Wall clock time and date at job start Fri Apr 10 2020 23:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86791 * 120.00493 * 2 1 4 4 H 1.48507 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46993 * 299.99756 * 3 2 1 6 6 H 1.48499 * 109.47512 * 59.99685 * 3 2 1 7 7 C 1.39961 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00137 * 175.16067 * 7 2 1 9 9 C 1.41070 * 119.99479 * 355.16419 * 7 2 1 10 10 C 1.40739 * 120.29596 * 34.96518 * 9 7 2 11 11 C 1.37541 * 119.81051 * 179.97438 * 10 9 7 12 12 Cl 1.73599 * 119.78935 * 179.97438 * 11 10 9 13 13 C 1.39009 * 120.42093 * 359.97438 * 11 10 9 14 14 C 1.38191 * 120.60319 * 359.72408 * 13 11 10 15 15 C 1.38610 * 120.16815 * 0.56194 * 14 13 11 16 16 N 1.39152 * 120.20987 * 179.71996 * 15 14 13 17 17 C 1.34782 * 119.99554 * 335.12946 * 16 15 14 18 18 O 1.21278 * 120.00378 * 354.31331 * 17 16 15 19 19 C 1.50699 * 119.99550 * 174.59930 * 17 16 15 20 20 C 1.53784 * 113.61187 * 279.13070 * 19 17 16 21 21 C 1.53958 * 87.01750 * 220.05104 * 20 19 17 22 22 F 1.39899 * 113.53667 * 270.80788 * 21 20 19 23 23 F 1.39907 * 113.66596 * 139.93326 * 21 20 19 24 24 C 1.53777 * 87.11390 * 25.36128 * 21 20 19 25 25 H 0.97006 * 119.99655 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.09313 * 359.95393 * 10 9 7 27 27 H 1.07997 * 119.69513 * 180.02562 * 13 11 10 28 28 H 1.07999 * 119.91393 * 180.27432 * 14 13 11 29 29 H 0.97000 * 120.00171 * 155.12386 * 16 15 14 30 30 H 1.08997 * 112.85290 * 50.32355 * 19 17 16 31 31 H 1.09004 * 113.61119 * 334.56586 * 20 19 17 32 32 H 1.08993 * 113.61479 * 105.47278 * 20 19 17 33 33 H 1.08996 * 113.61978 * 220.09018 * 24 21 20 34 34 H 1.09003 * 113.68859 * 89.19735 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 3.7027 1.3461 -0.0006 5 1 1.8840 2.3963 -1.2126 6 1 1.8840 2.3964 1.2124 7 6 2.0083 -1.2121 0.0005 8 1 3.0853 -1.2139 -0.0784 9 6 1.3065 -2.4315 0.1041 10 6 0.0416 -2.5759 -0.4960 11 6 -0.6336 -3.7694 -0.3892 12 17 -2.1940 -3.9467 -1.1290 13 6 -0.0744 -4.8346 0.3073 14 6 1.1691 -4.7138 0.8979 15 6 1.8686 -3.5203 0.8108 16 7 3.1183 -3.3959 1.4101 17 6 3.4448 -4.1801 2.4565 18 8 2.6158 -4.9207 2.9414 19 6 4.8384 -4.1320 3.0280 20 6 5.8591 -4.9636 2.2334 21 6 6.4486 -5.3888 3.5906 22 9 7.4456 -4.5275 4.0612 23 9 6.8234 -6.7357 3.6430 24 6 5.0609 -5.1117 4.1924 25 1 -0.4850 0.8401 0.0004 26 1 -0.3976 -1.7518 -1.0384 27 1 -0.6147 -5.7666 0.3834 28 1 1.5949 -5.5499 1.4326 29 1 3.7543 -2.7449 1.0747 30 1 5.1736 -3.1170 3.2413 31 1 5.4120 -5.7859 1.6748 32 1 6.5386 -4.3611 1.6307 33 1 5.0968 -4.6285 5.1687 34 1 4.3942 -5.9738 4.1710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336282846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:28 Heat of formation + Delta-G solvation = -104.913386 kcal Electronic energy + Delta-G solvation = -23409.264813 eV Core-core repulsion = 19389.920631 eV Total energy + Delta-G solvation = -4019.344182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.96165 -47.29440 -40.20244 -38.04553 -36.61727 -35.48294 -33.91111 -33.65626 -29.87034 -28.76596 -26.43755 -26.21205 -25.22571 -22.18949 -21.32076 -20.34889 -19.49627 -18.09721 -17.55899 -16.94487 -16.56182 -16.39548 -16.19555 -15.41076 -15.01287 -14.67680 -14.16949 -14.03939 -13.93291 -13.56383 -13.42181 -13.03893 -12.84974 -12.62985 -12.36245 -12.00586 -11.74276 -11.58297 -11.53967 -11.51847 -11.31503 -10.91512 -10.77651 -10.63149 -10.31623 -10.25950 -9.86110 -9.44087 -9.33820 -8.99442 -7.56683 -7.02308 -6.81101 -4.61787 2.23949 2.64649 2.96099 2.99608 3.02750 3.07082 3.23683 3.28849 3.55016 3.66798 3.78906 4.06703 4.20935 4.37470 4.48186 5.11733 5.14182 5.25247 5.28903 5.31698 5.41063 5.56084 5.95104 6.18232 6.29008 6.61756 6.71984 6.90734 7.00013 7.25434 7.39844 7.64329 7.74532 7.80175 8.12605 8.29645 8.54605 8.64506 8.74136 10.07232 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.004252 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.940545 B = 6583.107218 C = 8550.130638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.467 4.467 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.134 4.134 11 C -0.019 4.019 12 Cl -0.123 7.123 13 C -0.205 4.205 14 C -0.094 4.094 15 C 0.033 3.967 16 N -0.631 5.631 17 C 0.512 3.488 18 O -0.531 6.531 19 C -0.131 4.131 20 C -0.149 4.149 21 C 0.253 3.747 22 F -0.180 7.180 23 F -0.189 7.189 24 C -0.140 4.140 25 H 0.282 0.718 26 H 0.144 0.856 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.407 0.593 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.446 -3.921 3.019 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.497 4.497 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.155 4.155 11 C -0.046 4.046 12 Cl -0.094 7.094 13 C -0.226 4.226 14 C -0.114 4.114 15 C -0.061 4.061 16 N -0.272 5.272 17 C 0.298 3.702 18 O -0.409 6.409 19 C -0.153 4.153 20 C -0.187 4.187 21 C 0.217 3.783 22 F -0.161 7.161 23 F -0.170 7.170 24 C -0.178 4.178 25 H 0.093 0.907 26 H 0.162 0.838 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.242 0.758 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.603 -4.305 3.313 10.175 hybrid contribution 0.617 1.198 -0.059 1.349 sum 9.221 -3.108 3.254 10.260 Atomic orbital electron populations 1.69737 1.07307 1.29212 1.36327 1.25845 0.94967 1.01220 0.92326 0.86126 0.80376 0.80731 0.78686 1.18527 1.19777 1.19857 1.19217 0.94472 0.89860 1.46162 0.90451 1.17282 0.91800 0.90596 0.90361 1.21386 0.96504 0.95148 1.02423 1.20856 0.86020 0.96866 1.00866 1.98258 1.30633 1.98017 1.82528 1.20238 0.97555 0.97891 1.06909 1.20688 0.94621 0.96204 0.99899 1.17890 0.88489 0.96149 1.03595 1.42908 1.15978 1.37679 1.30651 1.19925 0.88661 0.81454 0.80142 1.90649 1.50055 1.40449 1.59748 1.22535 0.94160 1.01222 0.97377 1.24058 0.97519 1.01565 0.95543 1.22088 0.85334 0.72689 0.98194 1.93018 1.64149 1.69128 1.89765 1.93016 1.93180 1.33691 1.97131 1.23967 0.92714 1.01629 0.99475 0.90673 0.83815 0.87852 0.85643 0.75755 0.85641 0.86434 0.87935 0.88384 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.34 10.60 55.55 0.59 -18.75 16 2 C 0.07 1.68 5.42 -17.32 -0.09 1.58 16 3 Si 0.92 17.14 29.56 -169.99 -5.03 12.11 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.47 -10.74 8.47 -37.86 -0.32 -11.06 16 8 H 0.08 1.61 6.88 -52.49 -0.36 1.25 16 9 C 0.10 2.47 5.56 -106.66 -0.59 1.88 16 10 C -0.13 -3.26 8.43 -38.89 -0.33 -3.59 16 11 C -0.02 -0.44 6.31 -39.55 -0.25 -0.69 16 12 Cl -0.12 -2.47 28.94 -51.86 -1.50 -3.97 16 13 C -0.21 -4.51 9.82 -39.31 -0.39 -4.89 16 14 C -0.09 -2.06 8.70 -39.46 -0.34 -2.40 16 15 C 0.03 0.72 6.46 -83.18 -0.54 0.18 16 16 N -0.63 -11.22 5.15 -9.48 -0.05 -11.27 16 17 C 0.51 8.35 7.15 -10.98 -0.08 8.27 16 18 O -0.53 -10.43 13.07 5.56 0.07 -10.36 16 19 C -0.13 -1.51 4.12 -90.96 -0.38 -1.88 16 20 C -0.15 -1.47 7.43 -25.82 -0.19 -1.66 16 21 C 0.25 2.74 3.28 -25.83 -0.08 2.65 16 22 F -0.18 -2.05 17.38 2.25 0.04 -2.02 16 23 F -0.19 -2.30 17.41 2.25 0.04 -2.26 16 24 C -0.14 -1.52 7.18 -25.92 -0.19 -1.71 16 25 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 26 H 0.14 3.68 6.14 -52.49 -0.32 3.36 16 27 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 28 H 0.13 2.68 5.78 -52.49 -0.30 2.38 16 29 H 0.41 6.30 7.35 -40.82 -0.30 6.00 16 30 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.12 1.18 8.09 -51.93 -0.42 0.76 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.13 1.49 7.45 -51.93 -0.39 1.11 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -26.92 314.26 -7.79 -34.71 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -2.92 Total: 10.38 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -3.77 Total: -13.31 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.54 Total: -30.02 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.08 Total: -4.28 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -1.50 Total: -3.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.92 -7.79 -34.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336282846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.205 kcal (2) G-P(sol) polarization free energy of solvation -26.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds