65615 -35.07370 -34.12288 -30.89331 -30.33394 -29.47218 -26.04859 -25.98514 -25.28365 -21.77538 -21.32559 -19.93279 -18.29705 -17.86211 -17.18565 -16.65791 -15.77332 -15.42700 -15.21301 -14.51578 -14.19395 -13.71529 -13.52109 -13.37531 -12.79661 -12.73868 -12.56175 -12.45470 -12.29381 -12.17644 -11.63015 -11.49018 -11.38253 -11.29128 -11.24359 -11.17142 -10.76760 -10.59955 -10.49448 -10.37810 -10.09674 -10.01669 -9.61043 -9.52379 -8.67807 -8.11631 -7.72818 -7.28496 -4.96020 1.16136 2.04081 2.64008 2.79859 2.84022 2.89120 2.95622 3.56979 3.57857 4.06984 4.50343 4.52357 4.91588 4.94348 5.10733 5.18486 5.43321 5.63817 5.67568 5.71716 5.82065 5.88136 5.97757 6.03937 6.24312 6.46091 6.47110 6.55991 6.70796 6.79630 6.85428 6.98732 7.15992 7.33301 7.56073 7.74465 8.06419 8.32413 8.39352 9.61805 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.004880 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.769362 B = 5736.400785 C = 6231.798339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.133 3.867 4 N -1.038 6.038 5 S 2.712 3.288 6 O -0.985 6.985 7 O -0.967 6.967 8 C -0.789 4.789 9 C 0.010 3.990 10 C -0.237 4.237 11 C 0.142 3.858 12 C -0.423 4.423 13 H 0.094 0.906 14 C 0.070 3.930 15 N -0.758 5.758 16 Si 0.920 3.080 17 H -0.255 1.255 18 H -0.266 1.266 19 H -0.269 1.269 20 C -0.169 4.169 21 C 0.077 3.923 22 Cl -0.100 7.100 23 C 0.126 3.874 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.292 0.708 33 H 0.134 0.866 34 H 0.076 0.924 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 1.026 0.184 8.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C 0.007 3.993 4 N -0.876 5.876 5 S 2.811 3.189 6 O -0.976 6.976 7 O -0.957 6.957 8 C -0.884 4.884 9 C -0.010 4.010 10 C -0.257 4.257 11 C 0.138 3.862 12 C -0.450 4.450 13 H 0.112 0.888 14 C -0.154 4.154 15 N -0.380 5.380 16 Si 0.742 3.258 17 H -0.178 1.178 18 H -0.191 1.191 19 H -0.194 1.194 20 C -0.190 4.190 21 C 0.049 3.951 22 Cl -0.072 7.072 23 C 0.000 4.000 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.149 1.411 1.012 8.332 hybrid contribution 0.699 -1.130 -0.787 1.544 sum -7.450 0.281 0.225 7.459 Atomic orbital electron populations 1.21736 0.94550 1.01949 1.01916 1.23256 0.95300 0.97678 0.98294 1.22748 0.88862 0.95780 0.91890 1.60290 1.28130 1.45519 1.53617 1.00748 0.71435 0.72920 0.73760 1.93457 1.85618 1.33016 1.85468 1.93525 1.85065 1.81535 1.35606 1.29155 1.27083 1.03433 1.28759 1.20192 0.92105 0.97858 0.90869 1.21105 1.05240 0.94339 1.05055 1.17720 0.88791 0.91354 0.88384 1.20015 1.06402 0.95173 1.23392 0.88842 1.26205 0.96536 0.98849 0.93760 1.69802 1.19862 1.17098 1.31203 0.86047 0.81039 0.79583 0.79097 1.17813 1.19055 1.19360 1.21268 0.99908 1.00191 0.97605 1.20030 0.93418 0.90230 0.91462 1.98293 1.65887 1.80042 1.62960 1.22884 0.88640 0.92236 0.96192 0.92486 0.92327 0.92245 0.87926 0.90317 0.90283 0.86563 0.87514 0.89669 0.84847 0.90597 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.71 37.16 0.36 -0.93 16 2 C -0.12 -1.51 4.54 -89.70 -0.41 -1.92 16 3 C 0.13 1.78 8.55 -2.78 -0.02 1.76 16 4 N -1.04 -17.68 4.01 -118.46 -0.47 -18.15 16 5 S 2.71 56.75 5.55 -107.50 -0.60 56.15 16 6 O -0.98 -21.92 16.92 -57.17 -0.97 -22.89 16 7 O -0.97 -22.09 16.44 -57.17 -0.94 -23.03 16 8 C -0.79 -17.95 5.93 -39.25 -0.23 -18.18 16 9 C 0.01 0.22 9.52 -39.66 -0.38 -0.15 16 10 C -0.24 -5.45 9.79 -38.87 -0.38 -5.83 16 11 C 0.14 3.48 5.57 -106.83 -0.60 2.89 16 12 C -0.42 -9.93 9.05 -37.74 -0.34 -10.27 16 13 H 0.09 2.06 7.91 -52.49 -0.42 1.64 16 14 C 0.07 1.54 5.14 -17.34 -0.09 1.45 16 15 N -0.76 -17.27 10.95 55.55 0.61 -16.66 16 16 Si 0.92 16.30 29.60 -169.99 -5.03 11.27 16 17 H -0.25 -4.48 7.11 56.52 0.40 -4.08 16 18 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 19 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 20 C -0.17 -4.15 8.47 -38.83 -0.33 -4.48 16 21 C 0.08 1.79 6.29 -39.57 -0.25 1.54 16 22 Cl -0.10 -2.07 23.32 -51.86 -1.21 -3.28 16 23 C 0.13 1.80 8.07 -2.96 -0.02 1.78 16 24 H 0.06 0.47 7.98 -51.93 -0.41 0.05 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.89 7.99 -51.93 -0.41 0.48 16 30 H 0.12 2.39 7.31 -52.49 -0.38 2.01 16 31 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 33 H 0.13 3.33 6.16 -52.49 -0.32 3.00 16 34 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.08 1.30 5.20 -51.93 -0.27 1.03 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -28.63 318.31 -10.39 -39.02 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.89 Total: 5.12 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: -2.69 Total: -32.36 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.13 Total: -34.81 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.91 Total: -45.91 kcal Atomic # 14 Polarization: 16.30 SS G_CDS: -5.03 Total: 11.27 kcal Atomic # 16 Polarization: 56.75 SS G_CDS: -0.60 Total: 56.15 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -1.21 Total: -3.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.63 -10.39 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336256436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.673 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds