Wall clock time and date at job start Fri Apr 10 2020 23:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86791 * 120.00493 * 2 1 4 4 H 1.48507 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46993 * 299.99756 * 3 2 1 6 6 H 1.48499 * 109.47512 * 59.99685 * 3 2 1 7 7 C 1.39961 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00137 * 175.16067 * 7 2 1 9 9 C 1.41070 * 119.99479 * 355.16419 * 7 2 1 10 10 C 1.40739 * 120.29596 * 34.96518 * 9 7 2 11 11 C 1.37541 * 119.81051 * 179.97438 * 10 9 7 12 12 Cl 1.73599 * 119.78935 * 179.97438 * 11 10 9 13 13 C 1.39009 * 120.42093 * 359.97438 * 11 10 9 14 14 C 1.38191 * 120.60319 * 359.72408 * 13 11 10 15 15 C 1.38610 * 120.16815 * 0.56194 * 14 13 11 16 16 N 1.39152 * 120.20987 * 179.71996 * 15 14 13 17 17 C 1.34782 * 119.99554 * 335.12946 * 16 15 14 18 18 O 1.21278 * 120.00378 * 354.31331 * 17 16 15 19 19 C 1.50699 * 119.99550 * 174.59930 * 17 16 15 20 20 C 1.53784 * 113.61187 * 279.13070 * 19 17 16 21 21 C 1.53958 * 87.01750 * 220.05104 * 20 19 17 22 22 F 1.39899 * 113.53667 * 270.80788 * 21 20 19 23 23 F 1.39907 * 113.66596 * 139.93326 * 21 20 19 24 24 C 1.53777 * 87.11390 * 25.36128 * 21 20 19 25 25 H 0.97006 * 119.99655 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.09313 * 359.95393 * 10 9 7 27 27 H 1.07997 * 119.69513 * 180.02562 * 13 11 10 28 28 H 1.07999 * 119.91393 * 180.27432 * 14 13 11 29 29 H 0.97000 * 120.00171 * 155.12386 * 16 15 14 30 30 H 1.08997 * 112.85290 * 50.32355 * 19 17 16 31 31 H 1.09004 * 113.61119 * 334.56586 * 20 19 17 32 32 H 1.08993 * 113.61479 * 105.47278 * 20 19 17 33 33 H 1.08996 * 113.61978 * 220.09018 * 24 21 20 34 34 H 1.09003 * 113.68859 * 89.19735 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 3.7027 1.3461 -0.0006 5 1 1.8840 2.3963 -1.2126 6 1 1.8840 2.3964 1.2124 7 6 2.0083 -1.2121 0.0005 8 1 3.0853 -1.2139 -0.0784 9 6 1.3065 -2.4315 0.1041 10 6 0.0416 -2.5759 -0.4960 11 6 -0.6336 -3.7694 -0.3892 12 17 -2.1940 -3.9467 -1.1290 13 6 -0.0744 -4.8346 0.3073 14 6 1.1691 -4.7138 0.8979 15 6 1.8686 -3.5203 0.8108 16 7 3.1183 -3.3959 1.4101 17 6 3.4448 -4.1801 2.4565 18 8 2.6158 -4.9207 2.9414 19 6 4.8384 -4.1320 3.0280 20 6 5.8591 -4.9636 2.2334 21 6 6.4486 -5.3888 3.5906 22 9 7.4456 -4.5275 4.0612 23 9 6.8234 -6.7357 3.6430 24 6 5.0609 -5.1117 4.1924 25 1 -0.4850 0.8401 0.0004 26 1 -0.3976 -1.7518 -1.0384 27 1 -0.6147 -5.7666 0.3834 28 1 1.5949 -5.5499 1.4326 29 1 3.7543 -2.7449 1.0747 30 1 5.1736 -3.1170 3.2413 31 1 5.4120 -5.7859 1.6748 32 1 6.5386 -4.3611 1.6307 33 1 5.0968 -4.6285 5.1687 34 1 4.3942 -5.9738 4.1710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336282846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:26 Heat of formation + Delta-G solvation = -117.943218 kcal Electronic energy + Delta-G solvation = -23409.829829 eV Core-core repulsion = 19389.920631 eV Total energy + Delta-G solvation = -4019.909197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.83954 -48.18199 -41.54679 -39.51394 -37.85220 -37.12696 -35.52076 -35.29056 -31.61378 -30.37325 -27.62252 -27.25416 -26.69099 -23.69263 -22.84185 -21.69110 -20.68752 -19.36452 -19.12519 -18.11902 -17.79923 -17.48581 -17.19142 -16.92213 -16.34286 -16.26761 -15.33315 -15.22360 -15.05153 -14.90958 -14.62846 -14.46654 -14.31798 -14.04476 -13.61715 -13.37693 -13.15346 -13.03905 -12.85660 -12.61802 -12.48619 -12.41356 -12.34522 -11.98874 -11.85393 -11.50049 -11.45089 -11.07059 -10.92469 -10.52044 -9.34549 -8.70541 -8.50555 -6.38033 0.60269 0.93939 1.45192 1.50620 1.55770 1.58707 1.69120 2.23092 2.23300 2.48099 2.75665 2.76892 3.18568 3.28597 3.45643 3.53482 4.00178 4.28801 4.40331 4.48586 4.49197 4.56062 4.66013 4.74418 4.94308 5.00497 5.10989 5.24081 5.31416 5.53684 5.69854 5.88811 6.04108 6.10474 6.46069 6.71725 6.86623 6.93358 7.32950 8.39665 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.004252 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.940545 B = 6583.107218 C = 8550.130638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.244 1.244 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.481 4.481 8 H 0.096 0.904 9 C 0.077 3.923 10 C -0.157 4.157 11 C -0.030 4.030 12 Cl -0.105 7.105 13 C -0.209 4.209 14 C -0.104 4.104 15 C 0.037 3.963 16 N -0.630 5.630 17 C 0.514 3.486 18 O -0.566 6.566 19 C -0.123 4.123 20 C -0.139 4.139 21 C 0.256 3.744 22 F -0.181 7.181 23 F -0.198 7.198 24 C -0.141 4.141 25 H 0.284 0.716 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.418 0.582 30 H 0.153 0.847 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.536 -3.424 3.488 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.166 1.166 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.512 4.512 8 H 0.114 0.886 9 C 0.073 3.927 10 C -0.178 4.178 11 C -0.057 4.057 12 Cl -0.077 7.077 13 C -0.229 4.229 14 C -0.125 4.125 15 C -0.058 4.058 16 N -0.273 5.273 17 C 0.302 3.698 18 O -0.445 6.445 19 C -0.144 4.144 20 C -0.178 4.178 21 C 0.220 3.780 22 F -0.162 7.162 23 F -0.179 7.179 24 C -0.179 4.179 25 H 0.095 0.905 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.256 0.744 30 H 0.170 0.830 31 H 0.134 0.866 32 H 0.146 0.854 33 H 0.130 0.870 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.726 -3.821 3.781 11.998 hybrid contribution -0.078 0.946 -0.172 0.965 sum 10.648 -2.875 3.610 11.605 Atomic orbital electron populations 1.69848 1.08973 1.30120 1.37493 1.26750 0.95575 1.04495 0.91498 0.85072 0.79903 0.76147 0.78135 1.16644 1.19911 1.20212 1.19571 0.95437 0.89897 1.46257 0.88594 1.17615 0.92166 0.91757 0.91163 1.21333 0.97567 0.95291 1.03630 1.20946 0.86899 0.96674 1.01210 1.98249 1.29267 1.97943 1.82207 1.20479 0.97787 0.98271 1.06347 1.20861 0.94911 0.96561 1.00164 1.17991 0.89790 0.95348 1.02664 1.42942 1.14787 1.38485 1.31040 1.20734 0.90186 0.79831 0.79014 1.90631 1.51742 1.41592 1.60571 1.22568 0.91057 1.03086 0.97710 1.24065 0.96999 1.01408 0.95281 1.22048 0.85019 0.72248 0.98698 1.93020 1.64213 1.69066 1.89858 1.93002 1.93238 1.34446 1.97196 1.23979 0.92585 1.01183 1.00148 0.90485 0.85704 0.86239 0.85134 0.74395 0.82985 0.86643 0.85416 0.86960 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.25 10.60 21.83 0.23 -41.02 16 2 C 0.03 1.37 5.42 85.26 0.46 1.83 16 3 Si 0.99 34.31 29.56 68.60 2.03 36.34 16 4 H -0.24 -7.70 7.11 99.48 0.71 -6.99 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 6 H -0.28 -9.70 7.11 99.48 0.71 -9.00 16 7 C -0.48 -21.95 8.47 23.38 0.20 -21.75 16 8 H 0.10 3.85 6.88 -2.91 -0.02 3.83 16 9 C 0.08 3.71 5.56 -21.18 -0.12 3.59 16 10 C -0.16 -7.84 8.43 22.72 0.19 -7.65 16 11 C -0.03 -1.40 6.31 22.29 0.14 -1.26 16 12 Cl -0.11 -4.25 28.94 -2.72 -0.08 -4.33 16 13 C -0.21 -9.15 9.82 22.44 0.22 -8.93 16 14 C -0.10 -4.57 8.70 22.35 0.19 -4.38 16 15 C 0.04 1.62 6.46 38.86 0.25 1.87 16 16 N -0.63 -21.52 5.15 -302.29 -1.56 -23.08 16 17 C 0.51 15.93 7.15 87.66 0.63 16.55 16 18 O -0.57 -21.80 13.07 -3.02 -0.04 -21.84 16 19 C -0.12 -2.48 4.12 -11.01 -0.05 -2.52 16 20 C -0.14 -2.34 7.43 31.18 0.23 -2.10 16 21 C 0.26 4.87 3.28 31.18 0.10 4.98 16 22 F -0.18 -3.59 17.38 44.97 0.78 -2.81 16 23 F -0.20 -4.44 17.41 44.97 0.78 -3.66 16 24 C -0.14 -2.76 7.18 31.12 0.22 -2.54 16 25 H 0.28 12.94 8.30 -92.70 -0.77 12.17 16 26 H 0.13 6.65 6.14 -2.91 -0.02 6.63 16 27 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 28 H 0.13 5.55 5.78 -2.91 -0.02 5.53 16 29 H 0.42 12.07 7.35 -92.71 -0.68 11.39 16 30 H 0.15 2.32 8.14 -2.39 -0.02 2.31 16 31 H 0.12 2.04 8.09 -2.38 -0.02 2.02 16 32 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.11 2.58 7.45 -2.39 -0.02 2.56 16 Total: -1.00 -58.31 314.26 5.32 -52.98 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.50 Total: 29.73 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 2.68 Total: -22.32 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -1.33 Total: -64.10 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.04 Total: -21.84 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 1.56 Total: -6.47 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.34 kcal Atomic # 17 Polarization: -4.25 SS G_CDS: -0.08 Total: -4.33 kcal Total: -58.31 5.32 -52.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336282846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.959 kcal (2) G-P(sol) polarization free energy of solvation -58.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds