Wall clock time and date at job start Fri Apr 10 2020 23:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53939 * 113.74522 * 2 1 4 4 N 1.47926 * 86.00014 * 138.00601 * 3 2 1 5 5 S 1.65599 * 134.50659 * 155.33847 * 4 3 2 6 6 O 1.42104 * 106.40037 * 23.56645 * 5 4 3 7 7 O 1.42094 * 106.40439 * 156.49033 * 5 4 3 8 8 C 1.76198 * 107.21751 * 270.02797 * 5 4 3 9 9 C 1.38643 * 119.75746 * 114.72521 * 8 5 4 10 10 C 1.37605 * 120.26297 * 179.72528 * 9 8 5 11 11 C 1.40741 * 119.77105 * 0.52134 * 10 9 8 12 12 C 1.41388 * 120.23801 * 179.77189 * 11 10 9 13 13 H 1.07999 * 120.00100 * 24.37777 * 12 11 10 14 14 C 1.39950 * 120.00211 * 204.37451 * 12 11 10 15 15 N 1.30824 * 119.99678 * 17.87593 * 14 12 11 16 16 Si 1.86801 * 120.00162 * 197.87156 * 14 12 11 17 17 H 1.48504 * 109.47122 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47103 * 120.00154 * 16 14 12 19 19 H 1.48496 * 109.46994 * 240.00110 * 16 14 12 20 20 C 1.40682 * 119.52420 * 359.75310 * 11 10 9 21 21 C 1.37759 * 119.73220 * 359.97438 * 20 11 10 22 22 Cl 1.73603 * 119.88632 * 179.97438 * 21 20 11 23 23 C 1.47589 * 91.00366 * 335.36079 * 4 3 2 24 24 H 1.09007 * 109.46530 * 321.26281 * 1 2 3 25 25 H 1.08996 * 109.47020 * 81.25504 * 1 2 3 26 26 H 1.08998 * 109.47104 * 201.26322 * 1 2 3 27 27 H 1.09008 * 112.94002 * 228.40528 * 2 1 3 28 28 H 1.09003 * 113.77309 * 252.35950 * 3 2 1 29 29 H 1.09001 * 113.77171 * 23.75883 * 3 2 1 30 30 H 1.07996 * 119.86285 * 359.97438 * 9 8 5 31 31 H 1.07993 * 120.11087 * 180.27658 * 10 9 8 32 32 H 0.96999 * 119.99557 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.13346 * 180.02562 * 20 11 10 34 34 H 1.09003 * 113.76079 * 270.33808 * 23 4 3 35 35 H 1.08995 * 113.87311 * 138.95701 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1499 1.4091 0.0000 4 7 3.1122 0.8730 0.9873 5 16 4.6513 1.2772 1.4459 6 8 4.8246 2.6462 1.1065 7 8 4.8219 0.7757 2.7644 8 6 5.7572 0.3665 0.4203 9 6 6.5823 1.0382 -0.4687 10 6 7.4540 0.3377 -1.2705 11 6 7.4987 -1.0669 -1.1941 12 6 8.3872 -1.7968 -2.0169 13 1 9.2793 -1.3243 -2.4007 14 6 8.1107 -3.1316 -2.3339 15 7 6.9001 -3.6031 -2.1801 16 14 9.4701 -4.2399 -2.9766 17 1 10.7379 -3.4710 -3.0595 18 1 9.6478 -5.3907 -2.0551 19 1 9.1052 -4.7387 -4.3268 20 6 6.6533 -1.7394 -0.2929 21 6 5.7924 -1.0179 0.5045 22 17 4.7469 -1.8437 1.6175 23 6 2.1498 -0.1674 1.3992 24 1 -0.3632 0.8017 0.6431 25 1 -0.3633 0.1562 -1.0157 26 1 -0.3633 -0.9577 0.3727 27 1 1.9549 -0.6664 -0.7508 28 1 2.6035 1.6896 -0.9506 29 1 1.4911 2.1789 0.4019 30 1 6.5435 2.1158 -0.5291 31 1 8.0987 0.8638 -1.9589 32 1 6.7084 -4.5282 -2.4001 33 1 6.6798 -2.8170 -0.2259 34 1 1.4910 0.1405 2.2112 35 1 2.6017 -1.1452 1.5656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336256436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:21 Heat of formation + Delta-G solvation = -54.610398 kcal Electronic energy + Delta-G solvation = -22220.346476 eV Core-core repulsion = 18757.023983 eV Total energy + Delta-G solvation = -3463.322494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.11846 -39.63027 -38.17815 -37.38221 -36.79517 -35.83984 -32.10330 -31.89471 -31.25899 -27.79309 -27.10190 -26.36733 -23.53263 -23.10269 -21.00848 -19.78476 -19.61543 -18.70875 -18.25794 -17.39699 -16.99019 -16.42794 -16.13636 -15.76466 -15.11442 -15.10735 -14.61945 -14.51635 -14.22899 -14.11659 -13.68947 -13.53541 -13.39536 -13.18297 -13.12724 -13.06181 -12.99543 -12.73028 -12.28335 -12.25604 -12.13860 -12.00535 -11.84871 -11.51138 -11.38561 -11.23479 -11.11224 -9.99129 -9.87789 -9.51490 -8.95830 -6.75043 -0.43094 0.28452 0.82280 1.18377 1.35442 1.40738 1.53532 2.08207 2.10522 2.40380 2.87647 3.29125 3.38424 3.61226 3.82101 4.14904 4.16090 4.54056 4.57740 4.64667 4.66457 4.71667 4.78195 4.88688 4.97971 5.02954 5.08002 5.18148 5.21439 5.31487 5.37245 5.52168 5.54172 5.71118 5.77284 5.96889 6.28752 6.55055 6.60595 7.98516 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.004880 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.769362 B = 5736.400785 C = 6231.798339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.126 3.874 4 N -1.046 6.046 5 S 2.729 3.271 6 O -1.001 7.001 7 O -0.991 6.991 8 C -0.806 4.806 9 C 0.003 3.997 10 C -0.250 4.250 11 C 0.114 3.886 12 C -0.446 4.446 13 H 0.101 0.899 14 C 0.034 3.966 15 N -0.785 5.785 16 Si 0.993 3.007 17 H -0.252 1.252 18 H -0.263 1.263 19 H -0.259 1.259 20 C -0.192 4.192 21 C 0.069 3.931 22 Cl -0.082 7.082 23 C 0.117 3.883 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.302 0.698 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 0.798 -0.355 9.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C 0.002 3.998 4 N -0.887 5.887 5 S 2.827 3.173 6 O -0.992 6.992 7 O -0.982 6.982 8 C -0.899 4.899 9 C -0.017 4.017 10 C -0.270 4.270 11 C 0.110 3.890 12 C -0.472 4.472 13 H 0.119 0.881 14 C -0.187 4.187 15 N -0.407 5.407 16 Si 0.812 3.188 17 H -0.175 1.175 18 H -0.187 1.187 19 H -0.184 1.184 20 C -0.212 4.212 21 C 0.041 3.959 22 Cl -0.053 7.053 23 C -0.007 4.007 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.234 1.188 0.466 9.322 hybrid contribution 0.900 -1.055 -0.594 1.509 sum -8.334 0.132 -0.128 8.336 Atomic orbital electron populations 1.21704 0.91552 1.03026 1.03139 1.23126 0.97470 0.96312 0.96266 1.23153 0.88112 0.97328 0.91207 1.60105 1.27243 1.46719 1.54649 1.00057 0.72077 0.72210 0.72913 1.93423 1.86395 1.33808 1.85570 1.93482 1.85977 1.81793 1.36929 1.29546 1.28061 1.03492 1.28775 1.20441 0.91839 0.98680 0.90716 1.21339 1.05780 0.94133 1.05730 1.18075 0.89518 0.92293 0.89100 1.20339 1.06632 0.96451 1.23728 0.88095 1.27072 0.98624 0.99538 0.93464 1.69826 1.21589 1.18035 1.31270 0.84970 0.77838 0.77336 0.78673 1.17475 1.18713 1.18374 1.21255 1.01307 0.99801 0.98883 1.20183 0.93396 0.90759 0.91562 1.98286 1.65072 1.79778 1.62150 1.23206 0.88151 0.90902 0.98488 0.91066 0.91153 0.91437 0.89258 0.90411 0.87439 0.85043 0.85940 0.88631 0.85934 0.88015 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.71 71.98 0.70 -1.29 16 2 C -0.11 -2.45 4.54 -10.14 -0.05 -2.49 16 3 C 0.13 3.12 8.55 86.42 0.74 3.85 16 4 N -1.05 -34.41 4.01 -528.69 -2.12 -36.53 16 5 S 2.73 113.68 5.55 -56.49 -0.31 113.37 16 6 O -1.00 -44.14 16.92 -128.00 -2.17 -46.31 16 7 O -0.99 -45.28 16.44 -128.00 -2.10 -47.38 16 8 C -0.81 -37.15 5.93 22.48 0.13 -37.01 16 9 C 0.00 0.15 9.52 22.22 0.21 0.36 16 10 C -0.25 -11.69 9.79 22.73 0.22 -11.47 16 11 C 0.11 5.76 5.57 -21.30 -0.12 5.64 16 12 C -0.45 -21.18 9.05 23.46 0.21 -20.96 16 13 H 0.10 4.47 7.91 -2.91 -0.02 4.45 16 14 C 0.03 1.49 5.14 85.26 0.44 1.93 16 15 N -0.79 -36.07 10.95 21.83 0.24 -35.83 16 16 Si 0.99 32.73 29.60 68.60 2.03 34.76 16 17 H -0.25 -8.10 7.11 99.48 0.71 -7.39 16 18 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 19 H -0.26 -8.13 7.11 99.48 0.71 -7.42 16 20 C -0.19 -9.70 8.47 22.75 0.19 -9.51 16 21 C 0.07 3.30 6.29 22.27 0.14 3.44 16 22 Cl -0.08 -3.39 23.32 -2.72 -0.06 -3.46 16 23 C 0.12 3.15 8.07 86.48 0.70 3.85 16 24 H 0.07 0.87 7.98 -2.38 -0.02 0.85 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.11 2.06 7.99 -2.39 -0.02 2.04 16 30 H 0.13 5.43 7.31 -2.91 -0.02 5.41 16 31 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 32 H 0.30 12.25 8.30 -92.71 -0.77 11.48 16 33 H 0.12 6.33 6.16 -2.91 -0.02 6.32 16 34 H 0.10 2.21 8.10 -2.39 -0.02 2.19 16 35 H 0.07 2.08 5.20 -2.39 -0.01 2.07 16 Total: -1.00 -61.96 318.31 0.15 -61.81 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 1.12 Total: 23.24 kcal Atomic # 6 Polarization: -67.20 SS G_CDS: 3.52 Total: -63.68 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -1.88 Total: -72.36 kcal Atomic # 8 Polarization: -89.42 SS G_CDS: -4.27 Total: -93.69 kcal Atomic # 14 Polarization: 32.73 SS G_CDS: 2.03 Total: 34.76 kcal Atomic # 16 Polarization: 113.68 SS G_CDS: -0.31 Total: 113.37 kcal Atomic # 17 Polarization: -3.39 SS G_CDS: -0.06 Total: -3.46 kcal Total: -61.96 0.15 -61.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336256436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.203 kcal (2) G-P(sol) polarization free energy of solvation -61.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds